Characterizing the Major Structural Variant Alleles of the Human Genome
Audano, Peter A., Sulovari, Arvis, Graves-Lindsay, Tina A., Cantsilieris, Stuart, Sorensen, Melanie, Welch, AnneMarie E., Dougherty, Max L., Nelson, Bradley J., Shah, Ankeeta, Dutcher, Susan K., Warren, Wesley C., Magrini, Vincent, McGrath, Sean D., Li, Yang I., Wilson, Richard K., Eichler, Evan E.
Published in Cell (24.01.2019)
Published in Cell (24.01.2019)
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BreakDancer: an algorithm for high-resolution mapping of genomic structural variation
Chen, Ken, Wallis, John W, McLellan, Michael D, Larson, David E, Kalicki, Joelle M, Pohl, Craig S, McGrath, Sean D, Wendl, Michael C, Zhang, Qunyuan, Locke, Devin P, Shi, Xiaoqi, Fulton, Robert S, Ley, Timothy J, Wilson, Richard K, Ding, Li, Mardis, Elaine R
Published in Nature methods (01.09.2009)
Published in Nature methods (01.09.2009)
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Transcriptome-wide identification of novel imprinted genes in neonatal mouse brain
Wang, Xu, Sun, Qi, McGrath, Sean D, Mardis, Elaine R, Soloway, Paul D, Clark, Andrew G
Published in PloS one (04.12.2008)
Published in PloS one (04.12.2008)
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Chimpanzee and human Y chromosomes are remarkably divergent in structure and gene content
Page, David C, Hughes, Jennifer F, Skaletsky, Helen, Pyntikova, Tatyana, Graves, Tina A, van Daalen, Saskia K. M, Minx, Patrick J, Fulton, Robert S, McGrath, Sean D, Locke, Devin P, Friedman, Cynthia, Trask, Barbara J, Mardis, Elaine R, Warren, Wesley C, Repping, Sjoerd, Rozen, Steve, Wilson, Richard K
Published in Nature (London) (28.01.2010)
Published in Nature (London) (28.01.2010)
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Segmental Duplications and Copy-Number Variation in the Human Genome
Sharp, Andrew J., Locke, Devin P., McGrath, Sean D., Cheng, Ze, Bailey, Jeffrey A., Vallente, Rhea U., Pertz, Lisa M., Clark, Royden A., Schwartz, Stuart, Segraves, Rick, Oseroff, Vanessa V., Albertson, Donna G., Pinkel, Daniel, Eichler, Evan E.
Published in American journal of human genetics (01.07.2005)
Published in American journal of human genetics (01.07.2005)
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Linkage Disequilibrium and Heritability of Copy-Number Polymorphisms within Duplicated Regions of the Human Genome
Locke, Devin P., Sharp, Andrew J., McCarroll, Steven A., McGrath, Sean D., Newman, Tera L., Cheng, Ze, Schwartz, Stuart, Albertson, Donna G., Pinkel, Daniel, Altshuler, David M., Eichler, Evan E.
Published in American journal of human genetics (01.08.2006)
Published in American journal of human genetics (01.08.2006)
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A Sequence Motif within Chromatin Entry Sites Directs MSL Establishment on the Drosophila X Chromosome
Alekseyenko, Artyom A., Peng, Shouyong, Larschan, Erica, Gorchakov, Andrey A., Lee, Ok-Kyung, Kharchenko, Peter, McGrath, Sean D., Wang, Charlotte I., Mardis, Elaine R., Park, Peter J., Kuroda, Mitzi I.
Published in Cell (22.08.2008)
Published in Cell (22.08.2008)
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Optimizing Cancer Genome Sequencing and Analysis
Griffith, Malachi, Miller, Christopher A., Griffith, Obi L., Krysiak, Kilannin, Skidmore, Zachary L., Ramu, Avinash, Walker, Jason R., Dang, Ha X., Trani, Lee, Larson, David E., Demeter, Ryan T., Wendl, Michael C., McMichael, Joshua F., Austin, Rachel E., Magrini, Vincent, McGrath, Sean D., Ly, Amy, Kulkarni, Shashikant, Cordes, Matthew G., Fronick, Catrina C., Fulton, Robert S., Maher, Christopher A., Ding, Li, Klco, Jeffery M., Mardis, Elaine R., Ley, Timothy J., Wilson, Richard K.
