Genome and transcriptome mechanisms driving cephalopod evolution
Albertin, Caroline B., Medina-Ruiz, Sofia, Mitros, Therese, Schmidbaur, Hannah, Sanchez, Gustavo, Wang, Z. Yan, Grimwood, Jane, Rosenthal, Joshua J. C., Ragsdale, Clifton W., Simakov, Oleg, Rokhsar, Daniel S.
Published in Nature communications (04.05.2022)
Published in Nature communications (04.05.2022)
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Journal Article
The octopus genome and the evolution of cephalopod neural and morphological novelties
Albertin, Caroline B., Simakov, Oleg, Mitros, Therese, Wang, Z. Yan, Pungor, Judit R., Edsinger-Gonzales, Eric, Brenner, Sydney, Ragsdale, Clifton W., Rokhsar, Daniel S.
Published in Nature (London) (13.08.2015)
Published in Nature (London) (13.08.2015)
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Journal Article
Phytozome: a comparative platform for green plant genomics
Goodstein, David M., Shu, Shengqiang, Howson, Russell, Neupane, Rochak, Hayes, Richard D., Fazo, Joni, Mitros, Therese, Dirks, William, Hellsten, Uffe, Putnam, Nicholas , Rokhsar, Daniel S.
Published in Nucleic acids research (01.01.2012)
Published in Nucleic acids research (01.01.2012)
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Journal Article
Selection-free genome editing of the sickle mutation in human adult hematopoietic stem/progenitor cells
DeWitt, Mark A, Magis, Wendy, Bray, Nicolas L, Wang, Tianjiao, Berman, Jennifer R, Urbinati, Fabrizia, Heo, Seok-Jin, Mitros, Therese, Muñoz, Denise P, Boffelli, Dario, Kohn, Donald B, Walters, Mark C, Carroll, Dana, Martin, David I K, Corn, Jacob E
Published in Science translational medicine (12.10.2016)
Published in Science translational medicine (12.10.2016)
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Journal Article
Analysis of meiosis in Pristionchus pacificus reveals plasticity in homolog pairing and synapsis in the nematode lineage
Rillo-Bohn, Regina, Adilardi, Renzo, Mitros, Therese, Avşaroğlu, Barış, Stevens, Lewis, Köhler, Simone, Bayes, Joshua, Wang, Clara, Lin, Sabrina, Baskevitch, K Alienor, Rokhsar, Daniel S, Dernburg, Abby F
Published in eLife (24.08.2021)
Published in eLife (24.08.2021)
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Journal Article
The Amphimedon queenslandica genome and the evolution of animal complexity
Srivastava, Mansi, Degnan, Bernard M, Rokhsar, Daniel S, Simakov, Oleg, Chapman, Jarrod, Fahey, Bryony, Gauthier, Marie E. A, Mitros, Therese, Richards, Gemma S, Conaco, Cecilia, Dacre, Michael, Hellsten, Uffe, Larroux, Claire, Putnam, Nicholas H, Stanke, Mario, Adamska, Maja, Darling, Aaron, Degnan, Sandie M, Oakley, Todd H, Plachetzki, David C, Zhai, Yufeng, Adamski, Marcin, Calcino, Andrew, Cummins, Scott F, Goodstein, David M, Harris, Christina, Jackson, Daniel J, Leys, Sally P, Shu, Shengqiang, Woodcroft, Ben J, Vervoort, Michel, Kosik, Kenneth S, Manning, Gerard
Published in Nature (London) (05.08.2010)
Published in Nature (London) (05.08.2010)
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Journal Article
Genome sequence of the palaeopolyploid soybean
Schmutz, Jeremy, Cannon, Steven B, Schlueter, Jessica, Ma, Jianxin, Mitros, Therese, Nelson, William, Hyten, David L, Song, Qijian, Thelen, Jay J, Cheng, Jianlin, Xu, Dong, Hellsten, Uffe, Peto, Myron, Grant, David, Cregan, Perry, Shoemaker, Randy C
Published in Nature (London) (14.01.2010)
Published in Nature (London) (14.01.2010)
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Journal Article
Genome biology of the paleotetraploid perennial biomass crop Miscanthus
Mitros, Therese, Session, Adam M., James, Brandon T., Wu, Guohong Albert, Belaffif, Mohammad B., Clark, Lindsay V., Shu, Shengqiang, Dong, Hongxu, Barling, Adam, Holmes, Jessica R., Mattick, Jessica E., Bredeson, Jessen V., Liu, Siyao, Farrar, Kerrie, Głowacka, Katarzyna, Jeżowski, Stanisław, Barry, Kerrie, Chae, Won Byoung, Juvik, John A., Gifford, Justin, Oladeinde, Adebosola, Yamada, Toshihiko, Grimwood, Jane, Putnam, Nicholas H., De Vega, Jose, Barth, Susanne, Klaas, Manfred, Hodkinson, Trevor, Li, Laigeng, Jin, Xiaoli, Peng, Junhua, Yu, Chang Yeon, Heo, Kweon, Yoo, Ji Hye, Ghimire, Bimal Kumar, Donnison, Iain S., Schmutz, Jeremy, Hudson, Matthew E., Sacks, Erik J., Moose, Stephen P., Swaminathan, Kankshita, Rokhsar, Daniel S.
