A hybrid gene selection approach to create the S1500+ targeted gene sets for use in high-throughput transcriptomics
Mav, Deepak, Shah, Ruchir R, Howard, Brian E, Auerbach, Scott S, Bushel, Pierre R, Collins, Jennifer B, Gerhold, David L, Judson, Richard S, Karmaus, Agnes L, Maull, Elizabeth A, Mendrick, Donna L, Merrick, B Alex, Sipes, Nisha S, Svoboda, Daniel, Paules, Richard S
Published in PloS one (20.02.2018)
Published in PloS one (20.02.2018)
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Journal Article
SWIFT-Active Screener: Accelerated document screening through active learning and integrated recall estimation
Howard, Brian E., Phillips, Jason, Tandon, Arpit, Maharana, Adyasha, Elmore, Rebecca, Mav, Deepak, Sedykh, Alex, Thayer, Kristina, Merrick, B. Alex, Walker, Vickie, Rooney, Andrew, Shah, Ruchir R.
Published in Environment international (01.05.2020)
Published in Environment international (01.05.2020)
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Journal Article
Identification of Compounds That Inhibit Estrogen-Related Receptor Alpha Signaling Using High-Throughput Screening Assays
Lynch, Caitlin, Zhao, Jinghua, Sakamuru, Srilatha, Zhang, Li, Huang, Ruili, Witt, Kristine L, Merrick, B Alex, Teng, Christina T, Xia, Menghang
Published in Molecules (Basel, Switzerland) (27.02.2019)
Published in Molecules (Basel, Switzerland) (27.02.2019)
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Journal Article
Arsenite malignantly transforms human prostate epithelial cells in vitro by gene amplification of mutated KRAS
Merrick, B Alex, Phadke, Dhiral P, Bostrom, Meredith A, Shah, Ruchir R, Wright, Garron M, Wang, Xinguo, Gordon, Oksana, Pelch, Katherine E, Auerbach, Scott S, Paules, Richard S, DeVito, Michael J, Waalkes, Michael P, Tokar, Erik J
Published in PloS one (22.04.2019)
Published in PloS one (22.04.2019)
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Journal Article
BMDExpress 2: enhanced transcriptomic dose-response analysis workflow
Phillips, Jason R, Svoboda, Daniel L, Tandon, Arpit, Patel, Shyam, Sedykh, Alex, Mav, Deepak, Kuo, Byron, Yauk, Carole L, Yang, Longlong, Thomas, Russell S, Gift, Jeff S, Davis, J Allen, Olszyk, Louis, Merrick, B Alex, Paules, Richard S, Parham, Fred, Saddler, Trey, Shah, Ruchir R, Auerbach, Scott S
Published in Bioinformatics (15.05.2019)
Published in Bioinformatics (15.05.2019)
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Journal Article
Bisphenol A affects androgen receptor function via multiple mechanisms
Teng, Christina, Goodwin, Bonnie, Shockley, Keith, Xia, Menghang, Huang, Ruili, Norris, John, Merrick, B. Alex, Jetten, Anton M., Austin, Christopher P., Tice, Raymond R.
Published in Chemico-biological interactions (25.05.2013)
Published in Chemico-biological interactions (25.05.2013)
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Journal Article
Transcriptome and DNA Methylome Analysis in a Mouse Model of Diet-Induced Obesity Predicts Increased Risk of Colorectal Cancer
Li, Ruifang, Grimm, Sara A., Mav, Deepak, Gu, Haiwei, Djukovic, Danijel, Shah, Ruchir, Merrick, B. Alex, Raftery, Daniel, Wade, Paul A.
Published in Cell reports (Cambridge) (16.01.2018)
Published in Cell reports (Cambridge) (16.01.2018)
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Journal Article
Leucine-rich repeats and calponin homology containing 4 (Lrch4) regulates the innate immune response
Aloor, Jim J., Azzam, Kathleen M., Guardiola, John J., Gowdy, Kymberly M., Madenspacher, Jennifer H., Gabor, Kristin A., Mueller, Geoffrey A., Lin, Wan-Chi, Lowe, Julie M., Gruzdev, Artiom, Henderson, Michael W., Draper, David W., Merrick, B. Alex, Fessler, Michael B.
