Viral Lineages in the 2022 RSV Surge in the United States
Adams, Gordon, Moreno, Gage K., Petros, Brittany A., Uddin, Rockib, Levine, Zoe, Kotzen, Ben, Messer, Katelyn S., Dobbins, Sabrina T., DeRuff, Katherine C., Loreth, Christine M., Brock-Fisher, Taylor, Schaffner, Stephen F., Chaluvadi, Sushma, Kanjilal, Sanjat, Luban, Jeremy, Ozonoff, Al, Park, Daniel J., Turbett, Sarah E., Siddle, Katherine J., MacInnis, Bronwyn L., Sabeti, Pardis C., Lemieux, Jacob E.
Published in The New England journal of medicine (06.04.2023)
Published in The New England journal of medicine (06.04.2023)
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Optimisation and evaluation of viral genomic sequencing of SARS-CoV-2 rapid diagnostic tests: a laboratory and cohort-based study
Paull, Jillian S, Petros, Brittany A, Brock-Fisher, Taylor M, Jalbert, Samantha A, Selser, Victoria M, Messer, Katelyn S, Dobbins, Sabrina T, DeRuff, Katherine C, Deng, Davy, Springer, Michael, Sabeti, Pardis C
Published in The Lancet. Microbe (01.05.2024)
Published in The Lancet. Microbe (01.05.2024)
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Natural history of Ebola virus disease in rhesus monkeys shows viral variant emergence dynamics and tissue-specific host responses
Normandin, Erica, Triana, Sergio, Raju, Siddharth S., Lan, Tammy C.T., Lagerborg, Kim, Rudy, Melissa, Adams, Gordon C., DeRuff, Katherine C., Logue, James, Liu, David, Strebinger, Daniel, Rao, Arya, Messer, Katelyn S., Sacks, Molly, Adams, Ricky D., Janosko, Krisztina, Kotliar, Dylan, Shah, Rickey, Crozier, Ian, Rinn, John L., Melé, Marta, Honko, Anna N., Zhang, Feng, Babadi, Mehrtash, Luban, Jeremy, Bennett, Richard S., Shalek, Alex K., Barkas, Nikolaos, Lin, Aaron E., Hensley, Lisa E., Sabeti, Pardis C., Siddle, Katherine J.
Published in Cell genomics (13.12.2023)
Published in Cell genomics (13.12.2023)
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Transmission from vaccinated individuals in a large SARS-CoV-2 Delta variant outbreak
Siddle, Katherine J., Krasilnikova, Lydia A., Moreno, Gage K., Schaffner, Stephen F., Vostok, Johanna, Fitzgerald, Nicholas A., Lemieux, Jacob E., Barkas, Nikolaos, Loreth, Christine, Specht, Ivan, Tomkins-Tinch, Christopher H., Paull, Jillian S., Schaeffer, Beau, Taylor, Bradford P., Loftness, Bryn, Johnson, Hillary, Schubert, Petra L., Shephard, Hanna M., Doucette, Matthew, Fink, Timelia, Lang, Andrew S., Baez, Stephanie, Beauchamp, John, Hennigan, Scott, Buzby, Erika, Ash, Stephanie, Brown, Jessica, Clancy, Selina, Cofsky, Seana, Gagne, Luc, Hall, Joshua, Harrington, Rachel, Gionet, Gabrielle L., DeRuff, Katherine C., Vodzak, Megan E., Adams, Gordon C., Dobbins, Sabrina T., Slack, Sarah D., Reilly, Steven K., Anderson, Lisa M., Cipicchio, Michelle C., DeFelice, Matthew T., Grimsby, Jonna L., Anderson, Scott E., Blumenstiel, Brendan S., Meldrim, James C., Rooke, Heather M., Vicente, Gina, Smith, Natasha L., Messer, Katelyn S., Reagan, Faye L., Mandese, Zoe M., Lee, Matthew D., Ray, Marianne C., Fisher, Marissa E., Ulcena, Maesha A., Nolet, Corey M., English, Sean E., Larkin, Katie L., Vernest, Kyle, Chaluvadi, Sushma, Arvidson, Deirdre, Melchiono, Maurice, Covell, Theresa, Harik, Vaira, Brock-Fisher, Taylor, Dunn, Molly, Kearns, Amanda, Hanage, William P., Bernard, Clare, Philippakis, Anthony, Lennon, Niall J., Gabriel, Stacey B., Gallagher, Glen R., Smole, Sandra, Madoff, Lawrence C., Brown, Catherine M., Park, Daniel J., MacInnis, Bronwyn L., Sabeti, Pardis C.
