The reactome pathway knowledgebase
Jassal, Bijay, Matthews, Lisa, Viteri, Guilherme, Gong, Chuqiao, Lorente, Pascual, Fabregat, Antonio, Sidiropoulos, Konstantinos, Cook, Justin, Gillespie, Marc, Haw, Robin, Loney, Fred, May, Bruce, Milacic, Marija, Rothfels, Karen, Sevilla, Cristoffer, Shamovsky, Veronica, Shorser, Solomon, Varusai, Thawfeek, Weiser, Joel, Wu, Guanming, Stein, Lincoln, Hermjakob, Henning, D’Eustachio, Peter
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
Get full text
Journal Article
The reactome pathway knowledgebase 2022
Gillespie, Marc, Jassal, Bijay, Stephan, Ralf, Milacic, Marija, Rothfels, Karen, Senff-Ribeiro, Andrea, Griss, Johannes, Sevilla, Cristoffer, Matthews, Lisa, Gong, Chuqiao, Deng, Chuan, Varusai, Thawfeek, Ragueneau, Eliot, Haider, Yusra, May, Bruce, Shamovsky, Veronica, Weiser, Joel, Brunson, Timothy, Sanati, Nasim, Beckman, Liam, Shao, Xiang, Fabregat, Antonio, Sidiropoulos, Konstantinos, Murillo, Julieth, Viteri, Guilherme, Cook, Justin, Shorser, Solomon, Bader, Gary, Demir, Emek, Sander, Chris, Haw, Robin, Wu, Guanming, Stein, Lincoln, Hermjakob, Henning, D’Eustachio, Peter
Published in Nucleic acids research (07.01.2022)
Published in Nucleic acids research (07.01.2022)
Get full text
Journal Article
Annotating cancer variants and anti-cancer therapeutics in reactome
Milacic, Marija, Haw, Robin, Rothfels, Karen, Wu, Guanming, Croft, David, Hermjakob, Henning, D'Eustachio, Peter, Stein, Lincoln
Published in Cancers (08.11.2012)
Published in Cancers (08.11.2012)
Get full text
Journal Article
Reactome enhanced pathway visualization
Sidiropoulos, Konstantinos, Viteri, Guilherme, Sevilla, Cristoffer, Jupe, Steve, Webber, Marissa, Orlic-Milacic, Marija, Jassal, Bijay, May, Bruce, Shamovsky, Veronica, Duenas, Corina, Rothfels, Karen, Matthews, Lisa, Song, Heeyeon, Stein, Lincoln, Haw, Robin, D'Eustachio, Peter, Ping, Peipei, Hermjakob, Henning, Fabregat, Antonio
Published in Bioinformatics (Oxford, England) (01.11.2017)
Published in Bioinformatics (Oxford, England) (01.11.2017)
Get full text
Journal Article
Mutations in MECP2 exon 1 in classical rett patients disrupt MECP2_e1 transcription, but not transcription of MECP2_e2
Gianakopoulos, Peter J., Zhang, Yuzhi, Pencea, Nela, Orlic-Milacic, Marija, Mittal, Kirti, Windpassinger, Christian, White, Sara-Jane, Kroisel, Peter M., Chow, Eva W.C., Saunders, Carol J., Minassian, Berge A., Vincent, John B.
