A Whole-Genome Analysis Framework for Effective Identification of Pathogenic Regulatory Variants in Mendelian Disease
Smedley, Damian, Schubach, Max, Jacobsen, Julius O.B., Köhler, Sebastian, Zemojtel, Tomasz, Spielmann, Malte, Jäger, Marten, Hochheiser, Harry, Washington, Nicole L., McMurry, Julie A., Haendel, Melissa A., Mungall, Christopher J., Lewis, Suzanna E., Groza, Tudor, Valentini, Giorgio, Robinson, Peter N.
Published in American journal of human genetics (01.09.2016)
Published in American journal of human genetics (01.09.2016)
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Journal Article
The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species
Mungall, Christopher J, McMurry, Julie A, Köhler, Sebastian, Balhoff, James P, Borromeo, Charles, Brush, Matthew, Carbon, Seth, Conlin, Tom, Dunn, Nathan, Engelstad, Mark, Foster, Erin, Gourdine, J P, Jacobsen, Julius O B, Keith, Dan, Laraway, Bryan, Lewis, Suzanna E, NguyenXuan, Jeremy, Shefchek, Kent, Vasilevsky, Nicole, Yuan, Zhou, Washington, Nicole, Hochheiser, Harry, Groza, Tudor, Smedley, Damian, Robinson, Peter N, Haendel, Melissa A
Published in Nucleic acids research (04.01.2017)
Published in Nucleic acids research (04.01.2017)
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Journal Article
Long COVID risk and pre-COVID vaccination in an EHR-based cohort study from the RECOVER program
Brannock, M. Daniel, Chew, Robert F., Preiss, Alexander J., Hadley, Emily C., Redfield, Signe, McMurry, Julie A., Leese, Peter J., Girvin, Andrew T., Crosskey, Miles, Zhou, Andrea G., Moffitt, Richard A., Funk, Michele Jonsson, Pfaff, Emily R., Haendel, Melissa A., Chute, Christopher G.
Published in Nature communications (22.05.2023)
Published in Nature communications (22.05.2023)
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Journal Article
Coding long COVID: characterizing a new disease through an ICD-10 lens
Pfaff, Emily R, Madlock-Brown, Charisse, Baratta, John M, Bhatia, Abhishek, Davis, Hannah, Girvin, Andrew, Hill, Elaine, Kelly, Elizabeth, Kostka, Kristin, Loomba, Johanna, McMurry, Julie A, Wong, Rachel, Bennett, Tellen D, Moffitt, Richard, Chute, Christopher G, Haendel, Melissa
Published in BMC medicine (16.02.2023)
Published in BMC medicine (16.02.2023)
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Journal Article
UVB Radiation Alone May Not Explain Sunlight Inactivation of SARS-CoV-2
Luzzatto-Fegiz, Paolo, Temprano-Coleto, Fernando, Peaudecerf, François J, Landel, Julien R, Zhu, Yangying, McMurry, Julie A
Published in Journal of Infectious Diseases (15.04.2021)
Published in Journal of Infectious Diseases (15.04.2021)
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Journal Article
Publication
Interpretable prioritization of splice variants in diagnostic next-generation sequencing
Danis, Daniel, Jacobsen, Julius O.B., Carmody, Leigh C., Gargano, Michael A., McMurry, Julie A., Hegde, Ayushi, Haendel, Melissa A., Valentini, Giorgio, Smedley, Damian, Robinson, Peter N.
