by Srivatsan, Sanjay R, McFaline-Figueroa, José L, Ramani, Vijay, Saunders, Lauren, Cao, Junyue, Packer, Jonathan, Pliner, Hannah A, Jackson, Dana L, Daza, Riza M, Christiansen, Lena, Zhang, Fan, Steemers, Frank, Shendure, Jay, Trapnell, Cole
Published in Science (American Association for the Advancement of Science) (03.01.2020)

by Hill, Andrew J, McFaline-Figueroa, José L, Starita, Lea M, Gasperini, Molly J, Matreyek, Kenneth A, Packer, Jonathan, Jackson, Dana, Shendure, Jay, Trapnell, Cole
Published in Nature methods (01.04.2018)

by Lotfollahi, Mohammad, Klimovskaia Susmelj, Anna, De Donno, Carlo, Hetzel, Leon, Ji, Yuge, Ibarra, Ignacio L, Srivatsan, Sanjay R, Naghipourfar, Mohsen, Daza, Riza M, Martin, Beth, Shendure, Jay, McFaline‐Figueroa, Jose L, Boyeau, Pierre, Wolf, F Alexander, Yakubova, Nafissa, Günnemann, Stephan, Trapnell, Cole, Lopez‐Paz, David, Theis, Fabian J
Published in Molecular systems biology (12.06.2023)

by McFaline-Figueroa, José L, Braun, Christian J, Stanciu, Monica, Nagel, Zachary D, Mazzucato, Patrizia, Sangaraju, Dewakar, Cerniauskas, Edvinas, Barford, Kelly, Vargas, Amanda, Chen, Yimin, Tretyakova, Natalia, Lees, Jacqueline A, Hemann, Michael T, White, Forest M, Samson, Leona D
Published in Cancer research (Chicago, Ill.) (01.08.2015)

by McFaline-Figueroa, José L, Hill, Andrew J, Qiu, Xiaojie, Jackson, Dana, Shendure, Jay, Trapnell, Cole
Published in Nature genetics (01.09.2019)

by Gasperini, Molly, Hill, Andrew J., McFaline-Figueroa, José L., Martin, Beth, Kim, Seungsoo, Zhang, Melissa D., Jackson, Dana, Leith, Anh, Schreiber, Jacob, Noble, William S., Trapnell, Cole, Ahituv, Nadav, Shendure, Jay
Published in Cell (10.01.2019)

by McFaline-Figueroa, José L, Trapnell, Cole, Cuperus, Josh T
Published in Current opinion in plant biology (01.04.2020)

by Gasperini, Molly, Hill, Andrew J., McFaline-Figueroa, José L., Martin, Beth, Kim, Seungsoo, Zhang, Melissa D., Jackson, Dana, Leith, Anh, Schreiber, Jacob, Noble, William S., Trapnell, Cole, Ahituv, Nadav, Shendure, Jay
Published in Cell (07.03.2019)

by Saunders, Lauren M, Mishra, Abhishek K, Aman, Andrew J, Lewis, Victor M, Toomey, Matthew B, Packer, Jonathan S, Qiu, Xiaojie, McFaline-Figueroa, Jose L, Corbo, Joseph C, Trapnell, Cole, Parichy, David M
Published in eLife (29.05.2019)

by Pliner, Hannah A., Packer, Jonathan S., McFaline-Figueroa, José L., Cusanovich, Darren A., Daza, Riza M., Aghamirzaie, Delasa, Srivatsan, Sanjay, Qiu, Xiaojie, Jackson, Dana, Minkina, Anna, Adey, Andrew C., Steemers, Frank J., Shendure, Jay, Trapnell, Cole
Published in Molecular cell (06.09.2018)

by Jean-Baptiste, Ken, McFaline-Figueroa, José L, Alexandre, Cristina M, Dorrity, Michael W, Saunders, Lauren, Bubb, Kerry L, Trapnell, Cole, Fields, Stanley, Queitsch, Christine, Cuperus, Josh T
Published in The Plant cell (01.05.2019)

by Cruz, Nelly M, Reddy, Raghava, McFaline-Figueroa, José L, Tran, Christine, Fu, Hongxia, Freedman, Benjamin S
Published in Nature biomedical engineering (01.04.2022)

by McFaline-Figueroa, José L., Srivatsan, Sanjay, Hill, Andrew J., Gasperini, Molly, Jackson, Dana L., Saunders, Lauren, Domcke, Silvia, Regalado, Samuel G., Lazarchuck, Paul, Alvarez, Sarai, Monnat, Raymond J., Shendure, Jay, Trapnell, Cole
Published in Cell genomics (14.02.2024)

by Qiu, Xiaojie, Rahimzamani, Arman, Wang, Li, Ren, Bingcheng, Mao, Qi, Durham, Timothy, McFaline-Figueroa, José L., Saunders, Lauren, Trapnell, Cole, Kannan, Sreeram
Published in Cell systems (25.03.2020)

by Vicente, Juan Jesus, Khan, Kainat, Tillinghast, Grant, McFaline-Figueroa, José L, Sancak, Yasemin, Stella, Nephi
Published in Journal of translational medicine (10.05.2024)

by O’Connor, Samantha A, Feldman, Heather M, Arora, Sonali, Hoellerbauer, Pia, Toledo, Chad M, Corrin, Philip, Carter, Lucas, Kufeld, Megan, Bolouri, Hamid, Basom, Ryan, Delrow, Jeffrey, McFaline‐Figueroa, José L, Trapnell, Cole, Pollard, Steven M, Patel, Anoop, Paddison, Patrick J, Plaisier, Christopher L
Published in Molecular systems biology (01.06.2021)

by Kim, Hyeon-Jin, Booth, Greg, Saunders, Lauren, Srivatsan, Sanjay, McFaline-Figueroa, José L, Trapnell, Cole
Published in Nature communications (13.05.2022)

by Booth, Gregory T, Daza, Riza M, Srivatsan, Sanjay R, McFaline-Figueroa, José L, Gladden, Rula Green, Mullen, Andrew C, Furlan, Scott N, Shendure, Jay, Trapnell, Cole
Published in BMC genomics (04.12.2023)

by Mikheev, Andrei M., Mikheeva, Svetlana A., Severs, Liza J., Funk, Cory C., Huang, Lei, McFaline‐Figueroa, José L., Schwensen, Jeanette, Trapnell, Cole, Price, Nathan D., Wong, Stephen, Rostomily, Robert C.
Published in Molecular oncology (01.06.2018)

by He, Siyu, Jin, Yinuo, Nazaret, Achille, Shi, Lingting, Chen, Xueer, Rampersaud, Sham, Dhillon, Bahawar S, Valdez, Izabella, Friend, Lauren E, Fan, Joy Linyue, Park, Cameron Y, Mintz, Rachel L, Lao, Yeh-Hsing, Carrera, David, Fang, Kaylee W, Mehdi, Kaleem, Rohde, Madeline, McFaline-Figueroa, José L, Blei, David, Leong, Kam W, Rudensky, Alexander Y, Plitas, George, Azizi, Elham
Published in Nature biotechnology (21.03.2024)