Gut-microbiota-targeted diets modulate human immune status
Wastyk, Hannah C., Fragiadakis, Gabriela K., Perelman, Dalia, Dahan, Dylan, Merrill, Bryan D., Yu, Feiqiao B., Topf, Madeline, Gonzalez, Carlos G., Van Treuren, William, Han, Shuo, Robinson, Jennifer L., Elias, Joshua E., Sonnenburg, Erica D., Gardner, Christopher D., Sonnenburg, Justin L.
Published in Cell (05.08.2021)
Published in Cell (05.08.2021)
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Journal Article
A metabolomics pipeline for the mechanistic interrogation of the gut microbiome
Han, Shuo, Van Treuren, Will, Fischer, Curt R, Merrill, Bryan D, DeFelice, Brian C, Sanchez, Juan M, Higginbottom, Steven K, Guthrie, Leah, Fall, Lalla A, Dodd, Dylan, Fischbach, Michael A, Sonnenburg, Justin L
Published in Nature (London) (15.07.2021)
Published in Nature (London) (15.07.2021)
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Journal Article
Robust variation in infant gut microbiome assembly across a spectrum of lifestyles
Olm, Matthew R, Dahan, Dylan, Carter, Matthew M, Merrill, Bryan D, Yu, Feiqiao B, Jain, Sunit, Meng, Xiandong, Tripathi, Surya, Wastyk, Hannah, Neff, Norma, Holmes, Susan, Sonnenburg, Erica D, Jha, Aashish R, Sonnenburg, Justin L
Published in Science (American Association for the Advancement of Science) (10.06.2022)
Published in Science (American Association for the Advancement of Science) (10.06.2022)
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Journal Article
DDX6 Represses Aberrant Activation of Interferon-Stimulated Genes
Lumb, Jennifer H., Li, Qin, Popov, Lauren M., Ding, Siyuan, Keith, Marie T., Merrill, Bryan D., Greenberg, Harry B., Li, Jin Billy, Carette, Jan E.
Published in Cell reports (Cambridge) (25.07.2017)
Published in Cell reports (Cambridge) (25.07.2017)
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Journal Article
The CIAMIB: a Large and Metabolically Diverse Collection of Inflammation-Associated Bacteria from the Murine Gut
Wong, Erin Oi-Yan, Brownlie, Emma Joan Elizabeth, Ng, Katharine Michelle, Kathirgamanathan, Sornnujah, Yu, Feiqiao Brian, Merrill, Bryan D, Huang, Kerwyn Casey, Martin, Alberto, Tropini, Carolina, Navarre, William Wiley
Published in mBio (26.04.2022)
Published in mBio (26.04.2022)
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Journal Article
Characterization of Five Novel Brevibacillus Bacteriophages and Genomic Comparison of Brevibacillus Phages
Berg, Jordan A, Merrill, Bryan D, Crockett, Justin T, Esplin, Kyle P, Evans, Marlee R, Heaton, Karli E, Hilton, Jared A, Hyde, Jonathan R, McBride, Morgan S, Schouten, Jordan T, Simister, Austin R, Thurgood, Trever L, Ward, Andrew T, Breakwell, Donald P, Hope, Sandra, Grose, Julianne H
Published in PloS one (01.06.2016)
Published in PloS one (01.06.2016)
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Journal Article
A gut bacterial pathway metabolizes aromatic amino acids into nine circulating metabolites
Dodd, Dylan, Spitzer, Matthew H, Van Treuren, William, Merrill, Bryan D, Hryckowian, Andrew J, Higginbottom, Steven K, Le, Anthony, Cowan, Tina M, Nolan, Garry P, Fischbach, Michael A, Sonnenburg, Justin L
Published in Nature (London) (30.11.2017)
Published in Nature (London) (30.11.2017)
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Journal Article
Bystander Phage Therapy: Inducing Host-Associated Bacteria to Produce Antimicrobial Toxins against the Pathogen Using Phages
Brady, T Scott, Fajardo, Christopher P, Merrill, Bryan D, Hilton, Jared A, Graves, Kiel A, Eggett, Dennis L, Hope, Sandra
Published in Antibiotics (Basel) (04.12.2018)
Published in Antibiotics (Basel) (04.12.2018)
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Journal Article
Ultra-deep sequencing of Hadza hunter-gatherers recovers vanishing gut microbes
Carter, Matthew M., Olm, Matthew R., Merrill, Bryan D., Dahan, Dylan, Tripathi, Surya, Spencer, Sean P., Yu, Feiqiao B., Jain, Sunit, Neff, Norma, Jha, Aashish R., Sonnenburg, Erica D., Sonnenburg, Justin L.