Published in American journal of human genetics (02.09.2021)
Published in American journal of human genetics (02.09.2021)
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Journal Article
Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data
McMurry, Julie A, Juty, Nick, Blomberg, Niklas, Burdett, Tony, Conlin, Tom, Conte, Nathalie, Courtot, Mélanie, Deck, John, Dumontier, Michel, Fellows, Donal K, Gonzalez-Beltran, Alejandra, Gormanns, Philipp, Grethe, Jeffrey, Hastings, Janna, Hériché, Jean-Karim, Hermjakob, Henning, Ison, Jon C, Jimenez, Rafael C, Jupp, Simon, Kunze, John, Laibe, Camille, Le Novère, Nicolas, Malone, James, Martin, Maria Jesus, McEntyre, Johanna R, Morris, Chris, Muilu, Juha, Müller, Wolfgang, Rocca-Serra, Philippe, Sansone, Susanna-Assunta, Sariyar, Murat, Snoep, Jacky L, Soiland-Reyes, Stian, Stanford, Natalie J, Swainston, Neil, Washington, Nicole, Williams, Alan R, Wimalaratne, Sarala M, Winfree, Lilly M, Wolstencroft, Katherine, Goble, Carole, Mungall, Christopher J, Haendel, Melissa A, Parkinson, Helen
Published in PLoS biology (29.06.2017)
Published in PLoS biology (29.06.2017)
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Journal Article
Community risks for SARS-CoV-2 infection among fully vaccinated US adults by rurality: A retrospective cohort study from the National COVID Cohort Collaborative
Anzalone, Alfred Jerrod, Sun, Jing, Vinson, Amanda J, Beasley, William H, Hillegass, William B, Murray, Kimberly, Hendricks, Brian M, Haendel, Melissa, Geary, Carol Reynolds, Bailey, Kristina L, Hanson, Corrine K, Miele, Lucio, Horswell, Ronald, McMurry, Julie A, Porterfield, J Zachary, Vest, Michael T, Bunnell, H Timothy, Harper, Jeremy R, Price, Bradley S, Santangelo, Susan L, Rosen, Clifford J, McClay, James C, Hodder, Sally L
Published in PloS one (05.01.2023)
Published in PloS one (05.01.2023)
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Journal Article
Interpretable Clinical Genomics with a Likelihood Ratio Paradigm
Robinson, Peter N., Ravanmehr, Vida, Jacobsen, Julius O.B., Danis, Daniel, Zhang, Xingmin Aaron, Carmody, Leigh C., Gargano, Michael A., Thaxton, Courtney L., Karlebach, Guy, Reese, Justin, Holtgrewe, Manuel, Köhler, Sebastian, McMurry, Julie A., Haendel, Melissa A., Smedley, Damian
Published in American journal of human genetics (03.09.2020)
Published in American journal of human genetics (03.09.2020)
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Journal Article
Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments
Petryszak, Robert, Burdett, Tony, Fiorelli, Benedetto, Fonseca, Nuno A, Gonzalez-Porta, Mar, Hastings, Emma, Huber, Wolfgang, Jupp, Simon, Keays, Maria, Kryvych, Nataliya, McMurry, Julie, Marioni, John C, Malone, James, Megy, Karine, Rustici, Gabriella, Tang, Amy Y, Taubert, Jan, Williams, Eleanor, Mannion, Oliver, Parkinson, Helen E, Brazma, Alvis
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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Journal Article
Activation of natural regulatory T cells by IgG Fc–derived peptide “Tregitopes”
De Groot, Anne S., Moise, Leonard, McMurry, Julie A., Wambre, Erik, Van Overtvelt, Laurence, Moingeon, Philippe, Scott, David W., Martin, William
Published in Blood (15.10.2008)
Published in Blood (15.10.2008)
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Journal Article
The Ontology of Biological Attributes (OBA)—computational traits for the life sciences
