ReadDepth: a parallel R package for detecting copy number alterations from short sequencing reads
Miller, Christopher A, Hampton, Oliver, Coarfa, Cristian, Milosavljevic, Aleksandar
Published in PloS one (31.01.2011)
Published in PloS one (31.01.2011)
Get full text
Journal Article
VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing
Koboldt, Daniel C, Zhang, Qunyuan, Larson, David E, Shen, Dong, McLellan, Michael D, Lin, Ling, Miller, Christopher A, Mardis, Elaine R, Ding, Li, Wilson, Richard K
Published in Genome research (01.03.2012)
Published in Genome research (01.03.2012)
Get full text
Journal Article
Mutational landscape and significance across 12 major cancer types
Kandoth, Cyriac, McLellan, Michael D., Vandin, Fabio, Ye, Kai, Niu, Beifang, Lu, Charles, Xie, Mingchao, Zhang, Qunyuan, McMichael, Joshua F., Wyczalkowski, Matthew A., Leiserson, Mark D. M., Miller, Christopher A., Welch, John S., Walter, Matthew J., Wendl, Michael C., Ley, Timothy J., Wilson, Richard K., Raphael, Benjamin J., Ding, Li
Published in Nature (London) (17.10.2013)
Published in Nature (London) (17.10.2013)
Get full text
Journal Article
A general approach for detecting expressed mutations in AML cells using single cell RNA-sequencing
Petti, Allegra A., Williams, Stephen R., Miller, Christopher A., Fiddes, Ian T., Srivatsan, Sridhar N., Chen, David Y., Fronick, Catrina C., Fulton, Robert S., Church, Deanna M., Ley, Timothy J.
Published in Nature communications (14.08.2019)
Published in Nature communications (14.08.2019)
Get full text
Journal Article
The R882H DNMT3A Mutation Associated with AML Dominantly Inhibits Wild-Type DNMT3A by Blocking Its Ability to Form Active Tetramers
Russler-Germain, David A., Spencer, David H., Young, Margaret A., Lamprecht, Tamara L., Miller, Christopher A., Fulton, Robert, Meyer, Matthew R., Erdmann-Gilmore, Petra, Townsend, R. Reid, Wilson, Richard K., Ley, Timothy J.
Published in Cancer cell (14.04.2014)
Published in Cancer cell (14.04.2014)
Get full text
Journal Article
Recurrent somatic mutations affecting B-cell receptor signaling pathway genes in follicular lymphoma
Krysiak, Kilannin, Gomez, Felicia, White, Brian S., Matlock, Matthew, Miller, Christopher A., Trani, Lee, Fronick, Catrina C., Fulton, Robert S., Kreisel, Friederike, Cashen, Amanda F., Carson, Kenneth R., Berrien-Elliott, Melissa M., Bartlett, Nancy L., Griffith, Malachi, Griffith, Obi L., Fehniger, Todd A.
Published in Blood (26.01.2017)
Published in Blood (26.01.2017)
Get full text
Journal Article
Functional Heterogeneity of Genetically Defined Subclones in Acute Myeloid Leukemia
Klco, Jeffery M., Spencer, David H., Miller, Christopher A., Griffith, Malachi, Lamprecht, Tamara L., O’Laughlin, Michelle, Fronick, Catrina, Magrini, Vincent, Demeter, Ryan T., Fulton, Robert S., Eades, William C., Link, Daniel C., Graubert, Timothy A., Walter, Matthew J., Mardis, Elaine R., Dipersio, John F., Wilson, Richard K., Ley, Timothy J.
Published in Cancer cell (17.03.2014)
Published in Cancer cell (17.03.2014)
Get full text
Journal Article
Genomic analysis of germ line and somatic variants in familial myelodysplasia/acute myeloid leukemia
Churpek, Jane E., Pyrtel, Khateriaa, Kanchi, Krishna-Latha, Shao, Jin, Koboldt, Daniel, Miller, Christopher A., Shen, Dong, Fulton, Robert, O’Laughlin, Michelle, Fronick, Catrina, Pusic, Iskra, Uy, Geoffrey L., Braunstein, Evan M., Levis, Mark, Ross, Julie, Elliott, Kevin, Heath, Sharon, Jiang, Allan, Westervelt, Peter, DiPersio, John F., Link, Daniel C., Walter, Matthew J., Welch, John, Wilson, Richard, Ley, Timothy J., Godley, Lucy A., Graubert, Timothy A.
Published in Blood (26.11.2015)
Published in Blood (26.11.2015)
Get full text
Journal Article
SciClone: inferring clonal architecture and tracking the spatial and temporal patterns of tumor evolution
Miller, Christopher A, White, Brian S, Dees, Nathan D, Griffith, Malachi, Welch, John S, Griffith, Obi L, Vij, Ravi, Tomasson, Michael H, Graubert, Timothy A, Walter, Matthew J, Ellis, Matthew J, Schierding, William, DiPersio, John F, Ley, Timothy J, Mardis, Elaine R, Wilson, Richard K, Ding, Li
Published in PLoS computational biology (01.08.2014)
Published in PLoS computational biology (01.08.2014)
Get full text
Journal Article
Somatic mutations and clonal hematopoiesis in congenital neutropenia
Xia, Jun, Miller, Christopher A., Baty, Jack, Ramesh, Amrita, Jotte, Matthew R.M., Fulton, Robert S., Vogel, Tiphanie P., Cooper, Megan A., Walkovich, Kelly J., Makaryan, Vahagn, Bolyard, Audrey A., Dinauer, Mary C., Wilson, David B., Vlachos, Adrianna, Myers, Kasiani C., Rothbaum, Robert J., Bertuch, Alison A., Dale, David C., Shimamura, Akiko, Boxer, Laurence A., Link, Daniel C.
