JASPAR 2020: update of the open-access database of transcription factor binding profiles
Fornes, Oriol, Castro-Mondragon, Jaime A, Khan, Aziz, van der Lee, Robin, Zhang, Xi, Richmond, Phillip A, Modi, Bhavi P, Correard, Solenne, Gheorghe, Marius, Baranašić, Damir, Santana-Garcia, Walter, Tan, Ge, Chèneby, Jeanne, Ballester, Benoit, Parcy, François, Sandelin, Albin, Lenhard, Boris, Wasserman, Wyeth W, Mathelier, Anthony
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
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Journal Article
JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles
Rauluseviciute, Ieva, Riudavets-Puig, Rafael, Blanc-Mathieu, Romain, Castro-Mondragon, Jaime A, Ferenc, Katalin, Kumar, Vipin, Lemma, Roza Berhanu, Lucas, Jérémy, Chèneby, Jeanne, Baranasic, Damir, Khan, Aziz, Fornes, Oriol, Gundersen, Sveinung, Johansen, Morten, Hovig, Eivind, Lenhard, Boris, Sandelin, Albin, Wasserman, Wyeth W, Parcy, François, Mathelier, Anthony
Published in Nucleic acids research (05.01.2024)
Published in Nucleic acids research (05.01.2024)
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Journal Article
RSAT 2022: regulatory sequence analysis tools
Santana-Garcia, Walter, Castro-Mondragon, Jaime A, Padilla-Gálvez, Mónica, Nguyen, Nga Thi Thuy, Elizondo-Salas, Ana, Ksouri, Najla, Gerbes, François, Thieffry, Denis, Vincens, Pierre, Contreras-Moreira, Bruno, van Helden, Jacques, Thomas-Chollier, Morgane, Medina-Rivera, Alejandra
Published in Nucleic acids research (05.07.2022)
Published in Nucleic acids research (05.07.2022)
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Journal Article
JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles
Castro-Mondragon, Jaime A, Riudavets-Puig, Rafael, Rauluseviciute, Ieva, Berhanu Lemma, Roza, Turchi, Laura, Blanc-Mathieu, Romain, Lucas, Jeremy, Boddie, Paul, Khan, Aziz, Manosalva Pérez, Nicolás, Fornes, Oriol, Leung, Tiffany Y, Aguirre, Alejandro, Hammal, Fayrouz, Schmelter, Daniel, Baranasic, Damir, Ballester, Benoit, Sandelin, Albin, Lenhard, Boris, Vandepoele, Klaas, Wasserman, Wyeth W, Parcy, François, Mathelier, Anthony
Published in Nucleic acids research (07.01.2022)
Published in Nucleic acids research (07.01.2022)
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Journal Article
Tuning promoter boundaries improves regulatory motif discovery in nonmodel plants: the peach example
Ksouri, Najla, Castro-Mondragón, Jaime A, Montardit-Tarda, Francesc, van Helden, Jacques, Contreras-Moreira, Bruno, Gogorcena, Yolanda
Published in Plant physiology (Bethesda) (02.04.2021)
Published in Plant physiology (Bethesda) (02.04.2021)
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Journal Article
RSAT 2018: regulatory sequence analysis tools 20th anniversary
Nguyen, Nga Thi Thuy, Contreras-Moreira, Bruno, Castro-Mondragon, Jaime A, Santana-Garcia, Walter, Ossio, Raul, Robles-Espinoza, Carla Daniela, Bahin, Mathieu, Collombet, Samuel, Vincens, Pierre, Thieffry, Denis, van Helden, Jacques, Medina-Rivera, Alejandra, Thomas-Chollier, Morgane
Published in Nucleic acids research (02.07.2018)
Published in Nucleic acids research (02.07.2018)
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Journal Article
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