Stefancsik, Ray, Balhoff, James P., Balk, Meghan A., Ball, Robyn L., Bello, Susan M., Caron, Anita R., Chesler, Elissa J., de Souza, Vinicius, Gehrke, Sarah, Haendel, Melissa, Harris, Laura W., Harris, Nomi L., Ibrahim, Arwa, Koehler, Sebastian, Matentzoglu, Nicolas, McMurry, Julie A., Mungall, Christopher J., Munoz-Torres, Monica C., Putman, Tim, Robinson, Peter, Smedley, Damian, Sollis, Elliot, Thessen, Anne E., Vasilevsky, Nicole, Walton, David O., Osumi-Sutherland, David
Published in Mammalian genome (01.09.2023)
Published in Mammalian genome (01.09.2023)
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Journal Article
Characteristics, Outcomes, and Severity Risk Factors Associated With SARS-CoV-2 Infection Among Children in the US National COVID Cohort Collaborative
Martin, Blake, DeWitt, Peter E, Russell, Seth, Anand, Adit, Bradwell, Katie R, Bremer, Carolyn, Gabriel, Davera, Girvin, Andrew T, Hajagos, Janos G, McMurry, Julie A, Neumann, Andrew J, Pfaff, Emily R, Walden, Anita, Wooldridge, Jacob T, Yoo, Yun Jae, Saltz, Joel, Gersing, Ken R, Chute, Christopher G, Haendel, Melissa A, Moffitt, Richard, Bennett, Tellen D
Published in JAMA network open (01.02.2022)
Published in JAMA network open (01.02.2022)
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Journal Article
Identifying who has long COVID in the USA: a machine learning approach using N3C data
Pfaff, Emily R, Girvin, Andrew T, Bennett, Tellen D, Bhatia, Abhishek, Brooks, Ian M, Deer, Rachel R, Dekermanjian, Jonathan P, Jolley, Sarah Elizabeth, Kahn, Michael G, Kostka, Kristin, McMurry, Julie A, Moffitt, Richard, Walden, Anita, Chute, Christopher G, Haendel, Melissa A, Bramante, Carolyn, Dorr, David, Morris, Michele, Parker, Ann M, Sidky, Hythem, Gersing, Ken, Hong, Stephanie, Niehaus, Emily
Published in The Lancet. Digital health (01.07.2022)
Published in The Lancet. Digital health (01.07.2022)
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Journal Article
Risk factors associated with post-acute sequelae of SARS-CoV-2: an N3C and NIH RECOVER study
Hill, Elaine L, Mehta, Hemalkumar B, Sharma, Suchetha, Mane, Klint, Singh, Sharad Kumar, Xie, Catherine, Cathey, Emily, Loomba, Johanna, Russell, Seth, Spratt, Heidi, DeWitt, Peter E, Ammar, Nariman, Madlock-Brown, Charisse, Brown, Donald, McMurry, Julie A, Chute, Christopher G, Haendel, Melissa A, Moffitt, Richard, Pfaff, Emily R, Bennett, Tellen D
Published in BMC public health (25.10.2023)
Published in BMC public health (25.10.2023)
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Journal Article
Synergies between centralized and federated approaches to data quality: a report from the national COVID cohort collaborative
Pfaff, Emily R, Girvin, Andrew T, Gabriel, Davera L, Kostka, Kristin, Morris, Michele, Palchuk, Matvey B, Lehmann, Harold P, Amor, Benjamin, Bissell, Mark, Bradwell, Katie R, Gold, Sigfried, Hong, Stephanie S, Loomba, Johanna, Manna, Amin, McMurry, Julie A, Niehaus, Emily, Qureshi, Nabeel, Walden, Anita, Zhang, Xiaohan Tanner, Zhu, Richard L, Moffitt, Richard A, Haendel, Melissa A, Chute, Christopher G, Adams, William G, Al-Shukri, Shaymaa, Anzalone, Alfred, Baghal, Ahmad, Bennett, Tellen D, Bernstam, Elmer V, Bissell, Mark M, Bush, Brian, Campion, Thomas R, Castro, Victor, Chang, Jack, Chaudhari, Deepa D, Chen, Wenjin, Chu, San, Cimino, James J, Crandall, Keith A, Crooks, Mark, Davies, Sara J Deakyne, DiPalazzo, John, Dorr, David, Eckrich, Dan, Eltinge, Sarah E, Fort, Daniel G, Golovko, George, Gupta, Snehil, Haendel, Melissa