Evidence for Strong Mutation Bias toward, and Selection against, U Content in SARS-CoV-2: Implications for Vaccine Design
Rice, Alan M, Castillo Morales, Atahualpa, Ho, Alexander T, Mordstein, Christine, Mühlhausen, Stefanie, Watson, Samir, Cano, Laura, Young, Bethan, Kudla, Grzegorz, Hurst, Laurence D
Published in Molecular biology and evolution (01.01.2021)
Published in Molecular biology and evolution (01.01.2021)
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Journal Article
Correcting for differential transcript coverage reveals a strong relationship between alternative splicing and organism complexity
Chen, Lu, Bush, Stephen J, Tovar-Corona, Jaime M, Castillo-Morales, Atahualpa, Urrutia, Araxi O
Published in Molecular biology and evolution (01.06.2014)
Published in Molecular biology and evolution (01.06.2014)
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Journal Article
Sexual size dimorphism in mammals is associated with changes in the size of gene families related to brain development
Padilla-Morales, Benjamin, Acuña-Alonzo, Alin P., Kilili, Huseyin, Castillo-Morales, Atahualpa, Díaz-Barba, Karina, Maher, Kathryn H., Fabian, Laurie, Mourkas, Evangelos, Székely, Tamás, Serrano-Meneses, Martin-Alejandro, Cortez, Diego, Ancona, Sergio, Urrutia, Araxi O.
Published in Nature communications (24.07.2024)
Published in Nature communications (24.07.2024)
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Journal Article
Conditional expression explains molecular evolution of social genes in a microbe
de Oliveira, Janaina Lima, Morales, Atahualpa Castillo, Stewart, Balint, Gruenheit, Nicole, Engelmoer, Jennifer, Brown, Suzanne Battom, de Brito, Reinaldo A., Hurst, Laurence D., Urrutia, Araxi O., Thompson, Christopher R. L., Wolf, Jason B.
Published in Nature communications (23.07.2019)
Published in Nature communications (23.07.2019)
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Journal Article
Transcriptional, Behavioral and Biochemical Profiling in the 3xTg-AD Mouse Model Reveals a Specific Signature of Amyloid Deposition and Functional Decline in Alzheimer's Disease
Yin, Wencheng, Cerda-Hernández, Navei, Castillo-Morales, Atahualpa, Ruiz-Tejada-Segura, Mayra L, Monzón-Sandoval, Jimena, Moreno-Castilla, Perla, Pérez-Ortega, Rodrigo, Bermudez-Rattoni, Federico, Urrutia, Araxi O, Gutiérrez, Humberto
Published in Frontiers in neuroscience (15.12.2020)
Published in Frontiers in neuroscience (15.12.2020)
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Journal Article
Neocortex expansion is linked to size variations in gene families with chemotaxis, cell–cell signalling and immune response functions in mammals
Castillo-Morales, Atahualpa, Monzón-Sandoval, Jimena, de Sousa, Alexandra A., Urrutia, Araxi O., Gutierrez, Humberto
Published in Open biology (01.10.2016)
Published in Open biology (01.10.2016)
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Journal Article
Genes that escape X-inactivation in humans have high intraspecific variability in expression, are associated with mental impairment but are not slow evolving
Zhang, Yuchao, Castillo-Morales, Atahualpa, Jiang, Min, Zhu, Yufei, Hu, Landian, Urrutia, Araxi O, Kong, Xiangyin, Hurst, Laurence D
Published in Molecular biology and evolution (01.12.2013)
Published in Molecular biology and evolution (01.12.2013)
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Journal Article
YAP is essential for tissue tension to ensure vertebrate 3D body shape
Porazinski, Sean, Wang, Huijia, Asaoka, Yoichi, Behrndt, Martin, Miyamoto, Tatsuo, Morita, Hitoshi, Hata, Shoji, Sasaki, Takashi, Krens, S. F. Gabriel, Osada, Yumi, Asaka, Satoshi, Momoi, Akihiro, Linton, Sarah, Miesfeld, Joel B., Link, Brian A., Senga, Takeshi, Castillo-Morales, Atahualpa, Urrutia, Araxi O., Shimizu, Nobuyoshi, Nagase, Hideaki, Matsuura, Shinya, Bagby, Stefan, Kondoh, Hisato, Nishina, Hiroshi, Heisenberg, Carl-Philipp, Furutani-Seiki, Makoto
Published in Nature (London) (14.05.2015)
Published in Nature (London) (14.05.2015)
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Journal Article
Inferring Adaptive Codon Preference to Understand Sources of Selection Shaping Codon Usage Bias
de Oliveira, Janaina Lima, Morales, Atahualpa Castillo, Hurst, Laurence D, Urrutia, Araxi O, Thompson, Christopher R L, Wolf, Jason B
Published in Molecular biology and evolution (01.08.2021)
Published in Molecular biology and evolution (01.08.2021)
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Journal Article
Association of Rare APOE Missense Variants V236E and R251G With Risk of Alzheimer Disease