Khan, Aziz, Fornes, Oriol, Stigliani, Arnaud, Gheorghe, Marius, Castro-Mondragon, Jaime A, van der Lee, Robin, Bessy, Adrien, Chèneby, Jeanne, Kulkarni, Shubhada R, Tan, Ge, Baranasic, Damir, Arenillas, David J, Sandelin, Albin, Vandepoele, Klaas, Lenhard, Boris, Ballester, Benoît, Wasserman, Wyeth W, Parcy, François, Mathelier, Anthony
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Journal Article
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
Khan, Aziz, Fornes, Oriol, Stigliani, Arnaud, Gheorghe, Marius, Castro-Mondragon, Jaime A, van der Lee, Robin, Bessy, Adrien, Chèneby, Jeanne, Kulkarni, Shubhada R, Tan, Ge, Baranasic, Damir, Arenillas, David J, Sandelin, Albin, Vandepoele, Klaas, Lenhard, Boris, Ballester, Benoît, Wasserman, Wyeth W, Parcy, François, Mathelier, Anthony
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Journal Article
Identification of transcription factor co-binding patterns with non-negative matrix factorization
Rauluseviciute, Ieva, Launay, Timothée, Barzaghi, Guido, Nikumbh, Sarvesh, Lenhard, Boris, Krebs, Arnaud Regis, Castro-Mondragon, Jaime A, Mathelier, Anthony
Published in Nucleic acids research (14.10.2024)
Published in Nucleic acids research (14.10.2024)
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Journal Article
Proteins in the periplasmic space and outer membrane vesicles of Rhizobium etli CE3 grown in minimal medium are largely distinct and change with growth phase
Taboada, Hermenegildo, Meneses, Niurka, Dunn, Michael F, Vargas-Lagunas, Carmen, Buchs, Natasha, Castro-Mondragón, Jaime A, Heller, Manfred, Encarnación, Sergio
Published in Microbiology (Society for General Microbiology) (01.06.2019)
Published in Microbiology (Society for General Microbiology) (01.06.2019)
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Journal Article
Genetic architecture of natural variation of cardiac performance from flies to humans
Saha, Saswati, Spinelli, Lionel, Castro Mondragon, Jaime A, Kervadec, Anaïs, Lynott, Michaela, Kremmer, Laurent, Roder, Laurence, Krifa, Sallouha, Torres, Magali, Brun, Christine, Vogler, Georg, Bodmer, Rolf, Colas, Alexandre R, Ocorr, Karen, Perrin, Laurent
Published in eLife (16.11.2022)
Published in eLife (16.11.2022)
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Journal Article
RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond
Gama-Castro, Socorro, Salgado, Heladia, Santos-Zavaleta, Alberto, Ledezma-Tejeida, Daniela, Muñiz-Rascado, Luis, García-Sotelo, Jair Santiago, Alquicira-Hernández, Kevin, Martínez-Flores, Irma, Pannier, Lucia, Castro-Mondragón, Jaime Abraham, Medina-Rivera, Alejandra, Solano-Lira, Hilda, Bonavides-Martínez, César, Pérez-Rueda, Ernesto, Alquicira-Hernández, Shirley, Porrón-Sotelo, Liliana, López-Fuentes, Alejandra, Hernández-Koutoucheva, Anastasia, Del Moral-Chávez, Víctor, Rinaldi, Fabio, Collado-Vides, Julio
Published in Nucleic acids research (04.01.2016)
Published in Nucleic acids research (04.01.2016)
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Journal Article
RSAT 2015: Regulatory Sequence Analysis Tools
Medina-Rivera, Alejandra, Defrance, Matthieu, Sand, Olivier, Herrmann, Carl, Castro-Mondragon, Jaime A, Delerce, Jeremy, Jaeger, Sébastien, Blanchet, Christophe, Vincens, Pierre, Caron, Christophe, Staines, Daniel M, Contreras-Moreira, Bruno, Artufel, Marie, Charbonnier-Khamvongsa, Lucie, Hernandez, Céline, Thieffry, Denis, Thomas-Chollier, Morgane, van Helden, Jacques
Published in Nucleic acids research (01.07.2015)
Published in Nucleic acids research (01.07.2015)
