Conservation and divergence of cortical cell organization in human and mouse revealed by MERFISH
Fang, Rongxin, Xia, Chenglong, Close, Jennie L, Zhang, Meng, He, Jiang, Huang, Zhengkai, Halpern, Aaron R, Long, Brian, Miller, Jeremy A, Lein, Ed S, Zhuang, Xiaowei
Published in Science (American Association for the Advancement of Science) (01.07.2022)
Published in Science (American Association for the Advancement of Science) (01.07.2022)
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Journal Article
Strategies for aggregating gene expression data: the collapseRows R function
Miller, Jeremy A, Cai, Chaochao, Langfelder, Peter, Geschwind, Daniel H, Kurian, Sunil M, Salomon, Daniel R, Horvath, Steve
Published in BMC bioinformatics (04.08.2011)
Published in BMC bioinformatics (04.08.2011)
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Journal Article
Transcriptomic and morphophysiological evidence for a specialized human cortical GABAergic cell type
Boldog, Eszter, Bakken, Trygve E., Hodge, Rebecca D., Novotny, Mark, Aevermann, Brian D., Baka, Judith, Bordé, Sándor, Close, Jennie L., Diez-Fuertes, Francisco, Ding, Song-Lin, Faragó, Nóra, Kocsis, Ágnes K., Kovács, Balázs, Maltzer, Zoe, McCorrison, Jamison M., Miller, Jeremy A., Molnár, Gábor, Oláh, Gáspár, Ozsvár, Attila, Rózsa, Márton, Shehata, Soraya I., Smith, Kimberly A., Sunkin, Susan M., Tran, Danny N., Venepally, Pratap, Wall, Abby, Puskás, László G., Barzó, Pál, Steemers, Frank J., Schork, Nicholas J., Scheuermann, Richard H., Lasken, Roger S., Lein, Ed S., Tamás, Gábor
Published in Nature neuroscience (01.09.2018)
Published in Nature neuroscience (01.09.2018)
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Journal Article
Genes and pathways underlying regional and cell type changes in Alzheimer's disease
Miller, Jeremy A, Woltjer, Randall L, Goodenbour, Jeff M, Horvath, Steve, Geschwind, Daniel H
Published in Genome medicine (25.05.2013)
Published in Genome medicine (25.05.2013)
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Journal Article
Induction of a common microglia gene expression signature by aging and neurodegenerative conditions: a co-expression meta-analysis
Holtman, Inge R, Raj, Divya D, Miller, Jeremy A, Schaafsma, Wandert, Yin, Zhuoran, Brouwer, Nieske, Wes, Paul D, Möller, Thomas, Orre, Marie, Kamphuis, Willem, Hol, Elly M, Boddeke, Erik W G M, Eggen, Bart J L
Published in Acta neuropathologica communications (23.05.2015)
Published in Acta neuropathologica communications (23.05.2015)
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Journal Article
Single-cell transcriptomic evidence for dense intracortical neuropeptide networks
Smith, Stephen J, Sümbül, Uygar, Graybuck, Lucas T, Collman, Forrest, Seshamani, Sharmishtaa, Gala, Rohan, Gliko, Olga, Elabbady, Leila, Miller, Jeremy A, Bakken, Trygve E, Rossier, Jean, Yao, Zizhen, Lein, Ed, Zeng, Hongkui, Tasic, Bosiljka, Hawrylycz, Michael
Published in eLife (11.11.2019)
Published in eLife (11.11.2019)
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Journal Article
Common cell type nomenclature for the mammalian brain
Miller, Jeremy A, Gouwens, Nathan W, Tasic, Bosiljka, Collman, Forrest, van Velthoven, Cindy Tj, Bakken, Trygve E, Hawrylycz, Michael J, Zeng, Hongkui, Lein, Ed S, Bernard, Amy
Published in eLife (29.12.2020)
Published in eLife (29.12.2020)
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Journal Article
Parallel RNA and DNA analysis after deep sequencing (PRDD-seq) reveals cell type-specific lineage patterns in human brain
Huang, August Yue, Li, Pengpeng, Rodin, Rachel E., Kim, Sonia N., Dou, Yanmei, Kenny, Connor J., Akula, Shyam K., Hodge, Rebecca D., Bakken, Trygve E., Miller, Jeremy A., Lein, Ed S., Park, Peter J., Lee, Eunjung Alice, Walsh, Christopher A.