Published in The Journal of biological chemistry (08.02.2019)
Published in The Journal of biological chemistry (08.02.2019)
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Journal Article
RNA-Seq profiling reveals novel hepatic gene expression pattern in aflatoxin B1 treated rats
Merrick, B Alex, Phadke, Dhiral P, Auerbach, Scott S, Mav, Deepak, Stiegelmeyer, Suzy M, Shah, Ruchir R, Tice, Raymond R
Published in PloS one (22.04.2013)
Published in PloS one (22.04.2013)
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Journal Article
HAfTs are novel lncRNA transcripts from aflatoxin exposure
Merrick, B Alex, Chang, Justin S, Phadke, Dhiral P, Bostrom, Meredith A, Shah, Ruchir R, Wang, Xinguo, Gordon, Oksana, Wright, Garron M
Published in PloS one (19.01.2018)
Published in PloS one (19.01.2018)
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Journal Article
Identifying Compounds with Genotoxicity Potential Using Tox21 High-Throughput Screening Assays
Hsieh, Jui-Hua, Smith-Roe, Stephanie L, Huang, Ruili, Sedykh, Alexander, Shockley, Keith R, Auerbach, Scott S, Merrick, B. Alex, Xia, Menghang, Tice, Raymond R, Witt, Kristine L
Published in Chemical research in toxicology (15.07.2019)
Published in Chemical research in toxicology (15.07.2019)
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Journal Article
Insights into Repeated Renal Injury Using RNA-Seq with Two New RPTEC Cell Lines
Merrick, B Alex, Martin, Negin P, Brooks, Ashley M, Foley, Julie F, Dunlap, Paul E, Ramaiahgari, Sreenivasa, Fannin, Rick D, Gerrish, Kevin E
Published in International journal of molecular sciences (01.09.2023)
Published in International journal of molecular sciences (01.09.2023)
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Journal Article
Healthcare resource use in hospitalized patients with carbapenem-resistant Gram-negative infections
Merrick, B., Tan, M.K.I., Bisnauthsing, K., Goldenberg, S.D.
Published in The Journal of hospital infection (01.04.2021)
Published in The Journal of hospital infection (01.04.2021)
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Journal Article
DNA methylation in mice is influenced by genetics as well as sex and life experience
Grimm, Sara A, Shimbo, Takashi, Takaku, Motoki, Thomas, James W, Auerbach, Scott, Bennett, Brian D, Bucher, John R, Burkholder, Adam B, Day, Frank, Du, Ying, Duncan, Christopher G, French, John E, Foley, Julie F, Li, Jianying, Merrick, B Alex, Tice, Raymond R, Wang, Tianyuan, Xu, Xiaojiang, Bushel, Pierre R, Fargo, David C, Mullikin, James C, Wade, Paul A
Published in Nature communications (18.01.2019)
Published in Nature communications (18.01.2019)
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Journal Article
Utility of diffusion-weighted MRI in distinguishing benign and malignant hepatic lesions
Miller, Frank H., Hammond, Nancy, Siddiqi, Aheed J., Shroff, Sagar, Khatri, Gaurav, Wang, Yi, Merrick, Laura B., Nikolaidis, Paul
Published in Journal of magnetic resonance imaging (01.07.2010)
Published in Journal of magnetic resonance imaging (01.07.2010)
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Journal Article
Whole exome and transcript profiling of liver following aflatoxin B1 exposure in rats
Foley, Julie F., Elgart, Brian, Phadke, Dhiral, Mav, Deepak, Tripodi, Ignacio, Clausen, Nicholas, Weick, Madeleine, Gladwell, Wes, Gerrish, Kevin, Shah, Ruchir, Merrick, B. Alex
Published in Journal of applied toxicology (01.09.2023)
Published in Journal of applied toxicology (01.09.2023)
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Journal Article
Overview of the second edition of the joint British Society of Gastroenterology and Healthcare Infection Society faecal microbiota transplant guidelines, 2024
Mullish, B.H., Bak, A., Merrick, B., Quraishi, M.N., Goldenberg, S.D., Williams, H.R.T.
Published in The Journal of hospital infection (01.06.2024)
Published in The Journal of hospital infection (01.06.2024)
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