Published in Blood (25.01.2018)
Published in Blood (25.01.2018)
Get full text
Journal Article
Comprehensive validation of cardiovascular magnetic resonance techniques for the assessment of myocardial extracellular volume
Miller, Christopher A, Naish, Josephine H, Bishop, Paul, Coutts, Glyn, Clark, David, Zhao, Sha, Ray, Simon G, Yonan, Nizar, Williams, Simon G, Flett, Andrew S, Moon, James C, Greiser, Andreas, Parker, Geoffrey J M, Schmitt, Matthias
Published in Circulation. Cardiovascular imaging (01.05.2013)
Published in Circulation. Cardiovascular imaging (01.05.2013)
Get full text
Journal Article
pVACtools: A Computational Toolkit to Identify and Visualize Cancer Neoantigens
Hundal, Jasreet, Kiwala, Susanna, McMichael, Joshua, Miller, Christopher A, Xia, Huiming, Wollam, Alexander T, Liu, Connor J, Zhao, Sidi, Feng, Yang-Yang, Graubert, Aaron P, Wollam, Amber Z, Neichin, Jonas, Neveau, Megan, Walker, Jason, Gillanders, William E, Mardis, Elaine R, Griffith, Obi L, Griffith, Malachi
Published in Cancer immunology research (01.03.2020)
Published in Cancer immunology research (01.03.2020)
Get more information
Journal Article
Haploinsufficiency for DNA methyltransferase 3A predisposes hematopoietic cells to myeloid malignancies
Cole, Christopher B, Russler-Germain, David A, Ketkar, Shamika, Verdoni, Angela M, Smith, Amanda M, Bangert, Celia V, Helton, Nichole M, Guo, Mindy, Klco, Jeffery M, O'Laughlin, Shelly, Fronick, Catrina, Fulton, Robert, Chang, Gue Su, Petti, Allegra A, Miller, Christopher A, Ley, Timothy J
Published in The Journal of clinical investigation (01.10.2017)
Published in The Journal of clinical investigation (01.10.2017)
Get full text
Journal Article
Tumor Evolution in Two Patients with Basal-like Breast Cancer: A Retrospective Genomics Study of Multiple Metastases
Hoadley, Katherine A, Siegel, Marni B, Kanchi, Krishna L, Miller, Christopher A, Ding, Li, Zhao, Wei, He, Xiaping, Parker, Joel S, Wendl, Michael C, Fulton, Robert S, Demeter, Ryan T, Wilson, Richard K, Carey, Lisa A, Perou, Charles M, Mardis, Elaine R
Published in PLoS medicine (06.12.2016)
Published in PLoS medicine (06.12.2016)
Get full text
Journal Article
Rapid expansion of preexisting nonleukemic hematopoietic clones frequently follows induction therapy for de novo AML
Wong, Terrence N., Miller, Christopher A., Klco, Jeffery M., Petti, Allegra, Demeter, Ryan, Helton, Nichole M., Li, Tiandao, Fulton, Robert S., Heath, Sharon E., Mardis, Elaine R., Westervelt, Peter, DiPersio, John F., Walter, Matthew J., Welch, John S., Graubert, Timothy A., Wilson, Richard K., Ley, Timothy J., Link, Daniel C.
Published in Blood (18.02.2016)
Published in Blood (18.02.2016)
Get full text
Journal Article
Functional and epigenetic phenotypes of humans and mice with DNMT3A Overgrowth Syndrome
Smith, Amanda M., LaValle, Taylor A., Shinawi, Marwan, Ramakrishnan, Sai M., Abel, Haley J., Hill, Cheryl A., Kirkland, Nicole M., Rettig, Michael P., Helton, Nichole M., Heath, Sharon E., Ferraro, Francesca, Chen, David Y., Adak, Sangeeta, Semenkovich, Clay F., Christian, Diana L., Martin, Jenna R., Gabel, Harrison W., Miller, Christopher A., Ley, Timothy J.
Published in Nature communications (27.07.2021)
Published in Nature communications (27.07.2021)
Get full text
Journal Article
Molecular responses in decitabine- and decitabine/ venetoclax-treated patients with acute myeloid leukemia and myelodysplastic syndromes
Gruszczynska, Agata, Maiti, Abhishek, Miller, Christopher A, Ramakrishnan, Sai Mukund, Link, Daniel C, Uy, Geoffrey L, Petti, Allegra A, Hayes, Kala, DiNardo, Courtney D, Ravandi, Farhad, Ley, Timothy J, Spencer, David H, Gao, Feng, Konopleva, Marina Y, Welch, John S
Published in Haematologica (Roma) (01.08.2024)
Published in Haematologica (Roma) (01.08.2024)
Get full text
Journal Article
Myocardial Fibrosis Quantified by Extracellular Volume Is Associated With Subsequent Hospitalization for Heart Failure, Death, or Both Across the Spectrum of Ejection Fraction and Heart Failure Stage
Schelbert, Erik B, Piehler, Kayla M, Zareba, Karolina M, Moon, James C, Ugander, Martin, Messroghli, Daniel R, Valeti, Uma S, Chang, Chung-Chou H, Shroff, Sanjeev G, Diez, Javier, Miller, Christopher A, Schmitt, Matthias, Kellman, Peter, Butler, Javed, Gheorghiade, Mihai, Wong, Timothy C
Published in Journal of the American Heart Association (01.12.2015)
Published in Journal of the American Heart Association (01.12.2015)
Get full text
Journal Article