Published in Proceedings of the National Academy of Sciences - PNAS (23.06.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (23.06.2020)
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Journal Article
A comparison of anatomic and cellular transcriptome structures across 40 human brain diseases
Zeighami, Yashar, Bakken, Trygve E, Nickl-Jockschat, Thomas, Peterson, Zeru, Jegga, Anil G, Miller, Jeremy A, Schulkin, Jay, Evans, Alan C, Lein, Ed S, Hawrylycz, Michael
Published in PLoS biology (20.04.2023)
Published in PLoS biology (20.04.2023)
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Journal Article
RiboTag analysis of actively translated mRNAs in Sertoli and Leydig cells in vivo
Sanz, Elisenda, Evanoff, Ryan, Quintana, Albert, Evans, Elizabeth, Miller, Jeremy A, Ko, Chemyong, Amieux, Paul S, Griswold, Michael D, McKnight, G Stanley
Published in PloS one (11.06.2013)
Published in PloS one (11.06.2013)
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Journal Article
Correlated gene expression and target specificity demonstrate excitatory projection neuron diversity
Sorensen, Staci A, Bernard, Amy, Menon, Vilas, Royall, Joshua J, Glattfelder, Katie J, Desta, Tsega, Hirokawa, Karla, Mortrud, Marty, Miller, Jeremy A, Zeng, Hongkui, Hohmann, John G, Jones, Allan R, Lein, Ed S
Published in Cerebral cortex (New York, N.Y. 1991) (01.02.2015)
Published in Cerebral cortex (New York, N.Y. 1991) (01.02.2015)
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Journal Article
Cell type discovery and representation in the era of high-content single cell phenotyping
Bakken, Trygve, Cowell, Lindsay, Aevermann, Brian D, Novotny, Mark, Hodge, Rebecca, Miller, Jeremy A, Lee, Alexandra, Chang, Ivan, McCorrison, Jamison, Pulendran, Bali, Qian, Yu, Schork, Nicholas J, Lasken, Roger S, Lein, Ed S, Scheuermann, Richard H
Published in BMC bioinformatics (21.12.2017)
Published in BMC bioinformatics (21.12.2017)
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Journal Article
Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain
Zhang, Yun, Miller, Jeremy A., Park, Jeongbin, Lelieveldt, Boudewijn P., Long, Brian, Abdelaal, Tamim, Aevermann, Brian D., Biancalani, Tommaso, Comiter, Charles, Dzyubachyk, Oleh, Eggermont, Jeroen, Langseth, Christoffer Mattsson, Petukhov, Viktor, Scalia, Gabriele, Vaishnav, Eeshit Dhaval, Zhao, Yilin, Lein, Ed S., Scheuermann, Richard H.
Published in Scientific reports (13.06.2023)
Published in Scientific reports (13.06.2023)
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Journal Article
Sex differences in immune protection in mice conferred by heterologous vaccines for pneumonic plague
Davies, Michael L, Biryukov, Sergei S, Rill, Nathaniel O, Klimko, Christopher P, Hunter, Melissa, Dankmeyer, Jennifer L, Miller, Jeremy A, Shoe, Jennifer L, Mlynek, Kevin D, Talyansky, Yuli, Toothman, Ronald G, Qiu, Ju, Bozue, Joel A, Cote, Christopher K
Published in Frontiers in immunology (21.05.2024)
Published in Frontiers in immunology (21.05.2024)
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