Published in Cell systems (23.09.2015)
Published in Cell systems (23.09.2015)
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Hotspots for Copy Number Variation in Chimpanzees and Humans
Perry, George H., Tchinda, Joelle, McGrath, Sean D., Zhang, Junjun, Picker, Simon R., Cáceres, Angela M., Iafrate, A. John, Tyler-Smith, Chris, Scherer, Stephen W., Eichler, Evan E., Stone, Anne C., Lee, Charles
Published in Proceedings of the National Academy of Sciences - PNAS (23.05.2006)
Published in Proceedings of the National Academy of Sciences - PNAS (23.05.2006)
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A genome-wide survey of structural variation between human and chimpanzee
Newman, Tera L, Tuzun, Eray, Morrison, V Anne, Hayden, Karen E, Ventura, Mario, McGrath, Sean D, Rocchi, Mariano, Eichler, Evan E
Published in Genome research (01.10.2005)
Published in Genome research (01.10.2005)
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Lineage-specific expansions of retroviral insertions within the genomes of African great apes but not humans and orangutans
Yohn, Chris T, Jiang, Zhaoshi, McGrath, Sean D, Hayden, Karen E, Khaitovich, Philipp, Johnson, Matthew E, Eichler, Marla Y, McPherson, John D, Zhao, Shaying, Pääbo, Svante, Eichler, Evan E
Published in PLoS biology (01.04.2005)
Published in PLoS biology (01.04.2005)
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Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing
LI DING, LEY, Timothy J, MCMICHAEL, Joshua F, WALLIS, John W, LU, Charles, DONG SHEN, HARRIS, Christopher C, DOOLING, David J, FULTON, Robert S, FULTON, Lucinda L, KEN CHEN, SCHMIDT, Heather, LARSON, David E, KALICKI-VEIZER, Joelle, MAGRINI, Vincent J, COOK, Lisa, MCGRATH, Sean D, VICKERY, Tammi L, WENDL, Michael C, HEATH, Sharon, WATSON, Mark A, LINK, Daniel C, TOMASSON, Michael H, MILLER, Christopher A, SHANNON, William D, PAYTON, Jacqueline E, KULKARNI, Shashikant, WESTERVELT, Peter, WALTER, Matthew J, GRAUBERT, Timothy A, MARDIS, Elaine R, WILSON, Richard K, DIPERSIO, John F, KOBOLDT, Daniel C, WELCH, John S, RITCHEY, Julie K, YOUNG, Margaret A, LAMPRECHT, Tamara, MCLELLAN, Michael D
Published in Nature (London) (11.01.2012)
Published in Nature (London) (11.01.2012)
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Genome remodelling in a basal-like breast cancer metastasis and xenograft
Wilson, Richard K, Ding, Li, Ellis, Matthew J, Li, Shunqiang, Larson, David E, Chen, Ken, Wallis, John W, Harris, Christopher C, McLellan, Michael D, Fulton, Robert S, Fulton, Lucinda L, Abbott, Rachel M, Hoog, Jeremy, Dooling, David J, Koboldt, Daniel C, Schmidt, Heather, Kalicki, Joelle, Zhang, Qunyuan, Chen, Lei, Lin, Ling, Wendl, Michael C, McMichael, Joshua F, Magrini, Vincent J, Cook, Lisa, McGrath, Sean D, Vickery, Tammi L, Appelbaum, Elizabeth, DeSchryver, Katherine, Davies, Sherri, Guintoli, Therese, Lin, Li, Crowder, Robert, Tao, Yu, Snider, Jacqueline E, Smith, Scott M, Dukes, Adam F, Sanderson, Gabriel E, Pohl, Craig S, Delehaunty, Kim D, Fronick, Catrina C, Pape, Kimberley A, Reed, Jerry S, Robinson, Jody S, Hodges, Jennifer S, Schierding, William, Dees, Nathan D, Shen, Dong, Locke, Devin P, Wiechert, Madeline E, Eldred, James M, Peck, Josh B, Oberkfell, Benjamin J, Lolofie, Justin T, Du, Feiyu, Hawkins, Amy E, O’Laughlin, Michelle D, Bernard, Kelly E, Cunningham, Mark, Elliott, Glendoria, Mason, Mark D, Thompson Jr, Dominic M, Ivanovich, Jennifer L, Goodfellow, Paul J, Perou, Charles M, Weinstock, George M, Aft, Rebecca, Watson, Mark, Ley, Timothy J, Mardis, Elaine R
Published in Nature (London) (15.04.2010)
Published in Nature (London) (15.04.2010)
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Long‐read whole genome sequencing reveals HOXD13 alterations in synpolydactyly
Melas, Marilena, Kautto, Esko A., Franklin, Samuel J., Mori, Mari, McBride, Kim L., Mosher, Theresa Mihalic, Pfau, Ruthann B., Hernandez‐Gonzalez, Maria Elena, McGrath, Sean D., Magrini, Vincent J., White, Peter, Samora, Julie Balch, Koboldt, Daniel C., Wilson, Richard K.
