Antibiotics promote intestinal growth of carbapenem-resistant Enterobacteriaceae by enriching nutrients and depleting microbial metabolites
Yip, Alexander Y. G., King, Olivia G., Omelchenko, Oleksii, Kurkimat, Sanjana, Horrocks, Victoria, Mostyn, Phoebe, Danckert, Nathan, Ghani, Rohma, Satta, Giovanni, Jauneikaite, Elita, Davies, Frances J., Clarke, Thomas B., Mullish, Benjamin H., Marchesi, Julian R., McDonald, Julie A. K.
Published in Nature communications (22.08.2023)
Published in Nature communications (22.08.2023)
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Journal Article
A bacteriocin expression platform for targeting pathogenic bacterial species
Rutter, Jack W., Dekker, Linda, Clare, Chania, Slendebroek, Zoe F., Owen, Kimberley A., McDonald, Julie A. K., Nair, Sean P., Fedorec, Alex J. H., Barnes, Chris P.
Published in Nature communications (27.07.2024)
Published in Nature communications (27.07.2024)
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Journal Article
Metabolomic Analysis of Human Fecal Microbiota: A Comparison of Feces-Derived Communities and Defined Mixed Communities
Yen, Sandi, McDonald, Julie A. K, Schroeter, Kathleen, Oliphant, Kaitlyn, Sokolenko, Stanislav, Blondeel, Eric J. M, Allen-Vercoe, Emma, Aucoin, Marc G
Published in Journal of proteome research (06.03.2015)
Published in Journal of proteome research (06.03.2015)
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Journal Article
Effects of bowel preparation on intestinal bacterial associated urine and faecal metabolites and the associated faecal microbiome
Powles, Sam T R, Gallagher, Kate I, Chong, Leo W L, Alexander, James L, Mullish, Benjamin H, Hicks, Lucy C, McDonald, Julie A K, Marchesi, Julian R, Williams, Horace R T, Orchard, Timothy R
Published in BMC gastroenterology (13.05.2022)
Published in BMC gastroenterology (13.05.2022)
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Journal Article
Human Milk from Tandem Feeding Dyads Does Not Differ in Metabolite and Metataxonomic Features When Compared to Single Nursling Dyads under Six Months of Age
Shenker, Natalie S, Perdones-Montero, Alvaro, Burke, Adam, Stickland, Sarah, McDonald, Julie A K, Cameron, Simon J S
Published in Metabolites (01.11.2022)
Published in Metabolites (01.11.2022)
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Journal Article
A Subset of Roux-en-Y Gastric Bypass Bacterial Consortium Colonizes the Gut of Nonsurgical Rats without Inducing Host-Microbe Metabolic Changes
Liu, Zhigang, Coales, Isabelle, Penney, Nicholas, McDonald, Julie A K, Phetcharaburanin, Jutarop, Seyfried, Florian, Li, Jia V
Published in mSystems (08.12.2020)
Published in mSystems (08.12.2020)
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Journal Article
Relationship between vaginal microbial dysbiosis, inflammation, and pregnancy outcomes in cervical cerclage
Kindinger, Lindsay M, MacIntyre, David A, Lee, Yun S, Marchesi, Julian R, Smith, Ann, McDonald, Julie A K, Terzidou, Vasso, Cook, Joanna R, Lees, Christoph, Israfil-Bayli, Fidan, Faiza, Yazmin, Toozs-Hobson, Philip, Slack, Mark, Cacciatore, Stefano, Holmes, Elaine, Nicholson, Jeremy K, Teoh, T G, Bennett, Phillip R
Published in Science translational medicine (03.08.2016)
Published in Science translational medicine (03.08.2016)
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Journal Article
A Two-Way Interaction between Methotrexate and the Gut Microbiota of Male Sprague–Dawley Rats
Letertre, Marine P. M, Munjoma, Nyasha, Wolfer, Kate, Pechlivanis, Alexandros, McDonald, Julie A. K, Hardwick, Rhiannon N, Cherrington, Nathan J, Coen, Muireann, Nicholson, Jeremy K, Hoyles, Lesley, Swann, Jonathan R, Wilson, Ian D
Published in Journal of proteome research (07.08.2020)
Published in Journal of proteome research (07.08.2020)
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Journal Article
Direct on-swab metabolic profiling of vaginal microbiome host interactions during pregnancy and preterm birth
Pruski, Pamela, Correia, Gonçalo D. S., Lewis, Holly V., Capuccini, Katia, Inglese, Paolo, Chan, Denise, Brown, Richard G., Kindinger, Lindsay, Lee, Yun S., Smith, Ann, Marchesi, Julian, McDonald, Julie A. K., Cameron, Simon, Alexander-Hardiman, Kate, David, Anna L., Stock, Sarah J., Norman, Jane E., Terzidou, Vasso, Teoh, T. G., Sykes, Lynne, Bennett, Phillip R., Takats, Zoltan, MacIntyre, David A.
