Elevated temperature drives kelp microbiome dysbiosis, while elevated carbon dioxide induces water microbiome disruption
Minich, Jeremiah J, Morris, Megan M, Brown, Matt, Doane, Michael, Edwards, Matthew S, Michael, Todd P, Dinsdale, Elizabeth A
Published in PloS one (23.02.2018)
Published in PloS one (23.02.2018)
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Journal Article
Microbiome 101: Studying, Analyzing, and Interpreting Gut Microbiome Data for Clinicians
Allaband, Celeste, McDonald, Daniel, Vázquez-Baeza, Yoshiki, Minich, Jeremiah J., Tripathi, Anupriya, Brenner, David A., Loomba, Rohit, Smarr, Larry, Sandborn, William J., Schnabl, Bernd, Dorrestein, Pieter, Zarrinpar, Amir, Knight, Rob
Published in Clinical gastroenterology and hepatology (01.01.2019)
Published in Clinical gastroenterology and hepatology (01.01.2019)
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Journal Article
Microbial Ecology of Atlantic Salmon (Salmo salar) Hatcheries: Impacts of the Built Environment on Fish Mucosal Microbiota
Minich, Jeremiah J, Poore, Greg D, Jantawongsri, Khattapan, Johnston, Colin, Bowie, Kate, Bowman, John, Knight, Rob, Nowak, Barbara, Allen, Eric E
Published in Applied and environmental microbiology (02.06.2020)
Published in Applied and environmental microbiology (02.06.2020)
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Journal Article
Host biology, ecology and the environment influence microbial biomass and diversity in 101 marine fish species
Minich, Jeremiah J, Härer, Andreas, Vechinski, Joseph, Frable, Benjamin W, Skelton, Zachary R, Kunselman, Emily, Shane, Michael A, Perry, Daniela S, Gonzalez, Antonio, McDonald, Daniel, Knight, Rob, Michael, Todd P, Allen, Eric E
Published in Nature communications (17.11.2022)
Published in Nature communications (17.11.2022)
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Journal Article
A comparison of six DNA extraction protocols for 16S, ITS and shotgun metagenomic sequencing of microbial communities
Shaffer, Justin P, Carpenter, Carolina S, Martino, Cameron, Salido, Rodolfo A, Minich, Jeremiah J, Bryant, MacKenzie, Sanders, Karenina, Schwartz, Tara, Humphrey, Gregory, Swafford, Austin D, Knight, Rob
Published in BioTechniques (01.06.2022)
Published in BioTechniques (01.06.2022)
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Journal Article
Quantifying and Understanding Well-to-Well Contamination in Microbiome Research
Minich, Jeremiah J, Sanders, Jon G, Amir, Amnon, Humphrey, Greg, Gilbert, Jack A, Knight, Rob
Published in mSystems (25.06.2019)
Published in mSystems (25.06.2019)
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Journal Article
Non-targeted tandem mass spectrometry enables the visualization of organic matter chemotype shifts in coastal seawater
Petras, Daniel, Minich, Jeremiah J., Cancelada, Lucia B., Torres, Ralph R., Kunselman, Emily, Wang, Mingxun, White, Margot E., Allen, Eric E., Prather, Kimberly A., Aluwihare, Lihini I., Dorrestein, Pieter C.
Published in Chemosphere (Oxford) (01.05.2021)
Published in Chemosphere (Oxford) (01.05.2021)
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Journal Article
Characterization of the total and viable bacterial and fungal communities associated with the International Space Station surfaces
Checinska Sielaff, Aleksandra, Urbaniak, Camilla, Mohan, Ganesh Babu Malli, Stepanov, Victor G, Tran, Quyen, Wood, Jason M, Minich, Jeremiah, McDonald, Daniel, Mayer, Teresa, Knight, Rob, Karouia, Fathi, Fox, George E, Venkateswaran, Kasthuri
Published in Microbiome (08.04.2019)
Published in Microbiome (08.04.2019)
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Journal Article
A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities
Shaffer, Justin P, Marotz, Clarisse, Belda-Ferre, Pedro, Martino, Cameron, Wandro, Stephen, Estaki, Mehrbod, Salido, Rodolfo A, Carpenter, Carolina S, Zaramela, Livia S, Minich, Jeremiah J, Bryant, MacKenzie, Sanders, Karenina, Fraraccio, Serena, Ackermann, Gail, Humphrey, Gregory, Swafford, Austin D, Miller-Montgomery, Sandrine, Knight, Rob
Published in BioTechniques (01.03.2021)
Published in BioTechniques (01.03.2021)
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Journal Article
KatharoSeq Enables High-Throughput Microbiome Analysis from Low-Biomass Samples
Minich, Jeremiah J, Zhu, Qiyun, Janssen, Stefan, Hendrickson, Ryan, Amir, Amnon, Vetter, Russ, Hyde, John, Doty, Megan M, Stillwell, Kristina, Benardini, James, Kim, Jae H, Allen, Eric E, Venkateswaran, Kasthuri, Knight, Rob
Published in mSystems (01.05.2018)
Published in mSystems (01.05.2018)
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Journal Article
Atlantic Salmon (Salmo salar L., 1758) Gut Microbiota Profile Correlates with Flesh Pigmentation: Cause or Effect?
