PCR-induced transitions are the major source of error in cleaned ultra-deep pyrosequencing data
Brodin, Johanna, Mild, Mattias, Hedskog, Charlotte, Sherwood, Ellen, Leitner, Thomas, Andersson, Björn, Albert, Jan
Published in PloS one (23.07.2013)
Published in PloS one (23.07.2013)
Get full text
Journal Article
Dynamics of HIV-1 quasispecies during antiviral treatment dissected using ultra-deep pyrosequencing
Hedskog, Charlotte, Mild, Mattias, Jernberg, Johanna, Sherwood, Ellen, Bratt, Göran, Leitner, Thomas, Lundeberg, Joakim, Andersson, Björn, Albert, Jan
Published in PloS one (07.07.2010)
Published in PloS one (07.07.2010)
Get full text
Journal Article
Performance of ultra-deep pyrosequencing in analysis of HIV-1 pol gene variation
Mild, Mattias, Hedskog, Charlotte, Jernberg, Johanna, Albert, Jan
Published in PloS one (25.07.2011)
Published in PloS one (25.07.2011)
Get full text
Journal Article
HIV-1 molecular epidemiology in Guinea-Bissau, West Africa: origin, demography and migrations
Esbjörnsson, Joakim, Mild, Mattias, Månsson, Fredrik, Norrgren, Hans, Medstrand, Patrik
Published in PloS one (18.02.2011)
Published in PloS one (18.02.2011)
Get full text
Journal Article
Low prevalence of transmitted drug resistance in patients newly diagnosed with HIV-1 infection in Sweden 2003-2010
Karlsson, Annika, Björkman, Per, Bratt, Göran, Ekvall, Håkan, Gisslén, Magnus, Sönnerborg, Anders, Mild, Mattias, Albert, Jan
Published in PloS one (20.03.2012)
Published in PloS one (20.03.2012)
Get full text
Journal Article
Challenges with using primer IDs to improve accuracy of next generation sequencing
Brodin, Johanna, Hedskog, Charlotte, Heddini, Alexander, Benard, Emmanuel, Neher, Richard A, Mild, Mattias, Albert, Jan
Published in PloS one (05.03.2015)
Published in PloS one (05.03.2015)
Get full text
Journal Article
A Single Early Introduction of HIV-1 Subtype B into Central America Accounts for Most Current Cases
Murillo, Wendy, Veras, Nazle, Prosperi, Mattia, de Rivera, Ivette Lorenzana, Paz-Bailey, Gabriela, Morales-Miranda, Sonia, Juarez, Sandra I., Yang, Chunfu, DeVos, Joshua, Marín, José Pablo, Mild, Mattias, Albert, Jan, Salemi, Marco
Published in Journal of Virology (01.07.2013)
Published in Journal of Virology (01.07.2013)
Get full text
Journal Article
HIV-2 Genetic Evolution in Patients with Advanced Disease Is Faster than That in Matched HIV-1 Patients
Skar, Helena, Borrego, Pedro, Wallstrom, Timothy C, Mild, Mattias, Marcelino, José Maria, Barroso, Helena, Taveira, Nuno, Leitner, Thomas, Albert, Jan
Published in Journal of Virology (01.07.2010)
Published in Journal of Virology (01.07.2010)
Get full text
Journal Article
Molecular characterization of HCV in a Swedish county over 8 years (2002-2009) reveals distinct transmission patterns
Ederth, Josefine, Jern, Camilla, Norder, Helené, Magnius, Lars, Alm, Erik, Kleverman Rognsvåg, Björg, Sundin, Carl-Gustaf, Brytting, Mia, Esbjörnsson, Joakim, Mild, Mattias
Published in Infection ecology & epidemiology (2016)
Published in Infection ecology & epidemiology (2016)
Get full text
Journal Article
Survey on the Use of Whole-Genome Sequencing for Infectious Diseases Surveillance: Rapid Expansion of European National Capacities, 2015-2016
Revez, Joana, Espinosa, Laura, Albiger, Barbara, Leitmeyer, Katrin Claire, Struelens, Marc Jean
Published in Frontiers in public health (18.12.2017)
Published in Frontiers in public health (18.12.2017)
Get full text
Journal Article
Towards an understanding of the migration of Crimean-Congo hemorrhagic fever virus
Mild, Mattias, Simon, Melinda, Albert, Jan, Mirazimi, Ali
Published in Journal of general virology (01.01.2010)
Published in Journal of general virology (01.01.2010)
Get full text
Journal Article
HIV-1 transmission between MSM and heterosexuals, and increasing proportions of circulating recombinant forms in the Nordic Countries
Esbjörnsson, Joakim, Mild, Mattias, Audelin, Anne, Fonager, Jannik, Skar, Helena, Bruun Jørgensen, Louise, Liitsola, Kirsi, Björkman, Per, Bratt, Göran, Gisslén, Magnus, Sönnerborg, Anders, Nielsen, Claus, Medstrand, Patrik, Albert, Jan
Published in Virus evolution (01.01.2016)
Published in Virus evolution (01.01.2016)
Get full text
Journal Article
Phylogenetic analysis of the Latvian HIV-1 epidemic
Balode, Dace, Skar, Helena, Mild, Mattias, Kolupajeva, Tatjana, Ferdats, Andris, Rozentale, Baiba, Leitner, Thomas, Albert, Jan
Published in AIDS research and human retroviruses (01.08.2012)
Published in AIDS research and human retroviruses (01.08.2012)
Get more information
Journal Article
Differences in molecular evolution between switch (R5 to R5X4/X4-tropic) and non-switch (R5-tropic only) HIV-1 populations during infection
Mild, Mattias, Kvist, Anders, Esbjörnsson, Joakim, Karlsson, Ingrid, Fenyö, Eva Maria, Medstrand, Patrik
Published in Infection, genetics and evolution (01.04.2010)
Published in Infection, genetics and evolution (01.04.2010)
Get full text
Journal Article
Conference Proceeding
Longitudinal ultradeep characterization of HIV type 1 R5 and X4 subpopulations in patients followed from primary infection to coreceptor switch
Hedskog, Charlotte, Brodin, Johanna, Heddini, Alexander, Bratt, Göran, Albert, Jan, Mild, Mattias
Published in AIDS research and human retroviruses (01.09.2013)
Published in AIDS research and human retroviruses (01.09.2013)
Get more information
Journal Article
High intrapatient HIV-1 evolutionary rate is associated with CCR5-to-CXCR4 coreceptor switch
Mild, Mattias, Gray, Rebecca R., Kvist, Anders, Lemey, Philippe, Goodenow, Maureen M., Fenyö, Eva Maria, Albert, Jan, Salemi, Marco, Esbjörnsson, Joakim, Medstrand, Patrik
Published in Infection, genetics and evolution (01.10.2013)
Published in Infection, genetics and evolution (01.10.2013)
Get full text
Journal Article
Primary HIV-1 R5 isolates from end-stage disease display enhanced viral fitness in parallel with increased gp120 net charge
Repits, Johanna, Sterjovski, Jasminka, Badia-Martinez, Daniel, Mild, Mattias, Gray, Lachlan, Churchill, Melissa J, Purcell, Damian F.J, Karlsson, Anders, Albert, Jan, Fenyö, Eva Maria, Achour, Adnane, Gorry, Paul R, Jansson, Marianne
Published in Virology (New York, N.Y.) (15.09.2008)
Published in Virology (New York, N.Y.) (15.09.2008)
Get full text
Journal Article