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hybridSPAdes: an algorithm for hybrid assembly of short and long reads
Antipov, Dmitry, Korobeynikov, Anton, McLean, Jeffrey S, Pevzner, Pavel A
Published in Bioinformatics (01.04.2016)
Published in Bioinformatics (01.04.2016)
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The oral microbiome: diversity, biogeography and human health
Baker, Jonathon L., Mark Welch, Jessica L., Kauffman, Kathryn M., McLean, Jeffrey S., He, Xuesong
Published in Nature reviews. Microbiology (01.02.2024)
Published in Nature reviews. Microbiology (01.02.2024)
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Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle
He, Xuesong, McLean, Jeffrey S., Edlund, Anna, Yooseph, Shibu, Hall, Adam P., Liu, Su-Yang, Dorrestein, Pieter C., Esquenazi, Eduardo, Hunter, Ryan C., Cheng, Genhong, Nelson, Karen E., Lux, Renate, Shi, Wenyuan
Published in Proceedings of the National Academy of Sciences - PNAS (06.01.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (06.01.2015)
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Episymbiotic Saccharibacteria suppresses gingival inflammation and bone loss in mice through host bacterial modulation
Chipashvili, Otari, Utter, Daniel R., Bedree, Joseph K., Ma, Yansong, Schulte, Fabian, Mascarin, Gabrielle, Alayyoubi, Yasmin, Chouhan, Deepak, Hardt, Markus, Bidlack, Felicitas, Hasturk, Hatice, He, Xuesong, McLean, Jeffrey S., Bor, Batbileg
Published in Cell host & microbe (10.11.2021)
Published in Cell host & microbe (10.11.2021)
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Precision-guided antimicrobial peptide as a targeted modulator of human microbial ecology
Guo, Lihong, Jeffrey S. McLean, Youngik Yang, Randal Eckert, Christopher W. Kaplan, Pierre Kyme, Omid Sheikh, Brian Varnum, Renate Lux, Wenyuan Shi, Xuesong He
Published in Proceedings of the National Academy of Sciences - PNAS (16.06.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (16.06.2015)
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Acquisition and Adaptation of Ultra-small Parasitic Reduced Genome Bacteria to Mammalian Hosts
McLean, Jeffrey S., Bor, Batbileg, Kerns, Kristopher A., Liu, Quanhui, To, Thao T., Solden, Lindsey, Hendrickson, Erik L., Wrighton, Kelly, Shi, Wenyuan, He, Xuesong
Published in Cell reports (Cambridge) (21.07.2020)
Published in Cell reports (Cambridge) (21.07.2020)
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Rapid evolution of decreased host susceptibility drives a stable relationship between ultrasmall parasite TM7x and its bacterial host
Bor, Batbileg, McLean, Jeffrey S., Foster, Kevin R., Cen, Lujia, To, Thao T., Serrato-Guillen, Alejandro, Dewhirst, Floyd E., Shi, Wenyuan, He, Xuesong
Published in Proceedings of the National Academy of Sciences - PNAS (27.11.2018)
Published in Proceedings of the National Academy of Sciences - PNAS (27.11.2018)
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The saccharibacterium TM7x elicits differential responses across its host range
Utter, Daniel R., He, Xuesong, Cavanaugh, Colleen M., McLean, Jeffrey S., Bor, Batbileg
Published in The ISME Journal (01.12.2020)
Published in The ISME Journal (01.12.2020)
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The social structure of microbial community involved in colonization resistance
He, Xuesong, McLean, Jeffrey S, Guo, Lihong, Lux, Renate, Shi, Wenyuan
Published in The ISME Journal (01.03.2014)
Published in The ISME Journal (01.03.2014)
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Rapamycin rejuvenates oral health in aging mice
An, Jonathan Y, Kerns, Kristopher A, Ouellette, Andrew, Robinson, Laura, Morris, H Douglas, Kaczorowski, Catherine, Park, So-Il, Mekvanich, Title, Kang, Alex, McLean, Jeffrey S, Cox, Timothy C, Kaeberlein, Matt
Published in eLife (28.04.2020)
Published in eLife (28.04.2020)
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Single Virus Genomics: A New Tool for Virus Discovery
Allen, Lisa Zeigler, Ishoey, Thomas, Novotny, Mark A., McLean, Jeffrey S., Lasken, Roger S., Williamson, Shannon J.
