Clustered Mutations in Yeast and in Human Cancers Can Arise from Damaged Long Single-Strand DNA Regions
Roberts, Steven A., Sterling, Joan, Thompson, Cole, Harris, Shawn, Mav, Deepak, Shah, Ruchir, Klimczak, Leszek J., Kryukov, Gregory V., Malc, Ewa, Mieczkowski, Piotr A., Resnick, Michael A., Gordenin, Dmitry A.
Published in Molecular cell (25.05.2012)
Published in Molecular cell (25.05.2012)
Get full text
Journal Article
Acetaldehyde makes a distinct mutation signature in single-stranded DNA
Vijayraghavan, Sriram, Porcher, Latarsha, Mieczkowski, Piotr A, Saini, Natalie
Published in Nucleic acids research (22.07.2022)
Published in Nucleic acids research (22.07.2022)
Get full text
Journal Article
Practical innovations for high-throughput amplicon sequencing
Lundberg, Derek S, Yourstone, Scott, Mieczkowski, Piotr, Jones, Corbin D, Dangl, Jeffery L
Published in Nature methods (01.10.2013)
Published in Nature methods (01.10.2013)
Get full text
Journal Article
An APOBEC3A hypermutation signature is distinguishable from the signature of background mutagenesis by APOBEC3B in human cancers
Chan, Kin, Roberts, Steven A, Klimczak, Leszek J, Sterling, Joan F, Saini, Natalie, Malc, Ewa P, Kim, Jaegil, Kwiatkowski, David J, Fargo, David C, Mieczkowski, Piotr A, Getz, Gad, Gordenin, Dmitry A
Published in Nature genetics (01.09.2015)
Published in Nature genetics (01.09.2015)
Get full text
Journal Article
Root microbiota drive direct integration of phosphate stress and immunity
Castrillo, Gabriel, Teixeira, Paulo José Pereira Lima, Paredes, Sur Herrera, Law, Theresa F., de Lorenzo, Laura, Feltcher, Meghan E., Finkel, Omri M., Breakfield, Natalie W., Mieczkowski, Piotr, Jones, Corbin D., Paz-Ares, Javier, Dangl, Jeffery L.
Published in Nature (London) (23.03.2017)
Published in Nature (London) (23.03.2017)
Get full text
Journal Article
Long transposon-rich centromeres in an oomycete reveal divergence of centromere features in Stramenopila-Alveolata-Rhizaria lineages
Fang, Yufeng, Coelho, Marco A, Shu, Haidong, Schotanus, Klaas, Thimmappa, Bhagya C, Yadav, Vikas, Chen, Han, Malc, Ewa P, Wang, Jeremy, Mieczkowski, Piotr A, Kronmiller, Brent, Tyler, Brett M, Sanyal, Kaustuv, Dong, Suomeng, Nowrousian, Minou, Heitman, Joseph
Published in PLoS genetics (09.03.2020)
Published in PLoS genetics (09.03.2020)
Get full text
Journal Article
Repair of multiple simultaneous double-strand breaks causes bursts of genome-wide clustered hypermutation
Sakofsky, Cynthia J, Saini, Natalie, Klimczak, Leszek J, Chan, Kin, Malc, Ewa P, Mieczkowski, Piotr A, Burkholder, Adam B, Fargo, David, Gordenin, Dmitry A
Published in PLoS biology (30.09.2019)
Published in PLoS biology (30.09.2019)
Get full text
Journal Article
Intercellular Communication between Airway Epithelial Cells Is Mediated by Exosome-Like Vesicles
Gupta, Richa, Radicioni, Giorgia, Abdelwahab, Sabri, Dang, Hong, Carpenter, Jerome, Chua, Michael, Mieczkowski, Piotr A, Sheridan, John T, Randell, Scott H, Kesimer, Mehmet
Published in American journal of respiratory cell and molecular biology (01.02.2019)
Published in American journal of respiratory cell and molecular biology (01.02.2019)
Get full text
Journal Article
Genome-wide contributions of the MutSα- and MutSβ-dependent DNA mismatch repair pathways to the maintenance of genetic stability in Saccharomyces cerevisiae
Kadyrova, Lyudmila Y., Mieczkowski, Piotr A., Kadyrov, Farid A.