A, Hajagos, Janos G, Hanauer, David A, Harnett, Brett M, Horswell, Ronald, Huang, Nancy, Johnson, Steven G, Kahn, Michael, Khanipov, Kamil, Kieler, Curtis, Luzuriaga, Katherine Ruiz De, Maidlow, Sarah, Martinez, Ashley, Mathew, Jomol, McClay, James C, McMahan, Gabriel, Melancon, Brian, Meystre, Stephane, Miele, Lucio, Morizono, Hiroki, Pablo, Ray, Patel, Lav, Phuong, Jimmy, Popham, Daniel J, Pulgarin, Claudia, Santos, Carlos, Sarkar, Indra Neil, Sazo, Nancy, Setoguchi, Soko, Soby, Selvin, Surampalli, Sirisha, Suver, Christine, Vangala, Uma Maheswara Reddy, Visweswaran, Shyam, Oehsen, James von, Walters, Kellie M, Wiley, Laura, Williams, David A, Zai, Adrian
Published in Journal of the American Medical Informatics Association : JAMIA (15.03.2022)
Published in Journal of the American Medical Informatics Association : JAMIA (15.03.2022)
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Journal Article
Navigating the Phenotype Frontier: The Monarch Initiative
McMurry, Julie A, Köhler, Sebastian, Washington, Nicole L, Balhoff, James P, Borromeo, Charles, Brush, Matthew, Carbon, Seth, Conlin, Tom, Dunn, Nathan, Engelstad, Mark, Foster, Erin, Gourdine, Jean-Philippe, Jacobsen, Julius O B, Keith, Daniel, Laraway, Bryan, Xuan, Jeremy Nguyen, Shefchek, Kent, Vasilevsky, Nicole A, Yuan, Zhou, Lewis, Suzanna E, Hochheiser, Harry, Groza, Tudor, Smedley, Damian, Robinson, Peter N, Mungall, Christopher J, Haendel, Melissa A
Published in Genetics (Austin) (01.08.2016)
Published in Genetics (Austin) (01.08.2016)
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Journal Article
Sleep and circadian informatics data harmonization: a workshop report from the Sleep Research Society and Sleep Research Network
Mazzotti, Diego R, Haendel, Melissa A, McMurry, Julie A, Smith, Connor J, Buysse, Daniel J, Roenneberg, Till, Penzel, Thomas, Purcell, Shaun, Redline, Susan, Zhang, Ying, Merikangas, Kathleen R, Menetski, Joseph P, Mullington, Janet, Boudreau, Eilis
Published in Sleep (New York, N.Y.) (13.06.2022)
Published in Sleep (New York, N.Y.) (13.06.2022)
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Journal Article
An analysis and metric of reusable data licensing practices for biomedical resources
Carbon, Seth, Champieux, Robin, McMurry, Julie A, Winfree, Lilly, Wyatt, Letisha R, Haendel, Melissa A
Published in PloS one (27.03.2019)
Published in PloS one (27.03.2019)
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Journal Article
Generalisable long COVID subtypes: findings from the NIH N3C and RECOVER programmes
Reese, Justin T., Blau, Hannah, Casiraghi, Elena, Bergquist, Timothy, Loomba, Johanna J., Callahan, Tiffany J., Laraway, Bryan, Antonescu, Corneliu, Coleman, Ben, Gargano, Michael, Wilkins, Kenneth J., Cappelletti, Luca, Fontana, Tommaso, Ammar, Nariman, Antony, Blessy, Murali, T.M., Caufield, J. Harry, Karlebach, Guy, McMurry, Julie A., Williams, Andrew, Moffitt, Richard, Banerjee, Jineta, Solomonides, Anthony E., Davis, Hannah, Kostka, Kristin, Valentini, Giorgio, Sahner, David, Chute, Christopher G., Madlock-Brown, Charisse, Haendel, Melissa A., Robinson, Peter N., Spratt, Heidi, Visweswaran, Shyam, Flack, Joseph Eugene, Yoo, Yun Jae, Gabriel, Davera, Alexander, G. Caleb, Mehta, Hemalkumar B., Liu, Feifan, Miller, Robert T., Wong, Rachel, Hill, Elaine L., Thorpe, Lorna E., Divers, Jasmin
Published in EBioMedicine (01.01.2023)
Published in EBioMedicine (01.01.2023)
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