Published in Cell (03.02.2022)
Published in Cell (03.02.2022)
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Journal Article
985. Pooled RNA Metagenomics to Enable Scalable, Unbiased Pathogen Detection and Surveillance
Messer, Katelyn S, Adams, Gordon, Paull, Jillian S, Livny, Jonathan, Lemieux, Jacob, Park, Daniel J, Sabeti, Pardis C, Siddle, Katherine J
Published in Open forum infectious diseases (27.11.2023)
Published in Open forum infectious diseases (27.11.2023)
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Comparative transmissibility of SARS-CoV-2 variants Delta and Alpha in New England, USA
Earnest, Rebecca, Uddin, Rockib, Matluk, Nicholas, Renzette, Nicholas, Turbett, Sarah E., Siddle, Katherine J., Loreth, Christine, Adams, Gordon, Tomkins-Tinch, Christopher H., Petrone, Mary E., Rothman, Jessica E., Breban, Mallery I., Koch, Robert Tobias, Billig, Kendall, Fauver, Joseph R., Vogels, Chantal B.F., Bilguvar, Kaya, De Kumar, Bony, Landry, Marie L., Peaper, David R., Omerza, Greg, Grieser, Heather, Meak, Sim, Martha, John, Dewey, Hannah B., King, Ewa, Huard, Richard C., Novitsky, Vlad, Darpolor, Josephine, Manne, Akarsh, Kantor, Rami, Smole, Sandra C., Brown, Catherine M., Fink, Timelia, Lang, Andrew S., Gallagher, Glen R., Pitzer, Virginia E., Sabeti, Pardis C., Gabriel, Stacey, MacInnis, Bronwyn L., Altajar, Ahmad, DeJesus, Alexandra, Brito, Anderson, Watkins, Anne E., Muyombwe, Anthony, Blumenstiel, Brendan S., Neal, Caleb, Kalinich, Chaney C., Liu, Chen, Castaldi, Christopher, Pearson, Claire, Bernard, Clare, Nolet, Corey M., Buzby, Erika, Laszlo, Eva, Reagan, Faye L., Vicente, Gina, Rooke, Heather M., Munger, Heidi, Johnson, Hillary, Tikhonova, Irina R., Ott, Isabel M., Razeq, Jafar, Meldrim, James C., Brown, Jessica, Wang, Jianhui, Vostok, Johanna, Beauchamp, John P., Grimsby, Jonna L., Messer, Katelyn S., Vernest, Kyle, Green, Lisa M., Webber, Lori, Gagne, Luc, Ray, Marianne C., Fisher, Marissa E., Barter, Mary, Lee, Matthew D., DeFelice, Matthew T., Cipicchio, Michelle C., Smith, Natasha L., Fitzgerald, Nicholas A., Kerantzas, Nicholas, Hui, Pei, Harrington, Rachel, Haye, Rashida, Lynch, Ryan, Cofsky, Seana, Clancy, Selina, Mane, Shrikant, Ash, Stephanie, Baez, Stephanie, Fleming, Steve, Murphy, Steven, Alpert, Tara, Mandese, Zoe M., Adams, Mark D., Park, Daniel J., Lemieux, Jacob E., Grubaugh, Nathan D.
