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Analysis of Microbiome Data in the Presence of Excess Zeros
Kaul, Abhishek, Mandal, Siddhartha, Davidov, Ori, Peddada, Shyamal D.
Published in Frontiers in microbiology (07.11.2017)
Published in Frontiers in microbiology (07.11.2017)
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Revolutionizing colorectal cancer detection: A breakthrough in microbiome data analysis
Mulenga, Mwenge, Rajamanikam, Arutchelvan, Kumar, Suresh, Muhammad, Saharuddin bin, Bhassu, Subha, Samudid, Chandramathi, Sabri, Aznul Qalid Md, Seera, Manjeevan, Eke, Christopher Ifeanyi
Published in PloS one (29.01.2025)
Published in PloS one (29.01.2025)
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A semiparametric model for between‐subject attributes: Applications to beta‐diversity of microbiome data
Liu, J., Zhang, Xinlian, Chen, T., Wu, T., Lin, T., Jiang, L., Lang, S., Liu, L., Natarajan, L., Tu, J.X., Kosciolek, T., Morton, J., Nguyen, T.T., Schnabl, B., Knight, R., Feng, C., Zhong, Y., Tu, X.M.
Published in Biometrics (01.09.2022)
Published in Biometrics (01.09.2022)
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q2-longitudinal: Longitudinal and Paired-Sample Analyses of Microbiome Data
Bokulich, Nicholas A., Dillon, Matthew R., Zhang, Yilong, Rideout, Jai Ram, Bolyen, Evan, Li, Huilin, Albert, Paul S., Caporaso, J. Gregory
Published in mSystems (01.11.2018)
Published in mSystems (01.11.2018)
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Microbiome 101: Studying, Analyzing, and Interpreting Gut Microbiome Data for Clinicians
Allaband, Celeste, McDonald, Daniel, Vázquez-Baeza, Yoshiki, Minich, Jeremiah J., Tripathi, Anupriya, Brenner, David A., Loomba, Rohit, Smarr, Larry, Sandborn, William J., Schnabl, Bernd, Dorrestein, Pieter, Zarrinpar, Amir, Knight, Rob
Published in Clinical gastroenterology and hepatology (01.01.2019)
Published in Clinical gastroenterology and hepatology (01.01.2019)
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Investigating differential abundance methods in microbiome data: A benchmark study
Cappellato, Marco, Baruzzo, Giacomo, Di Camillo, Barbara
Published in PLoS computational biology (01.09.2022)
Published in PLoS computational biology (01.09.2022)
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Nephele: a cloud platform for simplified, standardized and reproducible microbiome data analysis
Weber, Nick, Liou, David, Dommer, Jennifer, MacMenamin, Philip, Quiñones, Mariam, Misner, Ian, Oler, Andrew J, Wan, Joe, Kim, Lewis, Coakley McCarthy, Meghan, Ezeji, Samuel, Noble, Karlynn, Hurt, Darrell E
Published in Bioinformatics (15.04.2018)
Published in Bioinformatics (15.04.2018)
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Explicet: graphical user interface software for metadata-driven management, analysis and visualization of microbiome data
Robertson, Charles E., Harris, J. Kirk, Wagner, Brandie D., Granger, David, Browne, Kathy, Tatem, Beth, Feazel, Leah M., Park, Kristin, Pace, Norman R., Frank, Daniel N.
Published in Bioinformatics (01.12.2013)
Published in Bioinformatics (01.12.2013)
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TARO: tree-aggregated factor regression for microbiome data integration
Mishra, Aditya K, Mahmud, Iqbal, Lorenzi, Philip L, Jenq, Robert R, Wargo, Jennifer A, Ajami, Nadim J, Peterson, Christine B
Published in Bioinformatics (Oxford, England) (03.06.2024)
Published in Bioinformatics (Oxford, England) (03.06.2024)
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Hypothesis Testing and Power Calculations for Taxonomic-Based Human Microbiome Data
La Rosa, Patricio S., Brooks, J. Paul, Deych, Elena, Boone, Edward L., Edwards, David J., Wang, Qin, Sodergren, Erica, Weinstock, George, Shannon, William D.
Published in PloS one (20.12.2012)
Published in PloS one (20.12.2012)
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MiCloud: A unified web platform for comprehensive microbiome data analysis
Gu, Won, Moon, Jeongsup, Chisina, Crispen, Kang, Byungkon, Park, Taesung, Koh, Hyunwook
Published in PloS one (01.08.2022)
Published in PloS one (01.08.2022)
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Compositional zero-inflated network estimation for microbiome data
Ha, Min Jin, Kim, Junghi, Galloway-Peña, Jessica, Do, Kim-Anh, Peterson, Christine B.
Published in BMC bioinformatics (28.12.2020)
Published in BMC bioinformatics (28.12.2020)
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Richness estimation in microbiome data obtained from denoising pipelines
Kleine Bardenhorst, Sven, Vital, Marius, Karch, André, Rübsamen, Nicole
Published in Computational and structural biotechnology journal (01.01.2022)
Published in Computational and structural biotechnology journal (01.01.2022)
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Explainable artificial intelligence for microbiome data analysis in colorectal cancer biomarker identification
Novielli, Pierfrancesco, Romano, Donato, Magarelli, Michele, Bitonto, Pierpaolo Di, Diacono, Domenico, Chiatante, Annalisa, Lopalco, Giuseppe, Sabella, Daniele, Venerito, Vincenzo, Filannino, Pasquale, Bellotti, Roberto, De Angelis, Maria, Iannone, Florenzo, Tangaro, Sabina
Published in Frontiers in microbiology (15.02.2024)
Published in Frontiers in microbiology (15.02.2024)
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