Understanding the mechanical response of double-stranded DNA and RNA under constant stretching forces using all-atom molecular dynamics
Marin-Gonzalez, Alberto, Vilhena, J. G., Perez, Ruben, Moreno-Herrero, Fernando
Published in Proceedings of the National Academy of Sciences - PNAS (03.07.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (03.07.2017)
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Journal Article
A molecular view of DNA flexibility
Marin-Gonzalez, Alberto, Vilhena, J. G., Perez, Ruben, Moreno-Herrero, Fernando
Published in Quarterly reviews of biophysics (2021)
Published in Quarterly reviews of biophysics (2021)
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Journal Article
Purified Smc5/6 Complex Exhibits DNA Substrate Recognition and Compaction
Gutierrez-Escribano, Pilar, Hormeño, Silvia, Madariaga-Marcos, Julene, Solé-Soler, Roger, O’Reilly, Francis J., Morris, Kyle, Aicart-Ramos, Clara, Aramayo, Ricardo, Montoya, Alex, Kramer, Holger, Rappsilber, Juri, Torres-Rosell, Jordi, Moreno-Herrero, Fernando, Aragon, Luis
Published in Molecular cell (17.12.2020)
Published in Molecular cell (17.12.2020)
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Journal Article
Long Noncoding RNA NIHCOLE Promotes Ligation Efficiency of DNA Double-Strand Breaks in Hepatocellular Carcinoma
Unfried, Juan P, Marín-Baquero, Mikel, Rivera-Calzada, Ángel, Razquin, Nerea, Martín-Cuevas, Eva M, de Bragança, Sara, Aicart-Ramos, Clara, McCoy, Christopher, Prats-Mari, Laura, Arribas-Bosacoma, Raquel, Lee, Linda, Caruso, Stefano, Zucman-Rossi, Jessica, Sangro, Bruno, Williams, Gareth, Moreno-Herrero, Fernando, Llorca, Oscar, Lees-Miller, Susan P, Fortes, Puri
Published in Cancer research (Chicago, Ill.) (01.10.2021)
Published in Cancer research (Chicago, Ill.) (01.10.2021)
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Journal Article
Mechanical Identities of RNA and DNA Double Helices Unveiled at the Single-Molecule Level
Herrero-Galán, Elías, Fuentes-Perez, Maria Eugenia, Carrasco, Carolina, Valpuesta, José M, Carrascosa, José L, Moreno-Herrero, Fernando, Arias-Gonzalez, J. Ricardo
Published in Journal of the American Chemical Society (09.01.2013)
Published in Journal of the American Chemical Society (09.01.2013)
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Journal Article
Bulk and single-molecule analysis of a bacterial DNA2-like helicase–nuclease reveals a single-stranded DNA looping motor
Wilkinson, Oliver J, Carrasco, Carolina, Aicart-Ramos, Clara, Moreno-Herrero, Fernando, Dillingham, Mark S
Published in Nucleic acids research (20.08.2020)
Published in Nucleic acids research (20.08.2020)
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Journal Article
APLF and long non-coding RNA NIHCOLE promote stable DNA synapsis in non-homologous end joining
De Bragança, Sara, Aicart-Ramos, Clara, Arribas-Bosacoma, Raquel, Rivera-Calzada, Angel, Unfried, Juan Pablo, Prats-Mari, Laura, Marin-Baquero, Mikel, Fortes, Puri, Llorca, Oscar, Moreno-Herrero, Fernando
Published in Cell reports (Cambridge) (31.01.2023)
Published in Cell reports (Cambridge) (31.01.2023)
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Journal Article
High flexibility of DNA on short length scales probed by atomic force microscopy
Nelson, Philip C, Wiggins, Paul A, van der Heijden, Thijn, Moreno-Herrero, Fernando, Spakowitz, Andrew, Phillips, Rob, Widom, Jonathan, Dekker, Cees
Published in Nature nanotechnology (01.11.2006)
Published in Nature nanotechnology (01.11.2006)
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Journal Article
AFM volumetric methods for the characterization of proteins and nucleic acids
Fuentes-Perez, Maria Eugenia, Dillingham, Mark S., Moreno-Herrero, Fernando
Published in Methods (San Diego, Calif.) (01.04.2013)
Published in Methods (San Diego, Calif.) (01.04.2013)
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Journal Article
High resolution atomic force microscopy of double-stranded RNA
Ares, Pablo, Fuentes-Perez, Maria Eugenia, Herrero-Galán, Elías, Valpuesta, José M, Gil, Adriana, Gomez-Herrero, Julio, Moreno-Herrero, Fernando
Published in Nanoscale (01.01.2016)
Published in Nanoscale (01.01.2016)
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Journal Article
The structural basis for dynamic DNA binding and bridging interactions which condense the bacterial centromere
Fisher, Gemma Lm, Pastrana, César L, Higman, Victoria A, Koh, Alan, Taylor, James A, Butterer, Annika, Craggs, Timothy, Sobott, Frank, Murray, Heath, Crump, Matthew P, Moreno-Herrero, Fernando, Dillingham, Mark S
Published in eLife (15.12.2017)
Published in eLife (15.12.2017)
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Journal Article
Probing DNA Helicase Kinetics with Temperature-Controlled Magnetic Tweezers
Gollnick, Benjamin, Carrasco, Carolina, Zuttion, Francesca, Gilhooly, Neville S., Dillingham, Mark S., Moreno-Herrero, Fernando
Published in Small (Weinheim an der Bergstrasse, Germany) (18.03.2015)
Published in Small (Weinheim an der Bergstrasse, Germany) (18.03.2015)
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Journal Article
CtIP forms a tetrameric dumbbell-shaped particle which bridges complex DNA end structures for double-strand break repair
Wilkinson, Oliver J, Martín-González, Alejandro, Kang, Haejoo, Northall, Sarah J, Wigley, Dale B, Moreno-Herrero, Fernando, Dillingham, Mark Simon
Published in eLife (02.01.2019)
Published in eLife (02.01.2019)
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Journal Article
Mesoscale conformational changes in the DNA-repair complex Rad50/Mre11/Nbs1 upon binding DNA
Wyman, Claire, Dekker, Cees, Moreno-Herrero, Fernando, Dekker, Nynke H, de Jager, Martijn, Kanaar, Roland
Published in Nature (15.09.2005)
Published in Nature (15.09.2005)
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Journal Article
CTP promotes efficient ParB-dependent DNA condensation by facilitating one-dimensional diffusion from parS
Balaguer, Francisco de Asis, Aicart-Ramos, Clara, Fisher, Gemma LM, de Bragança, Sara, Martin-Cuevas, Eva M, Pastrana, Cesar L, Dillingham, Mark Simon, Moreno-Herrero, Fernando
Published in eLife (12.07.2021)
Published in eLife (12.07.2021)
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Journal Article
Magnetic Tweezers: Probing DNA Helicase Kinetics with Temperature-Controlled Magnetic Tweezers (Small 11/2015)
Gollnick, Benjamin, Carrasco, Carolina, Zuttion, Francesca, Gilhooly, Neville S., Dillingham, Mark S., Moreno-Herrero, Fernando
Published in Small (Weinheim an der Bergstrasse, Germany) (01.03.2015)
Published in Small (Weinheim an der Bergstrasse, Germany) (01.03.2015)
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Journal Article