Published in American journal of medical genetics. Part B, Neuropsychiatric genetics (01.03.2012)
Published in American journal of medical genetics. Part B, Neuropsychiatric genetics (01.03.2012)
Get full text
Journal Article
Guidelines for the functional annotation of microRNAs using the Gene Ontology
Huntley, Rachael P, Sitnikov, Dmitry, Orlic-Milacic, Marija, Balakrishnan, Rama, D'Eustachio, Peter, Gillespie, Marc E, Howe, Doug, Kalea, Anastasia Z, Maegdefessel, Lars, Osumi-Sutherland, David, Petri, Victoria, Smith, Jennifer R, Van Auken, Kimberly, Wood, Valerie, Zampetaki, Anna, Mayr, Manuel, Lovering, Ruth C
Published in RNA (Cambridge) (01.05.2016)
Published in RNA (Cambridge) (01.05.2016)
Get full text
Journal Article
Over-expression of either MECP2_e1 or MECP2_e2 in neuronally differentiated cells results in different patterns of gene expression
Orlic-Milacic, Marija, Kaufman, Liana, Mikhailov, Anna, Cheung, Aaron Y L, Mahmood, Huda, Ellis, James, Gianakopoulos, Peter J, Minassian, Berge A, Vincent, John B
Published in PloS one (03.04.2014)
Published in PloS one (03.04.2014)
Get full text
Journal Article
The Reactome Pathway Knowledgebase
Fabregat, Antonio, Jupe, Steven, Matthews, Lisa, Sidiropoulos, Konstantinos, Gillespie, Marc, Garapati, Phani, Haw, Robin, Jassal, Bijay, Korninger, Florian, May, Bruce, Milacic, Marija, Roca, Corina Duenas, Rothfels, Karen, Sevilla, Cristoffer, Shamovsky, Veronica, Shorser, Solomon, Varusai, Thawfeek, Viteri, Guilherme, Weiser, Joel, Wu, Guanming, Stein, Lincoln, Hermjakob, Henning, D'Eustachio, Peter
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
Get full text
Journal Article
The Reactome Pathway Knowledgebase 2024
Milacic, Marija, Beavers, Deidre, Conley, Patrick, Gong, Chuqiao, Gillespie, Marc, Griss, Johannes, Haw, Robin, Jassal, Bijay, Matthews, Lisa, May, Bruce, Petryszak, Robert, Ragueneau, Eliot, Rothfels, Karen, Sevilla, Cristoffer, Shamovsky, Veronica, Stephan, Ralf, Tiwari, Krishna, Varusai, Thawfeek, Weiser, Joel, Wright, Adam, Wu, Guanming, Stein, Lincoln, Hermjakob, Henning, D’Eustachio, Peter
Published in Nucleic acids research (05.01.2024)
Published in Nucleic acids research (05.01.2024)
Get full text
Journal Article
The Reactome pathway Knowledgebase
Fabregat, Antonio, Sidiropoulos, Konstantinos, Garapati, Phani, Gillespie, Marc, Hausmann, Kerstin, Haw, Robin, Jassal, Bijay, Jupe, Steven, Korninger, Florian, McKay, Sheldon, Matthews, Lisa, May, Bruce, Milacic, Marija, Rothfels, Karen, Shamovsky, Veronica, Webber, Marissa, Weiser, Joel, Williams, Mark, Wu, Guanming, Stein, Lincoln, Hermjakob, Henning, D'Eustachio, Peter
Published in Nucleic acids research (04.01.2016)
Published in Nucleic acids research (04.01.2016)
Get full text
Journal Article
The Reactome pathway knowledgebase
Croft, David, Mundo, Antonio Fabregat, Haw, Robin, Milacic, Marija, Weiser, Joel, Wu, Guanming, Caudy, Michael, Garapati, Phani, Gillespie, Marc, Kamdar, Maulik R, Jassal, Bijay, Jupe, Steven, Matthews, Lisa, May, Bruce, Palatnik, Stanislav, Rothfels, Karen, Shamovsky, Veronica, Song, Heeyeon, Williams, Mark, Birney, Ewan, Hermjakob, Henning, Stein, Lincoln, D'Eustachio, Peter
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