Published in Human mutation (01.02.2022)
Published in Human mutation (01.02.2022)
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Pacific Biosciences Fusion and Long Isoform Pipeline for Cancer Transcriptome–Based Resolution of Isoform Complexity
Miller, Anthony R., Wijeratne, Saranga, McGrath, Sean D., Schieffer, Kathleen M., Miller, Katherine E., Lee, Kristy, Mathew, Mariam, LaHaye, Stephanie, Fitch, James R., Kelly, Benjamin J., White, Peter, Mardis, Elaine R., Wilson, Richard K., Cottrell, Catherine E., Magrini, Vincent
Published in The Journal of molecular diagnostics : JMD (01.12.2022)
Published in The Journal of molecular diagnostics : JMD (01.12.2022)
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Gastroblastoma with a novel EWSR1‐CTBP1 fusion presenting in adolescence
Koo, Selene C., LaHaye, Stephanie, Kovari, Bence P., Schieffer, Kathleen M., Ranalli, Mark A., Aldrink, Jennifer H., Michalsky, Marc P., Colace, Susan, Miller, Katherine E., Bedrosian, Tracy A., Leraas, Kristen M., Voytovich, Kyle, Wheeler, Gregory, Brennan, Patrick, Fitch, James, Kelly, Benjamin J., McGrath, Sean D., Miller, Anthony R., White, Peter, Magrini, Vincent, Wilson, Richard K., Mardis, Elaine R., Lauwers, Gregory Y., Baker, Peter B., Cottrell, Catherine E.
Published in Genes chromosomes & cancer (01.09.2021)
Published in Genes chromosomes & cancer (01.09.2021)
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Discovery of clinically relevant fusions in pediatric cancer
LaHaye, Stephanie, Fitch, James R, Voytovich, Kyle J, Herman, Adam C, Kelly, Benjamin J, Lammi, Grant E, Arbesfeld, Jeremy A, Wijeratne, Saranga, Franklin, Samuel J, Schieffer, Kathleen M, Bir, Natalie, McGrath, Sean D, Miller, Anthony R, Wetzel, Amy, Miller, Katherine E, Bedrosian, Tracy A, Leraas, Kristen, Varga, Elizabeth A, Lee, Kristy, Gupta, Ajay, Setty, Bhuvana, Boué, Daniel R, Leonard, Jeffrey R, Finlay, Jonathan L, Abdelbaki, Mohamed S, Osorio, Diana S, Koo, Selene C, Koboldt, Daniel C, Wagner, Alex H, Eisfeld, Ann-Kathrin, Mrózek, Krzysztof, Magrini, Vincent, Cottrell, Catherine E, Mardis, Elaine R, Wilson, Richard K, White, Peter
Published in BMC genomics (04.12.2021)
Published in BMC genomics (04.12.2021)
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Sequencing a mouse acute promyelocytic leukemia genome reveals genetic events relevant for disease progression
Wartman, Lukas D, Larson, David E, Xiang, Zhifu, Ding, Li, Chen, Ken, Lin, Ling, Cahan, Patrick, Klco, Jeffery M, Welch, John S, Li, Cheng, Payton, Jacqueline E, Uy, Geoffrey L, Varghese, Nobish, Ries, Rhonda E, Hoock, Mieke, Koboldt, Daniel C, McLellan, Michael D, Schmidt, Heather, Fulton, Robert S, Abbott, Rachel M, Cook, Lisa, McGrath, Sean D, Fan, Xian, Dukes, Adam F, Vickery, Tammi, Kalicki, Joelle, Lamprecht, Tamara L, Graubert, Timothy A, Tomasson, Michael H, Mardis, Elaine R, Wilson, Richard K, Ley, Timothy J
Published in The Journal of clinical investigation (01.04.2011)
Published in The Journal of clinical investigation (01.04.2011)
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Infantile fibrosarcoma–like tumor driven by novel RBPMS-MET fusion consolidated with cabozantinib
Gupta, Ajay, Belsky, Jennifer A., Schieffer, Kathleen M., Leraas, Kristen, Varga, Elizabeth, McGrath, Sean D., Koo, Selene C., Magrini, Vincent, Wilson, Richard K., White, Peter, Mardis, Elaine R., Jatana, Kris R., Cottrell, Catherine E., Setty, Bhuvana A.
Published in Cold Spring Harbor molecular case studies (01.10.2020)
Published in Cold Spring Harbor molecular case studies (01.10.2020)
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Comprehensive discovery of noncoding RNAs in acute myeloid leukemia cell transcriptomes
Zhang, Jin, Griffith, Malachi, Miller, Christopher A., Griffith, Obi L., Spencer, David H., Walker, Jason R., Magrini, Vincent, McGrath, Sean D., Ly, Amy, Helton, Nichole M., Trissal, Maria, Link, Daniel C., Dang, Ha X., Larson, David E., Kulkarni, Shashikant, Cordes, Matthew G., Fronick, Catrina C., Fulton, Robert S., Klco, Jeffery M., Mardis, Elaine R., Ley, Timothy J., Wilson, Richard K., Maher, Christopher A.
Published in Experimental hematology (01.11.2017)
Published in Experimental hematology (01.11.2017)
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