Microbiome definition re-visited: old concepts and new challenges
Berg, Gabriele, Rybakova, Daria, Fischer, Doreen, Cernava, Tomislav, Vergès, Marie-Christine Champomier, Charles, Trevor, Chen, Xiaoyulong, Cocolin, Luca, Eversole, Kellye, Corral, Gema Herrero, Kazou, Maria, Kinkel, Linda, Lange, Lene, Lima, Nelson, Loy, Alexander, Macklin, James A, Maguin, Emmanuelle, Mauchline, Tim, McClure, Ryan, Mitter, Birgit, Ryan, Matthew, Sarand, Inga, Smidt, Hauke, Schelkle, Bettina, Roume, Hugo, Kiran, G Seghal, Selvin, Joseph, Souza, Rafael Soares Correa de, van Overbeek, Leo, Singh, Brajesh K, Wagner, Michael, Walsh, Aaron, Sessitsch, Angela, Schloter, Michael
Published in Microbiome (30.06.2020)
Published in Microbiome (30.06.2020)
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VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses
Guo, Jiarong, Bolduc, Ben, Zayed, Ahmed A, Varsani, Arvind, Dominguez-Huerta, Guillermo, Delmont, Tom O, Pratama, Akbar Adjie, Gazitúa, M Consuelo, Vik, Dean, Sullivan, Matthew B, Roux, Simon
Published in Microbiome (01.02.2021)
Published in Microbiome (01.02.2021)
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Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin
Bokulich, Nicholas A, Kaehler, Benjamin D, Rideout, Jai Ram, Dillon, Matthew, Bolyen, Evan, Knight, Rob, Huttley, Gavin A, Gregory Caporaso, J
Published in Microbiome (17.05.2018)
Published in Microbiome (17.05.2018)
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Gut microbiota from green tea polyphenol-dosed mice improves intestinal epithelial homeostasis and ameliorates experimental colitis
Wu, Zhenhua, Huang, Shimeng, Li, Tiantian, Li, Na, Han, Dandan, Zhang, Bing, Xu, Zhenjiang Zech, Zhang, Shiyi, Pang, Jiaman, Wang, Shilan, Zhang, Guolong, Zhao, Jiangchao, Wang, Junjun
Published in Microbiome (07.09.2021)
Published in Microbiome (07.09.2021)
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Specialized metabolic functions of keystone taxa sustain soil microbiome stability
Xun, Weibing, Liu, Yunpeng, Li, Wei, Ren, Yi, Xiong, Wu, Xu, Zhihui, Zhang, Nan, Miao, Youzhi, Shen, Qirong, Zhang, Ruifu
Published in Microbiome (31.01.2021)
Published in Microbiome (31.01.2021)
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Stochastic processes shape microeukaryotic community assembly in a subtropical river across wet and dry seasons
Chen, Weidong, Ren, Kexin, Isabwe, Alain, Chen, Huihuang, Liu, Min, Yang, Jun
Published in Microbiome (22.10.2019)
Published in Microbiome (22.10.2019)
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Low shifts in salinity determined assembly processes and network stability of microeukaryotic plankton communities in a subtropical urban reservoir
Mo, Yuanyuan, Peng, Feng, Gao, Xiaofei, Xiao, Peng, Logares, Ramiro, Jeppesen, Erik, Ren, Kexin, Xue, Yuanyuan, Yang, Jun
Published in Microbiome (03.06.2021)
Published in Microbiome (03.06.2021)
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Sequence and cultivation study of Muribaculaceae reveals novel species, host preference, and functional potential of this yet undescribed family
Lagkouvardos, Ilias, Lesker, Till R, Hitch, Thomas C A, Gálvez, Eric J C, Smit, Nathiana, Neuhaus, Klaus, Wang, Jun, Baines, John F, Abt, Birte, Stecher, Bärbel, Overmann, Jörg, Strowig, Till, Clavel, Thomas
Published in Microbiome (19.02.2019)
Published in Microbiome (19.02.2019)
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Normalization and microbial differential abundance strategies depend upon data characteristics
Weiss, Sophie, Xu, Zhenjiang Zech, Peddada, Shyamal, Amir, Amnon, Bittinger, Kyle, Gonzalez, Antonio, Lozupone, Catherine, Zaneveld, Jesse R, Vázquez-Baeza, Yoshiki, Birmingham, Amanda, Hyde, Embriette R, Knight, Rob
Published in Microbiome (03.03.2017)
Published in Microbiome (03.03.2017)
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Fecal microbiota transplantation protects rotenone-induced Parkinson's disease mice via suppressing inflammation mediated by the lipopolysaccharide-TLR4 signaling pathway through the microbiota-gut-brain axis
Zhao, Zhe, Ning, Jingwen, Bao, Xiu-Qi, Shang, Meiyu, Ma, Jingwei, Li, Gen, Zhang, Dan
Published in Microbiome (17.11.2021)
Published in Microbiome (17.11.2021)
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Gut microbiota dysbiosis contributes to the development of hypertension
Li, Jing, Zhao, Fangqing, Wang, Yidan, Chen, Junru, Tao, Jie, Tian, Gang, Wu, Shouling, Liu, Wenbin, Cui, Qinghua, Geng, Bin, Zhang, Weili, Weldon, Ryan, Auguste, Kelda, Yang, Lei, Liu, Xiaoyan, Chen, Li, Yang, Xinchun, Zhu, Baoli, Cai, Jun
Published in Microbiome (01.02.2017)
Published in Microbiome (01.02.2017)
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METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks
Zhou, Zhichao, Tran, Patricia Q, Breister, Adam M, Liu, Yang, Kieft, Kristopher, Cowley, Elise S, Karaoz, Ulas, Anantharaman, Karthik
Published in Microbiome (16.02.2022)
Published in Microbiome (16.02.2022)
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Root-associated microbiomes of wheat under the combined effect of plant development and nitrogen fertilization
Chen, Shuaimin, Waghmode, Tatoba R, Sun, Ruibo, Kuramae, Eiko E, Hu, Chunsheng, Liu, Binbin
Published in Microbiome (22.10.2019)
Published in Microbiome (22.10.2019)
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Disease-induced changes in plant microbiome assembly and functional adaptation
Gao, Min, Xiong, Chao, Gao, Cheng, Tsui, Clement K. M., Wang, Meng-Meng, Zhou, Xin, Zhang, Ai-Min, Cai, Lei
Published in Microbiome (15.09.2021)
Published in Microbiome (15.09.2021)
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