Le Guen, Yann, Belloy, Michael E, Grenier-Boley, Benjamin, de Rojas, Itziar, Castillo-Morales, Atahualpa, Jansen, Iris, Nicolas, Aude, Bellenguez, Céline, Dalmasso, Carolina, Küçükali, Fahri, Eger, Sarah J, Rasmussen, Katrine Laura, Thomassen, Jesper Qvist, Deleuze, Jean-François, He, Zihuai, Napolioni, Valerio, Amouyel, Philippe, Jessen, Frank, Kehoe, Patrick G, van Duijn, Cornelia, Tsolaki, Magda, Sánchez-Juan, Pascual, Sleegers, Kristel, Ingelsson, Martin, Rossi, Giacomina, Hiltunen, Mikko, Sims, Rebecca, van der Flier, Wiesje M, Ramirez, Alfredo, Andreassen, Ole A, Frikke-Schmidt, Ruth, Williams, Julie, Ruiz, Agustín, Lambert, Jean-Charles, Greicius, Michael D, Arosio, Beatrice, Benussi, Luisa, Boland, Anne, Borroni, Barbara, Caffarra, Paolo, Daian, Delphine, Daniele, Antonio, Debette, Stéphanie, Dufouil, Carole, Düzel, Emrah, Galimberti, Daniela, Giedraitis, Vilmantas, Grimmer, Timo, Graff, Caroline, Grünblatt, Edna, Hanon, Olivier, Hausner, Lucrezia, Heilmann-Heimbach, Stefanie, Holstege, Henne, Hort, Jakub, Jürgen, Deckert, Kuulasmaa, Teemu, van der Lugt, Aad, Masullo, Carlo, Mecocci, Patrizia, Mehrabian, Shima, de Mendonça, Alexandre, Moebus, Susanne, Nacmias, Benedetta, Nicolas, Gael, Olaso, Robert, Papenberg, Goran, Parnetti, Lucilla, Pasquier, Florence, Peters, Oliver, Pijnenburg, Yolande A L, Popp, Julius, Rainero, Innocenzo, Ramakers, Inez, Riedel-Heller, Steffi, Scarmeas, Nikolaos, Scheltens, Philip, Scherbaum, Norbert, Schneider, Anja, Seripa, Davide, Soininen, Hilkka, Solfrizzi, Vincenzo, Spalletta, Gianfranco, Squassina, Alessio, van Swieten, John, Tegos, Thomas J, Tremolizzo, Lucio, Verhey, Frans, Vyhnalek, Martin, Wiltfang, Jens, Boada, Mercè, García-González, Pablo, Puerta, Raquel, Real, Luis M, Álvarez, Victoria, Bullido, María J, Clarimon, Jordi, García-Alberca, José María, Mir, Pablo, Moreno, Fermin
Published in Archives of neurology (Chicago) (01.07.2022)
Published in Archives of neurology (Chicago) (01.07.2022)
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Journal Article
Corrigendum to: Evidence for Strong Mutation Bias toward, and Selection against, U Content in SARS-CoV-2: Implications for Vaccine Design
Rice, Alan M, Morales, Atahualpa Castillo, Ho, Alexander T, Mordstein, Christine, Mühlhausen, Stefanie, Watson, Samir, Cano, Laura, Young, Bethan, Kudla, Grzegorz, Hurst, Laurence D
Published in Molecular biology and evolution (01.11.2021)
Published in Molecular biology and evolution (01.11.2021)
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Journal Article
Causes and Consequences of Purifying Selection on SARS-CoV-2
Morales, Atahualpa Castillo, Rice, Alan M, Ho, Alexander T, Mordstein, Christine, Mühlhausen, Stefanie, Watson, Samir, Cano, Laura, Young, Bethan, Kudla, Grzegorz, Hurst, Laurence D
Published in Genome biology and evolution (01.10.2021)
Published in Genome biology and evolution (01.10.2021)
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Journal Article
Transcription, mRNA Export, and Immune Evasion Shape the Codon Usage of Viruses
Mordstein, Christine, Cano, Laura, Morales, Atahualpa Castillo, Young, Bethan, Ho, Alexander T, Rice, Alan M, Liss, Michael, Hurst, Laurence D, Kudla, Grzegorz
Published in Genome biology and evolution (01.09.2021)
Published in Genome biology and evolution (01.09.2021)
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Journal Article
Alternative Splice in Alternative Lice
Tovar-Corona, Jaime M, Castillo-Morales, Atahualpa, Chen, Lu, Olds, Brett P, Clark, John M, Reynolds, Stuart E, Pittendrigh, Barry R, Feil, Edward J, Urrutia, Araxi O
Published in Molecular biology and evolution (01.10.2015)
Published in Molecular biology and evolution (01.10.2015)
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Journal Article
Presence-absence variation in A. thaliana is primarily associated with genomic signatures consistent with relaxed selective constraints
Bush, Stephen J, Castillo-Morales, Atahualpa, Tovar-Corona, Jaime M, Chen, Lu, Kover, Paula X, Urrutia, Araxi O
Published in Molecular biology and evolution (01.01.2014)
Published in Molecular biology and evolution (01.01.2014)
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Journal Article
Genes that Escape X-Inactivation in Humans Have High Intraspecific Variability in Expression, Are Associated with Mental Impairment but Are Not Slow Evolving
Zhang, Yuchao, Castillo-Morales, Atahualpa, Jiang, Min, Zhu, Yufei, Hu, Landian, Urrutia, Araxi O, Kong, Xiangyin, Hurst, Laurence D
Published in Molecular biology and evolution (01.01.2016)
Published in Molecular biology and evolution (01.01.2016)
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Journal Article
Increased brain size in mammals is associated with size variations in gene families with cell signalling, chemotaxis and immune-related functions
Castillo-Morales, Atahualpa, Monzón-Sandoval, Jimena, Urrutia, Araxi O., Gutiérrez, Humberto
Published in Proceedings of the Royal Society. B, Biological sciences (22.01.2014)
Published in Proceedings of the Royal Society. B, Biological sciences (22.01.2014)
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Journal Article
Increased brain size in mammals is associated with size variations in gene families with cell signalling, chemotaxis and immune-related functions
Castillo-Morales, Atahualpa, Monzón-Sandoval, Jimena, Urrutia, Araxi O., Gutiérrez, Humberto
Published in Proceedings of the Royal Society. B, Biological sciences (22.01.2014)
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Published in Proceedings of the Royal Society. B, Biological sciences (22.01.2014)
Journal Article