Published in The Journal of biological chemistry (01.05.2023)
Published in The Journal of biological chemistry (01.05.2023)
Get full text
Journal Article
The Impact of Environmental and Endogenous Damage on Somatic Mutation Load in Human Skin Fibroblasts
Saini, Natalie, Roberts, Steven A, Klimczak, Leszek J, Chan, Kin, Grimm, Sara A, Dai, Shuangshuang, Fargo, David C, Boyer, Jayne C, Kaufmann, William K, Taylor, Jack A, Lee, Eunjung, Cortes-Ciriano, Isidro, Park, Peter J, Schurman, Shepherd H, Malc, Ewa P, Mieczkowski, Piotr A, Gordenin, Dmitry A
Published in PLoS genetics (27.10.2016)
Published in PLoS genetics (27.10.2016)
Get full text
Journal Article
Cryptococcus gattii VGIII isolates causing infections in HIV/AIDS patients in Southern California: identification of the local environmental source as arboreal
Springer, Deborah J, Billmyre, R Blake, Filler, Elan E, Voelz, Kerstin, Pursall, Rhiannon, Mieczkowski, Piotr A, Larsen, Robert A, Dietrich, Fred S, May, Robin C, Filler, Scott G, Heitman, Joseph
Published in PLoS pathogens (01.08.2014)
Published in PLoS pathogens (01.08.2014)
Get full text
Journal Article
Repair of base damage within break-induced replication intermediates promotes kataegis associated with chromosome rearrangements
Elango, Rajula, Osia, Beth, Harcy, Victoria, Malc, Ewa, Mieczkowski, Piotr A, Roberts, Steven A, Malkova, Anna
Published in Nucleic acids research (10.10.2019)
Published in Nucleic acids research (10.10.2019)
Get full text
Journal Article
Genetic heterogeneity of diffuse large B-cell lymphoma
Zhang, Jenny, Grubor, Vladimir, Love, Cassandra L., Banerjee, Anjishnu, Richards, Kristy L., Mieczkowski, Piotr A., Dunphy, Cherie, Choi, William, Au, Wing Yan, Srivastava, Gopesh, Lugar, Patricia L, Rizzieri, David A., Lagoo, Anand S., Bernal-Mizrachi, Leon, Mann, Karen P., Flowers, Christopher, Naresh, Kikkeri, Evens, Andrew, Gordon, Leo I., Czader, Magdalena, Gill, Javed I., Hsi, Eric D., Liu, Qingquan, Fan, Alice, Walsh, Katherine, Jima, Dereje, Smith, Lisa L., Johnson, Amy J., Byrd, John C., Luftig, Micah A., Ni, Ting, Zhu, Jun, Chadburn, Amy, Levy, Shawn, Dunson, David, Dave, Sandeep S.
Published in Proceedings of the National Academy of Sciences - PNAS (22.01.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (22.01.2013)
Get full text
Journal Article
Tracking replication enzymology in vivo by genome-wide mapping of ribonucleotide incorporation
Clausen, Anders R, Lujan, Scott A, Burkholder, Adam B, Orebaugh, Clinton D, Williams, Jessica S, Clausen, Maryam F, Malc, Ewa P, Mieczkowski, Piotr A, Fargo, David C, Smith, Duncan J, Kunkel, Thomas A
Published in Nature structural & molecular biology (01.03.2015)
Published in Nature structural & molecular biology (01.03.2015)
Get full text
Journal Article
Genome-wide maps of alkylation damage, repair, and mutagenesis in yeast reveal mechanisms of mutational heterogeneity
Mao, Peng, Brown, Alexander J, Malc, Ewa P, Mieczkowski, Piotr A, Smerdon, Michael J, Roberts, Steven A, Wyrick, John J
Published in Genome research (01.10.2017)
Published in Genome research (01.10.2017)
Get full text
Journal Article