Published in Nature communications (28.10.2020)
Published in Nature communications (28.10.2020)
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Journal Article
A framework genetic map for Miscanthus sinensis from RNAseq-based markers shows recent tetraploidy
Swaminathan, Kankshita, Chae, Won Byoung, Mitros, Therese, Varala, Kranthi, Xie, Liang, Barling, Adam, Glowacka, Katarzyna, Hall, Megan, Jezowski, Stanislaw, Ming, Ray, Hudson, Matthew, Juvik, John A, Rokhsar, Daniel S, Moose, Stephen P
Published in BMC genomics (24.04.2012)
Published in BMC genomics (24.04.2012)
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Journal Article
Deeply conserved synteny and the evolution of metazoan chromosomes
Simakov, Oleg, Bredeson, Jessen, Berkoff, Kodiak, Marletaz, Ferdinand, Mitros, Therese, Schultz, Darrin T, O'Connell, Brendan L, Dear, Paul, Martinez, Daniel E, Steele, Robert E, Green, Richard E, David, Charles N, Rokhsar, Daniel S
Published in Science advances (02.02.2022)
Published in Science advances (02.02.2022)
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Journal Article
A chromosome-scale genome assembly and dense genetic map for Xenopus tropicalis
Mitros, Therese, Lyons, Jessica B., Session, Adam M., Jenkins, Jerry, Shu, Shengquiang, Kwon, Taejoon, Lane, Maura, Ng, Connie, Grammer, Timothy C., Khokha, Mustafa K., Grimwood, Jane, Schmutz, Jeremy, Harland, Richard M., Rokhsar, Daniel S.
Published in Developmental biology (01.08.2019)
Published in Developmental biology (01.08.2019)
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Journal Article
The Trichoplax genome and the nature of placozoans
Carpenter, Meredith L, Signorovitch, Ana Y, Schmutz, Jeremy, Grimwood, Jane, Grigoriev, Igor V, Mitros, Therese, Putnam, Nicholas H, Kawashima, Takeshi, Moreno, Maria A, Buss, Leo W, Srivastava, Mansi, Rokhsar, Daniel S, Begovic, Emina, Shapiro, Harris, Kamm, Kai, Chapman, Jarrod, Hellsten, Uffe, Kuo, Alan, Dellaporta, Stephen L, Salamov, Asaf, Schierwater, Bernd
Published in Nature (21.08.2008)
Published in Nature (21.08.2008)
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Journal Article
Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs
Bredeson, Jessen V., Mudd, Austin B., Medina-Ruiz, Sofia, Mitros, Therese, Smith, Owen Kabnick, Miller, Kelly E., Lyons, Jessica B., Batra, Sanjit S., Park, Joseph, Berkoff, Kodiak C., Plott, Christopher, Grimwood, Jane, Schmutz, Jeremy, Aguirre-Figueroa, Guadalupe, Khokha, Mustafa K., Lane, Maura, Philipp, Isabelle, Laslo, Mara, Hanken, James, Kerdivel, Gwenneg, Buisine, Nicolas, Sachs, Laurent M., Buchholz, Daniel R., Kwon, Taejoon, Smith-Parker, Heidi, Gridi-Papp, Marcos, Ryan, Michael J., Denton, Robert D., Malone, John H., Wallingford, John B., Straight, Aaron F., Heald, Rebecca, Hockemeyer, Dirk, Harland, Richard M., Rokhsar, Daniel S.
