History and Future Perspectives on the Discipline of Quantitative Systems Pharmacology Modeling and Its Applications
Azer, Karim, Kaddi, Chanchala D, Barrett, Jeffrey S, Bai, Jane P F, McQuade, Sean T, Merrill, Nathaniel J, Piccoli, Benedetto, Neves-Zaph, Susana, Marchetti, Luca, Lombardo, Rosario, Parolo, Silvia, Immanuel, Selva Rupa Christinal, Baliga, Nitin S
Published in Frontiers in physiology (25.03.2021)
Published in Frontiers in physiology (25.03.2021)
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Journal Article
Linear-In-Flux-Expressions Methodology: Toward a Robust Mathematical Framework for Quantitative Systems Pharmacology Simulators
McQuade, Sean T, Abrams, Ruth E, Barrett, Jeffrey S, Piccoli, Benedetto, Azer, Karim
Published in Gene Regulation and Systems Biology (26.07.2017)
Published in Gene Regulation and Systems Biology (26.07.2017)
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Journal Article
Book Review
Equilibria and control of metabolic networks with enhancers and inhibitors
An, Zheming, J. Merrill, Nathaniel, T. McQuade, Sean, Piccoli, Benedetto
Published in Mathematics in engineering (01.01.2019)
Published in Mathematics in engineering (01.01.2019)
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Journal Article
A pipeline for testing drug mechanism of action and combination therapies: From microarray data to simulations via Linear-In-Flux-Expressions: Testing four-drug combinations for tuberculosis treatment
Denaro, Christopher, Merrill, Nathaniel J, McQuade, Sean T, Reed, Logan, Azer, Karim, Piccoli, Benedetto
Published in Mathematical biosciences (01.06.2023)
Published in Mathematical biosciences (01.06.2023)
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Journal Article
A rigorous multi-population multi-lane hybrid traffic model for dissipation of waves via autonomous vehicles
Kardous, Nicolas, Hayat, Amaury, McQuade, Sean T., Gong, Xiaoqian, Truong, Sydney, Mezair, Tinhinane, Arnold, Paige, Delorenzo, Ryan, Bayen, Alexandre, Piccoli, Benedetto
Published in The European physical journal. ST, Special topics (01.07.2022)
Published in The European physical journal. ST, Special topics (01.07.2022)
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Journal Article
Are Commercially Implemented Adaptive Cruise Control Systems String Stable?
Gunter, George, Gloudemans, Derek, Stern, Raphael E., McQuade, Sean, Bhadani, Rahul, Bunting, Matt, Delle Monache, Maria Laura, Lysecky, Roman, Seibold, Benjamin, Sprinkle, Jonathan, Piccoli, Benedetto, Work, Daniel B.
Published in IEEE transactions on intelligent transportation systems (01.11.2021)
Published in IEEE transactions on intelligent transportation systems (01.11.2021)
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Journal Article
A pipeline for testing drug mechanism of action and combination therapies: From microarray data to simulations via Linear-In-Flux-Expressions
Denaro, Christopher, Merrill, Nathaniel J., McQuade, Sean T., Reed, Logan, Azer, Karim, Piccoli, Benedetto
Published in Mathematical biosciences (01.06.2023)
Published in Mathematical biosciences (01.06.2023)
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Journal Article
Car-Following Models: A Multidisciplinary Review
Zhang, Tianya Terry, Jin, Peter J., McQuade, Sean T., Bayen, Alexandre, Piccoli, Benedetto
Published in IEEE transactions on intelligent vehicles (03.06.2024)
Published in IEEE transactions on intelligent vehicles (03.06.2024)
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Journal Article
Car-Following Models: A Multidisciplinary Review
Tianya Terry Zhang, Ph D, Jin, Peter J, McQuade, Sean T, Bayen, Alexandre, Piccoli, Benedetto
Published in arXiv.org (05.03.2024)
Published in arXiv.org (05.03.2024)
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Journal Article
Medium-scale to large-scale implementation of cyber-physical human experiments in live traffic
McQuade, Sean T., Denaro, Chris, Mahmood, Malaika, Lee, Jonathan W., Gumm, Gracie, Sprinkle, Jonathan M., Work, Daniel B., Piccoli, Benedetto, Seibold, Benjamin, Bayen, Alexandre M.
Published in IFAC-PapersOnLine (01.01.2022)
Published in IFAC-PapersOnLine (01.01.2022)
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Journal Article
Conference Proceeding
A deep language model to predict metabolic network equilibria
Charton, François, Hayat, Amaury, McQuade, Sean T, Merrill, Nathaniel J, Piccoli, Benedetto
Year of Publication 07.12.2021
Year of Publication 07.12.2021
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Journal Article
Optimization of vaccination for COVID-19 in the midst of a pandemic
Luo, Qi, Weightman, Ryan, McQuade, Sean T, Diaz, Mateo, Trélat, Emmanuel, Barbour, William, Work, Dan, Samaranayake, Samitha, Piccoli, Benedetto
Year of Publication 17.03.2022
Year of Publication 17.03.2022
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Journal Article
A rigorous multi-population multi-lane hybrid traffic model and its mean-field limit for dissipation of waves via autonomous vehicles
Kardous, Nicolas, Hayat, Amaury, McQuade, Sean T, Gong, Xiaoqian, Truong, Sydney, Mezair, Tinhinane, Arnold, Paige, Delorenzo, Ryan, Bayen, Alexandre, Piccoli, Benedetto
Published in arXiv.org (13.05.2022)
Published in arXiv.org (13.05.2022)
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Paper
Journal Article
Limitations and Improvements of the Intelligent Driver Model (IDM)
Albeaik, Saleh, Bayen, Alexandre, Chiri, Maria Teresa, Gong, Xiaoqian, Hayat, Amaury, Kardous, Nicolas, Keimer, Alexander, McQuade, Sean T, Piccoli, Benedetto, You, Yiling
Year of Publication 02.04.2021
Year of Publication 02.04.2021
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Journal Article
Equilibria for Large Metabolic Systems and the LIFE Approach
McQuade, Sean T., An, Zheming, Merrill, Nathaniel J., Abrams, Ruth E., Azer, Karim, Piccoli, Benedetto
Published in 2018 Annual American Control Conference (ACC) (01.06.2018)
Published in 2018 Annual American Control Conference (ACC) (01.06.2018)
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Conference Proceeding
Stability of Metabolic Networks via Linear-In-Flux-Expressions
Merrill, Nathaniel J, An, Zheming, McQuade, Sean T, Garin, Federica, Azer, Karim, Abrams, Ruth E, Piccoli, Benedetto
Published in arXiv.org (28.03.2019)
Published in arXiv.org (28.03.2019)
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Paper
Journal Article
A deep language model to predict metabolic network equilibria
Charton, François, Hayat, Amaury, McQuade, Sean T, Merrill, Nathaniel J, Piccoli, Benedetto
Published in arXiv.org (07.12.2021)
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Published in arXiv.org (07.12.2021)
Paper