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Journal Article
Genome-wide characterization of mammalian promoters with distal enhancer functions
Dao, Lan T M, Galindo-Albarrán, Ariel O, Castro-Mondragon, Jaime A, Andrieu-Soler, Charlotte, Medina-Rivera, Alejandra, Souaid, Charbel, Charbonnier, Guillaume, Griffon, Aurélien, Vanhille, Laurent, Stephen, Tharshana, Alomairi, Jaafar, Martin, David, Torres, Magali, Fernandez, Nicolas, Soler, Eric, van Helden, Jacques, Puthier, Denis, Spicuglia, Salvatore
Published in Nature genetics (01.07.2017)
Published in Nature genetics (01.07.2017)
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Journal Article
Cis-regulatory mutations associate with transcriptional and post-transcriptional deregulation of gene regulatory programs in cancers
Castro-Mondragon, Jaime A, Aure, Miriam Ragle, Lingjærde, Ole Christian, Langerød, Anita, Martens, John W M, Børresen-Dale, Anne-Lise, Kristensen, Vessela N, Mathelier, Anthony
Published in Nucleic acids research (28.11.2022)
Published in Nucleic acids research (28.11.2022)
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Journal Article
Epromoters function as a hub to recruit key transcription factors required for the inflammatory response
Santiago-Algarra, David, Souaid, Charbel, Singh, Himanshu, Dao, Lan T. M., Hussain, Saadat, Medina-Rivera, Alejandra, Ramirez-Navarro, Lucia, Castro-Mondragon, Jaime A., Sadouni, Nori, Charbonnier, Guillaume, Spicuglia, Salvatore
Published in Nature communications (18.11.2021)
Published in Nature communications (18.11.2021)
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Journal Article
Crosstalk between microRNA expression and DNA methylation drives the hormone-dependent phenotype of breast cancer
Aure, Miriam Ragle, Fleischer, Thomas, Bjørklund, Sunniva, Ankill, Jørgen, Castro-Mondragon, Jaime A, Børresen-Dale, Anne-Lise, Tost, Jörg, Sahlberg, Kristine K, Mathelier, Anthony, Tekpli, Xavier, Kristensen, Vessela N
Published in Genome medicine (29.04.2021)
Published in Genome medicine (29.04.2021)
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Journal Article
Effects of interventions on cerebral perfusion in the Alzheimer's disease spectrum: A systematic review
Marcolini, Sofia, Frentz, Ingeborg, Sanchez-Catasus, Carlos A., Mondragon, Jaime D., Feltes, Paula Kopschina, van der Hoorn, Anouk, Borra, Ronald J.H., Ikram, M. Arfan, Dierckx, Rudi A.J.O., De Deyn, Peter Paul
Published in Ageing research reviews (01.08.2022)
Published in Ageing research reviews (01.08.2022)
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Journal Article
RhizoBindingSites v2.0 Is a Bioinformatic Database of DNA Motifs Potentially Involved in Transcriptional Regulation Deduced From Their Genomic Sites
Taboada-Castro, Hermenegildo, Hernández-Álvarez, Alfredo José, Castro-Mondragón, Jaime A, Encarnación-Guevara, Sergio
Published in Bioinformatics and biology insights (01.01.2024)
Published in Bioinformatics and biology insights (01.01.2024)
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Journal Article
Cognitive Performance in Individuals With Changes in Metabolic Syndrome Status in the Lifelines Cohort Study
Marcolini, Sofia, Frentz, Ingeborg, Schneider, Charlotte, Mondragon, Jaime, De Deyn, Peter Paul
Published in Cerebral circulation - cognition and behavior (2024)
Published in Cerebral circulation - cognition and behavior (2024)
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