Get full text
Journal Article
Oncogenic ETS fusions promote DNA damage and proinflammatory responses via pericentromeric RNAs in extracellular vesicles
Ruzanov, Peter, Evdokimova, Valentina, Pachva, Manideep C, Minkovich, Alon, Zhang, Zhenbo, Langman, Sofya, Gassmann, Hendrik, Thiel, Uwe, Orlic-Milacic, Marija, Zaidi, Syed H, Peltekova, Vanya, Heisler, Lawrence E, Sharma, Manju, Cox, Michael E, McKee, Trevor D, Zaidi, Mark, Lapouble, Eve, McPherson, John D, Delattre, Olivier, Radvanyi, Laszlo, Burdach, Stefan Eg, Stein, Lincoln D, Sorensen, Poul H
Published in The Journal of clinical investigation (01.05.2024)
Published in The Journal of clinical investigation (01.05.2024)
Get full text
Journal Article
Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes
Orlic-Milacic, Marija, Rothfels, Karen, Matthews, Lisa, Wright, Adam, Jassal, Bijay, Shamovsky, Veronica, Trinh, Quang, Gillespie, Marc E, Sevilla, Cristoffer, Tiwari, Krishna, Ragueneau, Eliot, Gong, Chuqiao, Stephan, Ralf, May, Bruce, Haw, Robin, Weiser, Joel, Beavers, Deidre, Conley, Patrick, Hermjakob, Henning, Stein, Lincoln D, D'Eustachio, Peter, Wu, Guanming
Published in Database : the journal of biological databases and curation (07.05.2024)
Published in Database : the journal of biological databases and curation (07.05.2024)
Get full text
Journal Article
Evaluating the predictive accuracy of curated biological pathways in a public knowledgebase
Wright, Adam J, Orlic-Milacic, Marija, Rothfels, Karen, Weiser, Joel, Trinh, Quang M, Jassal, Bijay, Haw, Robin A, Stein, Lincoln D
Published in Database : the journal of biological databases and curation (28.03.2022)
Published in Database : the journal of biological databases and curation (28.03.2022)
Get full text
Journal Article
Using the Reactome Database
Rothfels, Karen, Milacic, Marija, Matthews, Lisa, Haw, Robin, Sevilla, Cristoffer, Gillespie, Marc, Stephan, Ralf, Gong, Chuqiao, Ragueneau, Eliot, May, Bruce, Shamovsky, Veronica, Wright, Adam, Weiser, Joel, Beavers, Deidre, Conley, Patrick, Tiwari, Krishna, Jassal, Bijay, Griss, Johannes, Senff‐Ribeiro, Andrea, Brunson, Timothy, Petryszak, Robert, Hermjakob, Henning, D'Eustachio, Peter, Wu, Guanming, Stein, Lincoln
Published in Current protocols (01.04.2023)
Published in Current protocols (01.04.2023)
Get full text
Journal Article
Reactome and ORCID-fine-grained credit attribution for community curation
Viteri, Guilherme, Matthews, Lisa, Varusai, Thawfeek, Gillespie, Marc, Milacic, Marija, Cook, Justin, Weiser, Joel, Shorser, Solomon, Sidiropoulos, Konstantinos, Fabregat, Antonio, Haw, Robin, Wu, Guanming, Stein, Lincoln, D'Eustachio, Peter, Hermjakob, Henning
Published in Database : the journal of biological databases and curation (01.01.2019)
Published in Database : the journal of biological databases and curation (01.01.2019)
Get full text
Journal Article
Targeted sequencing in a phase III trial of luminal breast cancer: Identification of novel targets
Bartlett, John, Kalatskaya, Irina, Yousif, Fouad, Bayani, Jane, Trinh, Quang M, Heisler, Lawrence, Timms, Lee, Lee, Shawna, Buchner, Nicholas, Milacic, Marija, Rothfels, Karen, Crozier, Cheryl, Drake, Camilla, Hasenburg, Annette, Kieback, Dirk G, Rea, Daniel, McPherson, John, Boutros, Paul Christopher, Stein, Lincoln D