Published in Nature communications (13.10.2021)
Published in Nature communications (13.10.2021)
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Journal Article
Ursodeoxycholic acid enriches intestinal bile salt hydrolase-expressing Bacteroidetes in cholestatic pregnancy
Ovadia, Caroline, Perdones-Montero, Alvaro, Fan, Hei Man, Mullish, Benjamin H., McDonald, Julie A. K., Papacleovoulou, Georgia, Wahlström, Annika, Ståhlman, Marcus, Tsakmaki, Anastasia, Clarke, Louise C. D., Sklavounos, Alexandros, Dixon, Peter H., Bewick, Gavin A., Walters, Julian R. F., Marschall, Hanns-Ulrich, Marchesi, Julian R., Williamson, Catherine
Published in Scientific reports (03.03.2020)
Published in Scientific reports (03.03.2020)
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Journal Article
Gut microbiota fermentation profiles of pre-digested mycoprotein (Quorn) using faecal batch cultures in vitro: a preliminary study
Cherta-Murillo, Anna, Danckert, Nathan P., Valdivia-Garcia, Maria, Chambers, Edward S., Roberts, Lauren, Miguens-Blanco, Jesus, McDonald, Julie A. K, Marchesi, Julien R., Frost, Gary S.
Published in International journal of food sciences and nutrition (01.05.2023)
Published in International journal of food sciences and nutrition (01.05.2023)
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Journal Article
Evaluation of microbial community reproducibility, stability and composition in a human distal gut chemostat model
McDonald, Julie A.K., Schroeter, Kathleen, Fuentes, Susana, Heikamp-deJong, Ineke, Khursigara, Cezar M., de Vos, Willem M., Allen-Vercoe, Emma
Published in Journal of microbiological methods (01.11.2013)
Published in Journal of microbiological methods (01.11.2013)
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Journal Article
The Impact of Probiotic Supplementation on Cognitive, Pathological and Metabolic Markers in a Transgenic Mouse Model of Alzheimer's Disease
Webberley, Thomas S, Masetti, Giulia, Bevan, Ryan J, Kerry-Smith, Joshua, Jack, Alison A, Michael, Daryn R, Thomas, Sophie, Glymenaki, Maria, Li, Jia, McDonald, Julie A K, John, Daniel, Morgan, James E, Marchesi, Julian R, Good, Mark A, Plummer, Sue F, Hughes, Timothy R
Published in Frontiers in neuroscience (24.05.2022)
Published in Frontiers in neuroscience (24.05.2022)
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Journal Article
Fecal Microbiota Transplant Mitigates Adverse Outcomes Seen in Patients Colonized With Multidrug-Resistant Organisms Undergoing Allogeneic Hematopoietic Cell Transplantation
Innes, Andrew J, Mullish, Benjamin H, Ghani, Rohma, Szydlo, Richard M, Apperley, Jane F, Olavarria, Eduardo, Palanicawandar, Renuka, Kanfer, Edward J, Milojkovic, Dragana, McDonald, Julie A K, Brannigan, Eimear T, Thursz, Mark R, Williams, Horace R T, Davies, Frances J, Marchesi, Julian R, Pavlů, Jiří
Published in Frontiers in cellular and infection microbiology (27.08.2021)
Published in Frontiers in cellular and infection microbiology (27.08.2021)
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Journal Article
Pathobionts in the tumour microbiota predict survival following resection for colorectal cancer
Alexander, James L, Posma, Joram M, Scott, Alasdair, Poynter, Liam, Mason, Sam E, Doria, M Luisa, Herendi, Lili, Roberts, Lauren, McDonald, Julie A K, Cameron, Simon, Hughes, David J, Liska, Vaclav, Susova, Simona, Soucek, Pavel, der Sluis, Verena Horneffer-van, Gomez-Romero, Maria, Lewis, Matthew R, Hoyles, Lesley, Woolston, Andrew, Cunningham, David, Darzi, Ara, Gerlinger, Marco, Goldin, Robert, Takats, Zoltan, Marchesi, Julian R, Teare, Julian, Kinross, James
Published in Microbiome (08.05.2023)
Published in Microbiome (08.05.2023)
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Journal Article
Simulating distal gut mucosal and luminal communities using packed-column biofilm reactors and an in vitro chemostat model
McDonald, Julie A.K., Fuentes, Susana, Schroeter, Kathleen, Heikamp-deJong, Ineke, Khursigara, Cezar M., de Vos, Willem M., Allen-Vercoe, Emma
Published in Journal of microbiological methods (01.01.2015)
Published in Journal of microbiological methods (01.01.2015)
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Journal Article
Metabolomic and Metataxonomic Fingerprinting of Human Milk Suggests Compositional Stability over a Natural Term of Breastfeeding to 24 Months
Shenker, Natalie S, Perdones-Montero, Alvaro, Burke, Adam, Stickland, Sarah, McDonald, Julie A K, Alexander-Hardiman, Kate, Flanagan, James, Takats, Zoltan, Cameron, Simon J S
Published in Nutrients (11.11.2020)
Published in Nutrients (11.11.2020)
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