Published in Cell reports. Medicine (19.04.2022)
Published in Cell reports. Medicine (19.04.2022)
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Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Household Transmission during the Omicron Era in Massachusetts: A Prospective, Case-Ascertained Study using Genomic Epidemiology
Banga, Jaspreet, Brock-Fisher, Taylor, Petros, Brittany A, Dai, Eric Y, Leonelli, Ariana T, Dobbins, Sabrina T, Messer, Katelyn S, Nathanson, Audrey B, Capone, Amelia, Littlehale, Nancy, Appiah-Danquah, Viola, Dim, Siang, Moreno, Gage K, Crowther, Maura, Lee, Kannon A, DeRuff, Katherine C, MacInnis, Bronwyn L, Springer, Michael, Sabeti, Pardis C, Stephenson, Kathryn E
Published in medRxiv : the preprint server for health sciences (07.02.2024)
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Published in medRxiv : the preprint server for health sciences (07.02.2024)
Journal Article
The 2022 RSV surge was driven by multiple viral lineages
Adams, Gordon, Moreno, Gage K, Petros, Brittany A, Uddin, Rockib, Levine, Zoe, Kotzen, Ben, Messer, Katelyn, Dobbins, Sabrina T, DeRuff, Katherine C, Loreth, Christine, Brock-Fisher, Taylor, Schaffner, Stephen F, Chaluvadi, Sushma, Kanjilal, Sanjat, Luban, Jeremy, Ozonoff, Al, Park, Daniel, Turbett, Sarah, Siddle, Katherine J, MacInnis, Bronwyn L, Sabeti, Pardis, Lemieux, Jacob
Published in medRxiv : the preprint server for health sciences (05.01.2023)
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Published in medRxiv : the preprint server for health sciences (05.01.2023)
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Evidence of transmission from fully vaccinated individuals in a large outbreak of the SARS-CoV-2 Delta variant in Provincetown, Massachusetts
Siddle, Katherine J, Krasilnikova, Lydia A, Moreno, Gage K, Schaffner, Stephen F, Vostok, Johanna, Fitzgerald, Nicholas A, Lemieux, Jacob E, Barkas, Nikolaos, Loreth, Christine, Specht, Ivan, Tomkins-Tinch, Christopher H, Silbert, Jillian, Schaeffer, Beau, Taylor, Bradford P, Loftness, Bryn, Johnson, Hillary, Schubert, Petra L, Shephard, Hanna M, Doucette, Matthew, Fink, Timelia, Lang, Andrew S, Baez, Stephanie, Beauchamp, John, Hennigan, Scott, Buzby, Erika, Ash, Stephanie, Brown, Jessica, Clancy, Selina, Cofsky, Seana, Gagne, Luc, Hall, Joshua, Harrington, Rachel, Gionet, Gabrielle L, DeRuff, Katherine C, Vodzak, Megan E, Adams, Gordon C, Dobbins, Sabrina T, Slack, Sarah D, Reilly, Steven K, Anderson, Lisa M, Cipicchio, Michelle C, DeFelice, Matthew T, Grimsby, Jonna L, Anderson, Scott E, Blumenstiel, Brendan S, Meldrim, James C, Rooke, Heather M, Vicente, Gina, Smith, Natasha L, Messer, Katelyn S, Reagan, Faye L, Mandese, Zoe M, Lee, Matthew D, Ray, Marianne C, Fisher, Marissa E, Ulcena, Maesha A, Nolet, Corey M, English, Sean E, Larkin, Katie L, Vernest, Kyle, Chaluvadi, Sushma, Arvidson, Deirdre, Melchiono, Maurice, Covell, Theresa, Harik, Vaira, Brock-Fisher, Taylor, Dunn, Molly, Kearns, Amanda, Hanage, William P, Bernard, Clare, Philippakis, Anthony, Lennon, Niall J, Gabriel, Stacey B, Gallagher, Glen R, Smole, Sandra, Madoff, Lawrence C, Brown, Catherine M, Park, Daniel J, MacInnis, Bronwyn L, Sabeti, Pardis C
Published in medRxiv : the preprint server for health sciences (20.10.2021)
Published in medRxiv : the preprint server for health sciences (20.10.2021)
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