Published in Journal of clinical oncology (20.05.2017)
Published in Journal of clinical oncology (20.05.2017)
Get full text
Journal Article
RNAcentral: a hub of information for non-coding RNA sequences
Sweeney, Blake A., Petrov, Anton I., Burkov, Boris, Finn, Robert D., Bateman, Alex, Szymanski, Maciej, Karlowski, Wojciech M., Gorodkin, Jan, Seemann, Stefan E., Cannone, Jamie J., Gutell, Robin R., Fey, Petra, Basu, Siddhartha, Kay, Simon, Cochrane, Guy, Billis, Kostantinos, Emmert, David, Marygold, Steven J., Huntley, Rachael P., Lovering, Ruth C., Frankish, Adam, Chan, Patricia P., Lowe, Todd M., Bruford, Elspeth, Seal, Ruth, Vandesompele, Jo, Volders, Pieter-Jan, Paraskevopoulou, Maria, Ma, Lina, Zhang, Zhang, Griffiths-Jones, Sam, Bujnicki, Janusz M., Boccaletto, Pietro, Blake, Judith A., Bult, Carol J., Chen, Runsheng, Zhao, Yi, Wood, Valerie, Rutherford, Kim, Rivas, Elena, Cole, James, Laulederkind, Stanley J. F., Shimoyama, Mary, Gillespie, Marc E., Orlic-Milacic, Marija, Kalvari, Ioanna, Nawrocki, Eric, Engel, Stacia R., Cherry, J. Michael, Team, SILVA, Berardini, Tanya Z., Hatzigeorgiou, Artemis, Karagkouni, Dimitra, Howe, Kevin, Davis, Paul, Dinger, Marcel, He, Shunmin, Yoshihama, Maki, Kenmochi, Naoya, Stadler, Peter F., Williams, Kelly P.
Published in Nucleic acids research (08.12.2018)
Get full text
Published in Nucleic acids research (08.12.2018)
Journal Article
The TAg-RB murine retinoblastoma cell of origin has immunohistochemical features of differentiated Muller glia with progenitor properties
Pajovic, Sanja, Corson, Timothy W, Spencer, Clarellen, Dimaras, Helen, Orlic-Milacic, Marija, Marchong, Mellone N, To, Kwong-Him, Thériault, Brigitte, Auspitz, Mark, Gallie, Brenda L
Published in Investigative ophthalmology & visual science (01.09.2011)
Published in Investigative ophthalmology & visual science (01.09.2011)
Get full text
Journal Article
Overview of the interactive task in BioCreative V
Wang, Qinghua, S Abdul, Shabbir, Almeida, Lara, Ananiadou, Sophia, Balderas-Martínez, Yalbi I, Batista-Navarro, Riza, Campos, David, Chilton, Lucy, Chou, Hui-Jou, Contreras, Gabriela, Cooper, Laurel, Dai, Hong-Jie, Ferrell, Barbra, Fluck, Juliane, Gama-Castro, Socorro, George, Nancy, Gkoutos, Georgios, Irin, Afroza K, Jensen, Lars J, Jimenez, Silvia, Jue, Toni R, Keseler, Ingrid, Madan, Sumit, Matos, Sérgio, McQuilton, Peter, Milacic, Marija, Mort, Matthew, Natarajan, Jeyakumar, Pafilis, Evangelos, Pereira, Emiliano, Rao, Shruti, Rinaldi, Fabio, Rothfels, Karen, Salgado, David, Silva, Raquel M, Singh, Onkar, Stefancsik, Raymund, Su, Chu-Hsien, Subramani, Suresh, Tadepally, Hamsa D, Tsaprouni, Loukia, Vasilevsky, Nicole, Wang, Xiaodong, Chatr-Aryamontri, Andrew, Laulederkind, Stanley J F, Matis-Mitchell, Sherri, McEntyre, Johanna, Orchard, Sandra, Pundir, Sangya, Rodriguez-Esteban, Raul, Van Auken, Kimberly, Lu, Zhiyong, Schaeffer, Mary, Wu, Cathy H, Hirschman, Lynette, Arighi, Cecilia N
Published in Database : the journal of biological databases and curation (01.09.2016)
Published in Database : the journal of biological databases and curation (01.09.2016)
Get full text
Journal Article