Single-cell RNA sequencing reveals functional heterogeneity of glioma-associated brain macrophages
Ochocka, Natalia, Segit, Pawel, Walentynowicz, Kacper Adam, Wojnicki, Kamil, Cyranowski, Salwador, Swatler, Julian, Mieczkowski, Jakub, Kaminska, Bozena
Published in Nature communications (19.02.2021)
Published in Nature communications (19.02.2021)
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EGFR/FOXO3a/BIM signaling pathway determines chemosensitivity of BMP4-differentiated glioma stem cells to temozolomide
Ciechomska, Iwona Anna, Gielniewski, Bartlomiej, Wojtas, Bartosz, Kaminska, Bozena, Mieczkowski, Jakub
Published in Experimental & molecular medicine (01.08.2020)
Published in Experimental & molecular medicine (01.08.2020)
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Journal Article
Widespread changes in nucleosome accessibility without changes in nucleosome occupancy during a rapid transcriptional induction
Mueller, Britta, Mieczkowski, Jakub, Kundu, Sharmistha, Wang, Peggy, Sadreyev, Ruslan, Tolstorukov, Michael Y, Kingston, Robert E
Published in Genes & development (01.03.2017)
Published in Genes & development (01.03.2017)
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Journal Article
SMARCB1-mediated SWI/SNF complex function is essential for enhancer regulation
Wang, Xiaofeng, Lee, Ryan S, Alver, Burak H, Haswell, Jeffrey R, Wang, Su, Mieczkowski, Jakub, Drier, Yotam, Gillespie, Shawn M, Archer, Tenley C, Wu, Jennifer N, Tzvetkov, Evgeni P, Troisi, Emma C, Pomeroy, Scott L, Biegel, Jaclyn A, Tolstorukov, Michael Y, Bernstein, Bradley E, Park, Peter J, Roberts, Charles W M
Published in Nature genetics (01.02.2017)
Published in Nature genetics (01.02.2017)
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Journal Article
MNase titration reveals differences between nucleosome occupancy and chromatin accessibility
Mieczkowski, Jakub, Cook, April, Bowman, Sarah K., Mueller, Britta, Alver, Burak H., Kundu, Sharmistha, Deaton, Aimee M., Urban, Jennifer A., Larschan, Erica, Park, Peter J., Kingston, Robert E., Tolstorukov, Michael Y.
Published in Nature communications (06.05.2016)
Published in Nature communications (06.05.2016)
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Journal Article
Immune microenvironment of experimental rat C6 gliomas resembles human glioblastomas
Gieryng, Anna, Pszczolkowska, Dominika, Bocian, Katarzyna, Dabrowski, Michal, Rajan, Wenson David, Kloss, Michal, Mieczkowski, Jakub, Kaminska, Bozena
Published in Scientific reports (14.12.2017)
Published in Scientific reports (14.12.2017)
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Journal Article
Enhancer regions show high histone H3.3 turnover that changes during differentiation
Deaton, Aimee M, Gómez-Rodríguez, Mariluz, Mieczkowski, Jakub, Tolstorukov, Michael Y, Kundu, Sharmistha, Sadreyev, Ruslan I, Jansen, Lars Et, Kingston, Robert E
Published in eLife (15.06.2016)
Published in eLife (15.06.2016)
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Journal Article
Environmental stimuli shape microglial plasticity in glioma
Garofalo, Stefano, Porzia, Alessandra, Mainiero, Fabrizio, Di Angelantonio, Silvia, Cortese, Barbara, Basilico, Bernadette, Pagani, Francesca, Cignitti, Giorgio, Chece, Giuseppina, Maggio, Roberta, Tremblay, Marie-Eve, Savage, Julie, Bisht, Kanchan, Esposito, Vincenzo, Bernardini, Giovanni, Seyfried, Thomas, Mieczkowski, Jakub, Stepniak, Karolina, Kaminska, Bozena, Santoni, Angela, Limatola, Cristina
Published in eLife (29.12.2017)
Published in eLife (29.12.2017)
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Journal Article
Mapping chromatin accessibility and active regulatory elements reveals pathological mechanisms in human gliomas
Stępniak, Karolina, Machnicka, Magdalena A., Mieczkowski, Jakub, Macioszek, Anna, Wojtaś, Bartosz, Gielniewski, Bartłomiej, Poleszak, Katarzyna, Perycz, Malgorzata, Król, Sylwia K., Guzik, Rafał, Dąbrowski, Michał J., Dramiński, Michał, Jardanowska, Marta, Grabowicz, Ilona, Dziedzic, Agata, Kranas, Hanna, Sienkiewicz, Karolina, Diamanti, Klev, Kotulska, Katarzyna, Grajkowska, Wiesława, Roszkowski, Marcin, Czernicki, Tomasz, Marchel, Andrzej, Komorowski, Jan, Kaminska, Bozena, Wilczyński, Bartek
Published in Nature communications (15.06.2021)
Published in Nature communications (15.06.2021)
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Journal Article
Hypoxia‐mediated regulation of DDX5 through decreased chromatin accessibility and post‐translational targeting restricts R‐loop accumulation
Leszczynska, Katarzyna B., Dzwigonska, Monika, Estephan, Hala, Moehlenbrink, Jutta, Bowler, Elizabeth, Giaccia, Amato J., Mieczkowski, Jakub, Kaminska, Bozena, Hammond, Ester M.