Nguyen, Chan D. H., Amoroso, Gianluca, Ventura, Tomer, Minich, Jeremiah J., Elizur, Abigail
Published in Marine biotechnology (New York, N.Y.) (01.12.2020)
Published in Marine biotechnology (New York, N.Y.) (01.12.2020)
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Journal Article
Home chemical and microbial transitions across urbanization
McCall, Laura-Isobel, Callewaert, Chris, Zhu, Qiyun, Song, Se Jin, Bouslimani, Amina, Minich, Jeremiah J, Ernst, Madeleine, Ruiz-Calderon, Jean F, Cavallin, Humberto, Pereira, Henrique S, Novoselac, Atila, Hernandez, Jean, Rios, Rafael, Branch, OraLee H, Blaser, Martin J, Paulino, Luciana C, Dorrestein, Pieter C, Knight, Rob, Dominguez-Bello, Maria G
Published in Nature microbiology (01.01.2020)
Published in Nature microbiology (01.01.2020)
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Journal Article
The Southern Bluefin Tuna Mucosal Microbiome Is Influenced by Husbandry Method, Net Pen Location, and Anti-parasite Treatment
Minich, Jeremiah J, Power, Cecilia, Melanson, Michaela, Knight, Rob, Webber, Claire, Rough, Kirsten, Bott, Nathan J, Nowak, Barbara, Allen, Eric E
Published in Frontiers in microbiology (24.08.2020)
Published in Frontiers in microbiology (24.08.2020)
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Journal Article
Clean room microbiome complexity impacts planetary protection bioburden
Hendrickson, Ryan, Urbaniak, Camilla, Minich, Jeremiah J, Aronson, Heidi S, Martino, Cameron, Stepanauskas, Ramunas, Knight, Rob, Venkateswaran, Kasthuri
Published in Microbiome (04.12.2021)
Published in Microbiome (04.12.2021)
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Journal Article
Impacts of the Marine Hatchery Built Environment, Water and Feed on Mucosal Microbiome Colonization Across Ontogeny in Yellowtail Kingfish, Seriola lalandi
Minich, Jeremiah J, Nowak, Barbara, Elizur, Abigail, Knight, Rob, Fielder, Stewart, Allen, Eric E
Published in Frontiers in Marine Science (13.05.2021)
Published in Frontiers in Marine Science (13.05.2021)
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Journal Article
Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads
Sanders, Jon G, Nurk, Sergey, Salido, Rodolfo A, Minich, Jeremiah, Xu, Zhenjiang Z, Zhu, Qiyun, Martino, Cameron, Fedarko, Marcus, Arthur, Timothy D, Chen, Feng, Boland, Brigid S, Humphrey, Greg C, Brennan, Caitriona, Sanders, Karenina, Gaffney, James, Jepsen, Kristen, Khosroheidari, Mahdieh, Green, Cliff, Liyanage, Marlon, Dang, Jason W, Phelan, Vanessa V, Quinn, Robert A, Bankevich, Anton, Chang, John T, Rana, Tariq M, Conrad, Douglas J, Sandborn, William J, Smarr, Larry, Dorrestein, Pieter C, Pevzner, Pavel A, Knight, Rob
Published in Genome Biology (31.10.2019)
Published in Genome Biology (31.10.2019)
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Journal Article
Improved multiple displacement amplification (iMDA) and ultraclean reagents
Motley, S Timothy, Picuri, John M, Crowder, Chris D, Minich, Jeremiah J, Hofstadler, Steven A, Eshoo, Mark W
Published in BMC genomics (06.06.2014)
Published in BMC genomics (06.06.2014)
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Journal Article
High-Throughput Miniaturized 16S rRNA Amplicon Library Preparation Reduces Costs while Preserving Microbiome Integrity
Minich, Jeremiah J, Humphrey, Greg, Benitez, Rodolfo A S, Sanders, Jon, Swafford, Austin, Allen, Eric E, Knight, Rob
Published in mSystems (01.11.2018)
Published in mSystems (01.11.2018)
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Journal Article