Published in Nature communications (17.01.2024)
Published in Nature communications (17.01.2024)
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Journal Article
Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism
Opperman, Charles H, Bird, David M, Williamson, Valerie M, Rokhsar, Dan S, Burke, Mark, Cohn, Jonathan, Cromer, John, Diener, Steve, Gajan, Jim, Graham, Steve, Houfek, T.D, Liu, Qingli, Mitros, Therese, Schaff, Jennifer, Schaffer, Reenah, Scholl, Elizabeth, Sosinski, Bryon R, Thomas, Varghese P, Windham, Eric
Published in Proceedings of the National Academy of Sciences - PNAS (30.09.2008)
Published in Proceedings of the National Academy of Sciences - PNAS (30.09.2008)
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Journal Article
The CUL5 ubiquitin ligase complex mediates resistance to CDK9 and MCL1 inhibitors in lung cancer cells
Kabir, Shaheen, Cidado, Justin, Andersen, Courtney, Dick, Cortni, Lin, Pei-Chun, Mitros, Therese, Ma, Hong, Baik, Seung Hyun, Belmonte, Matthew A, Drew, Lisa, Corn, Jacob E
Published in eLife (11.07.2019)
Published in eLife (11.07.2019)
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Journal Article
Using multiple structure alignments, fast model building, and energetic analysis in fold recognition and homology modeling
Petrey, Donald, Xiang, Zhexin, Tang, Christopher L., Xie, Lei, Gimpelev, Marina, Mitros, Therese, Soto, Cinque S., Goldsmith-Fischman, Sharon, Kernytsky, Andrew, Schlessinger, Avner, Koh, Ingrid Y.Y., Alexov, Emil, Honig, Barry
Published in Proteins, structure, function, and bioinformatics (2003)
Published in Proteins, structure, function, and bioinformatics (2003)
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Journal Article
Domains 2 and 3 Interact to Form Critical Elements of the Group II Intron Active Site
Fedorova, Olga, Mitros, Therese, Pyle, Anna Marie
Published in Journal of molecular biology (04.07.2003)
Published in Journal of molecular biology (04.07.2003)
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Journal Article
Genome evolution in the allotetraploid frog Xenopus laevis
Session, Adam M., Uno, Yoshinobu, Kwon, Taejoon, Chapman, Jarrod A., Toyoda, Atsushi, Takahashi, Shuji, Fukui, Akimasa, Hikosaka, Akira, Suzuki, Atsushi, Kondo, Mariko, van Heeringen, Simon J., Quigley, Ian, Heinz, Sven, Ogino, Hajime, Ochi, Haruki, Hellsten, Uffe, Lyons, Jessica B., Simakov, Oleg, Putnam, Nicholas, Stites, Jonathan, Kuroki, Yoko, Tanaka, Toshiaki, Michiue, Tatsuo, Watanabe, Minoru, Bogdanovic, Ozren, Lister, Ryan, Georgiou, Georgios, Paranjpe, Sarita S., van Kruijsbergen, Ila, Shu, Shengquiang, Carlson, Joseph, Kinoshita, Tsutomu, Ohta, Yuko, Mawaribuchi, Shuuji, Jenkins, Jerry, Grimwood, Jane, Schmutz, Jeremy, Mitros, Therese, Mozaffari, Sahar V., Suzuki, Yutaka, Haramoto, Yoshikazu, Yamamoto, Takamasa S., Takagi, Chiyo, Heald, Rebecca, Miller, Kelly, Haudenschild, Christian, Kitzman, Jacob, Nakayama, Takuya, Izutsu, Yumi, Robert, Jacques, Fortriede, Joshua, Burns, Kevin, Lotay, Vaneet, Karimi, Kamran, Yasuoka, Yuuri, Dichmann, Darwin S., Flajnik, Martin F., Houston, Douglas W., Shendure, Jay, DuPasquier, Louis, Vize, Peter D., Zorn, Aaron M., Ito, Michihiko, Marcotte, Edward M., Wallingford, John B., Ito, Yuzuru, Asashima, Makoto, Ueno, Naoto, Matsuda, Yoichi, Veenstra, Gert Jan C., Fujiyama, Asao, Harland, Richard M., Taira, Masanori, Rokhsar, Daniel S.
Published in Nature (London) (20.10.2016)
Published in Nature (London) (20.10.2016)
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Journal Article
The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution
Verde, Ignazio, Abbott, Albert G, Scalabrin, Simone, Jung, Sook, Shu, Shengqiang, Marroni, Fabio, Zhebentyayeva, Tatyana, Dettori, Maria Teresa, Grimwood, Jane, Cattonaro, Federica, Zuccolo, Andrea, Rossini, Laura, Jenkins, Jerry, Vendramin, Elisa, Meisel, Lee A, Decroocq, Veronique, Sosinski, Bryon, Prochnik, Simon, Mitros, Therese, Policriti, Alberto, Cipriani, Guido, Dondini, Luca, Ficklin, Stephen, Goodstein, David M, Xuan, Pengfei, Fabbro, Cristian Del, Aramini, Valeria, Copetti, Dario, Gonzalez, Susana, Horner, David S, Falchi, Rachele, Lucas, Susan, Mica, Erica, Maldonado, Jonathan, Lazzari, Barbara, Bielenberg, Douglas, Pirona, Raul, Miculan, Mara, Barakat, Abdelali, Testolin, Raffaele, Stella, Alessandra, Tartarini, Stefano, Tonutti, Pietro, Arús, Pere, Orellana, Ariel, Wells, Christina, Main, Dorrie, Vizzotto, Giannina, Silva, Herman, Salamini, Francesco, Schmutz, Jeremy, Morgante, Michele, Rokhsar, Daniel S
Published in Nature genetics (01.05.2013)
Published in Nature genetics (01.05.2013)
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Journal Article
Three founding ancestral genomes involved in the origin of sugarcane
Pompidor, Nicolas, Charron, Carine, Hervouet, Catherine, Bocs, Stéphanie, Droc, Gaëtan, Rivallan, Ronan, Manez, Aurore, Mitros, Therese, Swaminathan, Kankshita, Glaszmann, Jean-Christophe, Garsmeur, Olivier, D'Hont, Angélique
Published in Annals of botany (07.05.2021)
Published in Annals of botany (07.05.2021)
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