Published in Molecular oncology (01.07.2023)
Published in Molecular oncology (01.07.2023)
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Journal Article
Injury-induced perivascular niche supports alternative differentiation of adult rodent CNS progenitor cells
Ulanska-Poutanen, Justyna, Mieczkowski, Jakub, Zhao, Chao, Konarzewska, Katarzyna, Kaza, Beata, Pohl, Hartmut Bf, Bugajski, Lukasz, Kaminska, Bozena, Franklin, Robin Jm, Zawadzka, Malgorzata
Published in eLife (17.09.2018)
Published in eLife (17.09.2018)
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Journal Article
DMRTA2 supports glioma stem-cell mediated neovascularization in glioblastoma
Maleszewska, Marta, Wojnicki, Kamil, Mieczkowski, Jakub, Król, Sylwia K., Jacek, Karol, Śmiech, Magdalena, Kocyk, Marta, Ciechomska, Iwona A., Bujko, Mateusz, Siedlecki, Janusz, Kotulska, Katarzyna, Grajkowska, Wiesława, Zawadzka, Małgorzata, Kaminska, Bozena
Published in Cell death & disease (20.03.2024)
Published in Cell death & disease (20.03.2024)
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Journal Article
Integration of single-cell RNA sequencing and spatial transcriptomics to reveal the glioblastoma heterogeneity [version 1; peer review: 1 approved, 1 approved with reservations]
Perdyan, Adrian, Lawrynowicz, Urszula, Horbacz, Monika, Kaminska, Bozena, Mieczkowski, Jakub
Published in F1000 research (2022)
Published in F1000 research (2022)
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Journal Article
H2A.Z histone variants facilitate HDACi-dependent removal of H3.3K27M mutant protein in pediatric high-grade glioma cells
Leszczynska, Katarzyna B., Freitas-Huhtamäki, Amanda, Jayaprakash, Chinchu, Dzwigonska, Monika, Vitorino, Francisca N.L., Horth, Cynthia, Wojnicki, Kamil, Gielniewski, Bartlomiej, Szadkowska, Paulina, Kaza, Beata, Nazarian, Javad, Ciolkowski, Maciej K., Trubicka, Joanna, Grajkowska, Wieslawa, Garcia, Benjamin A., Majewski, Jacek, Kaminska, Bozena, Mieczkowski, Jakub
Published in Cell reports (Cambridge) (27.02.2024)
Published in Cell reports (Cambridge) (27.02.2024)
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Journal Article
Loss of Y in regulatory T lymphocytes in the tumor micro-environment of primary colorectal cancers and liver metastases
Wójcik, Magdalena, Juhas, Ulana, Mohammadi, Elyas, Mattisson, Jonas, Drężek-Chyła, Kinga, Rychlicka-Buniowska, Edyta, Bruhn-Olszewska, Bożena, Davies, Hanna, Chojnowska, Katarzyna, Olszewski, Paweł, Bieńkowski, Michał, Jankowski, Michał, Rostkowska, Olga, Hellmann, Andrzej, Pęksa, Rafał, Kowalski, Jacek, Zdrenka, Marek, Kobiela, Jarek, Zegarski, Wojciech, Biernat, Wojciech, Szylberg, Łukasz, Remiszewski, Piotr, Mieczkowski, Jakub, Filipowicz, Natalia, Dumanski, Jan P.
Published in Scientific reports (24.04.2024)
Published in Scientific reports (24.04.2024)
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Journal Article
Integration of single-cell RNA sequencing and spatial transcriptomics to reveal the glioblastoma heterogeneity [version 2; peer review: 3 approved]
Perdyan, Adrian, Lawrynowicz, Urszula, Horbacz, Monika, Kaminska, Bozena, Mieczkowski, Jakub
Published in F1000 research (01.01.2022)
Published in F1000 research (01.01.2022)
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Journal Article
Size matters: the impact of nucleus size on results from spatial transcriptomics
Mohammadi, Elyas, Chojnowska, Katarzyna, Bieńkowski, Michał, Kostecka, Anna, Koczkowska, Magdalena, Żmijewski, Michał A, Jąkalski, Marcin, Ingelsson, Martin, Filipowicz, Natalia, Olszewski, Paweł, Davies, Hanna, Wierzbicka, Justyna M, Hyman, Bradley T, Dumanski, Jan P, Piotrowski, Arkadiusz, Mieczkowski, Jakub
Published in Journal of translational medicine (21.04.2023)
Published in Journal of translational medicine (21.04.2023)
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