Network-Thinking: Graphs to Analyze Microbial Complexity and Evolution
Corel, Eduardo, Lopez, Philippe, Méheust, Raphaël, Bapteste, Eric
Published in Trends in microbiology (Regular ed.) (01.03.2016)
Published in Trends in microbiology (Regular ed.) (01.03.2016)
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Journal Article
The distinction of CPR bacteria from other bacteria based on protein family content
Méheust, Raphaël, Burstein, David, Castelle, Cindy J., Banfield, Jillian F.
Published in Nature communications (13.09.2019)
Published in Nature communications (13.09.2019)
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Journal Article
Chimeric origins of ochrophytes and haptophytes revealed through an ancient plastid proteome
Dorrell, Richard G, Gile, Gillian, McCallum, Giselle, Méheust, Raphaël, Bapteste, Eric P, Klinger, Christen M, Brillet-Guéguen, Loraine, Freeman, Katalina D, Richter, Daniel J, Bowler, Chris
Published in eLife (12.05.2017)
Published in eLife (12.05.2017)
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Journal Article
Extracellular electron transfer powers flavinylated extracellular reductases in Gram-positive bacteria
Light, Samuel H., Méheust, Raphaël, Ferrell, Jessica L., Cho, Jooyoung, Deng, David, Agostoni, Marco, Iavarone, Anthony T., Banfield, Jillian F., D’Orazio, Sarah E. F., Portnoy, Daniel A.
Published in Proceedings of the National Academy of Sciences - PNAS (26.12.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (26.12.2019)
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Journal Article
Structure of the bacterial ribosome at 2 Å resolution
Watson, Zoe L, Ward, Fred R, Méheust, Raphaël, Ad, Omer, Schepartz, Alanna, Banfield, Jillian F, Cate, Jamie Hd
Published in eLife (14.09.2020)
Published in eLife (14.09.2020)
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Journal Article
Protein Family Content Uncovers Lineage Relationships and Bacterial Pathway Maintenance Mechanisms in DPANN Archaea
Castelle, Cindy J., Méheust, Raphaël, Jaffe, Alexander L., Seitz, Kiley, Gong, Xianzhe, Baker, Brett J., Banfield, Jillian F.
Published in Frontiers in microbiology (01.06.2021)
Published in Frontiers in microbiology (01.06.2021)
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Journal Article
Clades of huge phages from across Earth’s ecosystems
Al-Shayeb, Basem, Sachdeva, Rohan, Chen, Lin-Xing, Ward, Fred, Munk, Patrick, Devoto, Audra, Castelle, Cindy J., Olm, Matthew R., Bouma-Gregson, Keith, Amano, Yuki, He, Christine, Méheust, Raphaël, Brooks, Brandon, Thomas, Alex, Lavy, Adi, Matheus-Carnevali, Paula, Sun, Christine, Goltsman, Daniela S. A., Borton, Mikayla A., Sharrar, Allison, Jaffe, Alexander L., Nelson, Tara C., Kantor, Rose, Keren, Ray, Lane, Katherine R., Farag, Ibrahim F., Lei, Shufei, Finstad, Kari, Amundson, Ronald, Anantharaman, Karthik, Zhou, Jinglie, Probst, Alexander J., Power, Mary E., Tringe, Susannah G., Li, Wen-Jun, Wrighton, Kelly, Harrison, Sue, Morowitz, Michael, Relman, David A., Doudna, Jennifer A., Lehours, Anne-Catherine, Warren, Lesley, Cate, Jamie H. D., Santini, Joanne M., Banfield, Jillian F.
Published in Nature (London) (20.02.2020)
Published in Nature (London) (20.02.2020)
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Journal Article
A global ocean atlas of eukaryotic genes
Carradec, Quentin, Pelletier, Eric, Da Silva, Corinne, Alberti, Adriana, Seeleuthner, Yoann, Blanc-Mathieu, Romain, Lima-Mendez, Gipsi, Rocha, Fabio, Tirichine, Leila, Labadie, Karine, Kirilovsky, Amos, Bertrand, Alexis, Engelen, Stefan, Madoui, Mohammed-Amin, Méheust, Raphaël, Poulain, Julie, Romac, Sarah, Richter, Daniel J., Yoshikawa, Genki, Dimier, Céline, Kandels-Lewis, Stefanie, Picheral, Marc, Searson, Sarah, Jaillon, Olivier, Aury, Jean-Marc, Karsenti, Eric, Sullivan, Matthew B., Sunagawa, Shinichi, Bork, Peer, Not, Fabrice, Hingamp, Pascal, Raes, Jeroen, Guidi, Lionel, Ogata, Hiroyuki, de Vargas, Colomban, Iudicone, Daniele, Bowler, Chris, Wincker, Patrick
Published in Nature communications (25.01.2018)
Published in Nature communications (25.01.2018)
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Journal Article
A refined picture of the native amine dehydrogenase family revealed by extensive biodiversity screening
Elisée, Eddy, Ducrot, Laurine, Méheust, Raphaël, Bastard, Karine, Fossey-Jouenne, Aurélie, Grogan, Gideon, Pelletier, Eric, Petit, Jean-Louis, Stam, Mark, de Berardinis, Véronique, Zaparucha, Anne, Vallenet, David, Vergne-Vaxelaire, Carine
Published in Nature communications (10.06.2024)
Published in Nature communications (10.06.2024)
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Journal Article
Distinct Energy-Coupling Factor Transporter Subunits Enable Flavin Acquisition and Extracytosolic Trafficking for Extracellular Electron Transfer in Listeria monocytogenes
Rivera-Lugo, Rafael, Huang, Shuo, Lee, Frank, Méheust, Raphaël, Iavarone, Anthony T, Sidebottom, Ashley M, Oldfield, Eric, Portnoy, Daniel A, Light, Samuel H
Published in mBio (28.02.2023)
Published in mBio (28.02.2023)
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Journal Article
Large freshwater phages with the potential to augment aerobic methane oxidation
Chen, Lin-Xing, Méheust, Raphaël, Crits-Christoph, Alexander, McMahon, Katherine D., Nelson, Tara Colenbrander, Slater, Gregory F., Warren, Lesley A., Banfield, Jillian F.
Published in Nature microbiology (01.12.2020)
Published in Nature microbiology (01.12.2020)
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Journal Article
Bipartite Network Analysis of Gene Sharings in the Microbial World
Corel, Eduardo, Méheust, Raphaël, Watson, Andrew K, McInerney, James O, Lopez, Philippe, Bapteste, Eric
Published in Molecular biology and evolution (01.04.2018)
Published in Molecular biology and evolution (01.04.2018)
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Journal Article
Groundwater Elusimicrobia are metabolically diverse compared to gut microbiome Elusimicrobia and some have a novel nitrogenase paralog
Méheust, Raphaël, Castelle, Cindy J., Matheus Carnevali, Paula B., Farag, Ibrahim F., He, Christine, Chen, Lin-Xing, Amano, Yuki, Hug, Laura A., Banfield, Jillian F.
Published in The ISME Journal (01.12.2020)
Published in The ISME Journal (01.12.2020)
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Journal Article