Published in PloS one (23.03.2011)
Published in PloS one (23.03.2011)
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Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum
McLean, Jeffrey S., Lombardo, Mary-Jane, Badger, Jonathan H., Edlund, Anna, Novotny, Mark, Yee-Greenbaum, Joyclyn, Vyahhi, Nikolay, Hall, Adam P., Yang, Youngik, Dupont, Christopher L., Ziegler, Michael G., Chitsaz, Hamidreza, Allen, Andrew E., Yooseph, Shibu, Tesler, Glenn, Pevzner, Pavel A., Friedman, Robert M., Nealson, Kenneth H., Venter, J. Craig, Lasken, Roger S.
Published in Proceedings of the National Academy of Sciences - PNAS (25.06.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (25.06.2013)
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Colonization resistance is dispensable for segregation of oral and gut microbiota
Rashidi, Armin, Koyama, Motoko, Dey, Neelendu, McLean, Jeffrey S., Hill, Geoffrey R.
Published in BMC medical genomics (22.02.2023)
Published in BMC medical genomics (22.02.2023)
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Electrically Conductive Bacterial Nanowires Produced by Shewanella oneidensis Strain MR-1 and Other Microorganisms
Gorby, Yuri A., Yanina, Svetlana, McLean, Jeffrey S., Rosso, Kevin M., Moyles, Dianne, Dohnalkova, Alice, Beveridge, Terry J., Chang, In Seop, Kim, Byung Hong, Kim, Kyung Shik, Culley, David E., Reed, Samantha B., Romine, Margaret F., Saffarini, Daad A., Hill, Eric A., Shi, Liang, Elias, Dwayne A., Kennedy, David W., Pinchuk, Grigoriy, Watanabe, Kazuya, Ishii, Shun'ichi, Logan, Bruce, Nealson, Kenneth H., Fredrickson, Jim K.
Published in Proceedings of the National Academy of Sciences - PNAS (25.07.2006)
Published in Proceedings of the National Academy of Sciences - PNAS (25.07.2006)
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Familial clustering of dysbiotic oral and fecal microbiomes in juvenile dermatomyositis
Koester, Sean T., Chow, Albert, Pepper-Tunick, Evan, Lee, Peggy, Eckert, Mary, Brenchley, Laurie, Gardner, Pamela, Song, Hyun Jung, Li, Naisi, Schiffenbauer, Adam, Volochayev, Rita, Bayat, Nastaran, McLean, Jeffrey S., Rider, Lisa G., Shenoi, Susan, Stevens, Anne M., Dey, Neelendu
Published in Scientific reports (12.07.2024)
Published in Scientific reports (12.07.2024)
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Quantification of Electron Transfer Rates to a Solid Phase Electron Acceptor through the Stages of Biofilm Formation from Single Cells to Multicellular Communities
McLean, Jeffrey S, Wanger, Greg, Gorby, Yuri A, Wainstein, Martin, McQuaid, Jeff, Ishii, Shun’ ichi, Bretschger, Orianna, Beyenal, Haluk, Nealson, Kenneth H
Published in Environmental science & technology (01.04.2010)
Published in Environmental science & technology (01.04.2010)
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Meta-omics uncover temporal regulation of pathways across oral microbiome genera during in vitro sugar metabolism
Edlund, Anna, Yang, Youngik, Yooseph, Shibu, Hall, Adam P, Nguyen, Don D, Dorrestein, Pieter C, Nelson, Karen E, He, Xuesong, Lux, Renate, Shi, Wenyuan, McLean, Jeffrey S
Published in The ISME Journal (01.12.2015)
Published in The ISME Journal (01.12.2015)
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Modified SHI medium supports growth of a disease‐state subgingival polymicrobial community in vitro
Lamont, Eleanor I., Gadkari, Archita, Kerns, Kristopher A., To, Thao T., Daubert, Diane, Kotsakis, Georgios, Bor, Batbileg, He, Xuesong, McLean, Jeffrey S.
Published in Molecular oral microbiology (01.02.2021)
Published in Molecular oral microbiology (01.02.2021)
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Phenotypic and Physiological Characterization of the Epibiotic Interaction Between TM7x and Its Basibiont Actinomyces
Bor, Batbileg, Poweleit, Nicole, Bois, Justin S, Cen, Lujia, Bedree, Joseph K, Zhou, Z. Hong, Gunsalus, Robert P, Lux, Renate, McLean, Jeffrey S, He, Xuesong, Shi, Wenyuan
Published in Microbial ecology (01.01.2016)
Published in Microbial ecology (01.01.2016)
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