Published in Cell (06.07.2023)
Published in Cell (06.07.2023)
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Journal Article
Community-led, integrated, reproducible multi-omics with anvi'o
Eren, A Murat, Kiefl, Evan, Shaiber, Alon, Veseli, Iva, Miller, Samuel E, Schechter, Matthew S, Fink, Isaac, Pan, Jessica N, Yousef, Mahmoud, Fogarty, Emily C, Trigodet, Florian, Watson, Andrea R, Esen, Özcan C, Moore, Ryan M, Clayssen, Quentin, Lee, Michael D, Kivenson, Veronika, Graham, Elaina D, Merrill, Bryan D, Karkman, Antti, Blankenberg, Daniel, Eppley, John M, Sjödin, Andreas, Scott, Jarrod J, Vázquez-Campos, Xabier, McKay, Luke J, McDaniel, Elizabeth A, Stevens, Sarah L R, Anderson, Rika E, Fuessel, Jessika, Fernandez-Guerra, Antonio, Maignien, Lois, Delmont, Tom O, Willis, Amy D
Published in Nature microbiology (01.01.2021)
Published in Nature microbiology (01.01.2021)
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Journal Article
A PCR-Based Method for Distinguishing between Two Common Beehive Bacteria, Paenibacillus larvae and Brevibacillus laterosporus
Berg, Jordan A, Merrill, Bryan D, Breakwell, Donald P, Hope, Sandra, Grose, Julianne H
Published in Applied and environmental microbiology (15.11.2018)
Published in Applied and environmental microbiology (15.11.2018)
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Journal Article
Bacteriophages as an alternative to conventional antibiotic use for the prevention or treatment of Paenibacillus larvae in honeybee hives
Brady, T. Scott, Merrill, Bryan D., Hilton, Jared A., Payne, Ashley M., Stephenson, Michael B., Hope, Sandra
Published in Journal of invertebrate pathology (01.11.2017)
Published in Journal of invertebrate pathology (01.11.2017)
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Journal Article
Phase-variable capsular polysaccharides and lipoproteins modify bacteriophage susceptibility in Bacteroides thetaiotaomicron
Porter, Nathan T, Hryckowian, Andrew J, Merrill, Bryan D, Fuentes, Jaime J, Gardner, Jackson O, Glowacki, Robert W P, Singh, Shaleni, Crawford, Ryan D, Snitkin, Evan S, Sonnenburg, Justin L, Martens, Eric C
Published in Nature microbiology (01.09.2020)
Published in Nature microbiology (01.09.2020)
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Journal Article
The genomes, proteomes, and structures of three novel phages that infect the Bacillus cereus group and carry putative virulence factors
Grose, Julianne H, Belnap, David M, Jensen, Jordan D, Mathis, Andrew D, Prince, John T, Merrill, Bryan D, Burnett, Sandra H, Breakwell, Donald P
Published in Journal of virology (01.10.2014)
Published in Journal of virology (01.10.2014)
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Journal Article
Putative type 1 thymidylate synthase and dihydrofolate reductase as signature genes of a novel Bastille-like group of phages in the subfamily Spounavirinae
Asare, Paul Tetteh, Jeong, Tae-Yong, Ryu, Sangryeol, Klumpp, Jochen, Loessner, Martin J, Merrill, Bryan D, Kim, Kwang-Pyo
Published in BMC genomics (07.08.2015)
Published in BMC genomics (07.08.2015)
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Journal Article
Complete Genome Sequences of Paenibacillus larvae Phages BN12, Dragolir, Kiel007, Leyra, Likha, Pagassa, PBL1c, and Tadhana
Walker, Jamison K, Merrill, Bryan D, Berg, Jordan A, Dhalai, Aziza, Dingman, Douglas W, Fajardo, Chris P, Graves, Kiel, Hill, Hunter L, Hilton, Jared A, Imahara, Cameron, Knabe, Bradley K, Mangohig, James, Monk, Josh, Mun, Heejin, Payne, Ashley M, Salisbury, Alicia, Stamereilers, Casey, Velez, Kathie, Ward, Andy T, Breakwell, Donald P, Grose, Julianne H, Hope, Sandra, Tsourkas, Philippos K
Published in Genome announcements (Washington, DC) (14.06.2018)
Published in Genome announcements (Washington, DC) (14.06.2018)
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Journal Article
Complete Genome Sequences of 18 Paenibacillus larvae Phages from the Western United States
Merrill, Bryan D, Fajardo, Christopher P, Hilton, Jared A, Payne, Ashley M, Ward, Andy T, Walker, Jamison K, Dhalai, Aziza, Imahara, Cameron, Mangohig, James, Monk, Josh, Pascacio, Cristian, Rai, Padmani, Salisbury, Alicia, Velez, Kathie, Bloomfield, Travis J, Buhler, Brett, Duncan, Steven G, Fuhriman, David A, George, Josil, Graves, Kiel, Heaton, Karli, Hill, Hunter L, Kim, Michelle, Knabe, Bradley K, Ririe, Devin B, Rogers, Spencer L, Stamereilers, Casey, Stephenson, Michael B, Usher, Brittian K, Ward, Colton S, Withers, Jacob M, Wright, Cole K, Breakwell, Donald P, Grose, Julianne H, Hope, Sandra, Tsourkas, Philippos K
Published in Microbiology resource announcements (04.10.2018)
Published in Microbiology resource announcements (04.10.2018)
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Journal Article
Genome Sequences of Five Additional Brevibacillus laterosporus Bacteriophages
Merrill, Bryan D, Berg, Jordan A, Graves, Kiel A, Ward, Andy T, Hilton, Jared A, Wake, Braden N, Grose, Julianne H, Breakwell, Donald P, Burnett, Sandra H
Published in Genome announcements (Washington, DC) (22.10.2015)
Published in Genome announcements (Washington, DC) (22.10.2015)
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Journal Article