Pulmonary Metagenomic Sequencing Suggests Missed Infections in Immunocompromised Children
Zinter, Matt S, Dvorak, Christopher C, Mayday, Madeline Y, Iwanaga, Kensho, Ly, Ngoc P, McGarry, Meghan E, Church, Gwynne D, Faricy, Lauren E, Rowan, Courtney M, Hume, Janet R, Steiner, Marie E, Crawford, Emily D, Langelier, Charles, Kalantar, Katrina, Chow, Eric D, Miller, Steve, Shimano, Kristen, Melton, Alexis, Yanik, Gregory A, Sapru, Anil, DeRisi, Joseph L
Published in Clinical Infectious Diseases (17.05.2019)
Published in Clinical Infectious Diseases (17.05.2019)
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Miniaturization and optimization of 384-well compatible RNA sequencing library preparation
Mayday, Madeline Y, Khan, Lillian M, Chow, Eric D, Zinter, Matt S, DeRisi, Joseph L
Published in PloS one (10.01.2019)
Published in PloS one (10.01.2019)
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Unbiased Metagenomic Sequencing for Pediatric Meningitis in Bangladesh Reveals Neuroinvasive Chikungunya Virus Outbreak and Other Unrealized Pathogens
Saha, Senjuti, Ramesh, Akshaya, Kalantar, Katrina, Malaker, Roly, Hasanuzzaman, Md, Khan, Lillian M, Mayday, Madeline Y, Sajib, M S I, Li, Lucy M, Langelier, Charles, Rahman, Hafizur, Crawford, Emily D, Tato, Cristina M, Islam, Maksuda, Juan, Yun-Fang, de Bourcy, Charles, Dimitrov, Boris, Wang, James, Tang, Jennifer, Sheu, Jonathan, Egger, Rebecca, De Carvalho, Tiago Rodrigues, Wilson, Michael R, Saha, Samir K, DeRisi, Joseph L
Published in mBio (17.12.2019)
Published in mBio (17.12.2019)
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The pulmonary metatranscriptome prior to pediatric HCT identifies post-HCT lung injury
Zinter, Matt S., Lindemans, Caroline A., Versluys, Birgitta A., Mayday, Madeline Y., Sunshine, Sara, Reyes, Gustavo, Sirota, Marina, Sapru, Anil, Matthay, Michael A., Kharbanda, Sandhya, Dvorak, Christopher C., Boelens, Jaap J., DeRisi, Joseph L.
Published in Blood (25.03.2021)
Published in Blood (25.03.2021)
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Multiparameter analysis of timelapse imaging reveals kinetics of megakaryocytic erythroid progenitor clonal expansion and differentiation
Scanlon, Vanessa M., Thompson, Evrett N., Lawton, Betty R., Kochugaeva, Maria, Ta, Kevinminh, Mayday, Madeline Y., Xavier-Ferrucio, Juliana, Kang, Elaine, Eskow, Nicole M., Lu, Yi-Chien, Kwon, Nayoung, Laumas, Anisha, Cenci, Matthew, Lawrence, Kalyani, Barden, Katie, Larsuel, Shannon T., Reed, Fiona E., Peña-Carmona, Gabriela, Ubbelohde, Ashley, Lee, June P., Boobalan, Shakthi, Oppong, Yvette, Anderson, Rachel, Maynard, Colby, Sahirul, Kaylie, Lajeune, Callista, Ivathraya, Varsha, Addy, Tiffany, Sanchez, Patricia, Holbrook, Colin, Van Ho, Andrew Tri, Duncan, James S., Blau, Helen M., Levchenko, Andre, Krause, Diane S.
Published in Scientific reports (28.09.2022)
Published in Scientific reports (28.09.2022)
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MRTFA: A critical protein in normal and malignant hematopoiesis and beyond
Reed, Fiona, Larsuel, Shannon T., Mayday, Madeline Y., Scanlon, Vanessa, Krause, Diane S.
Published in The Journal of biological chemistry (01.01.2021)
Published in The Journal of biological chemistry (01.01.2021)
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Pulmonary microbiome and gene expression signatures differentiate lung function in pediatric hematopoietic cell transplant candidates
Zinter, Matt S, Versluys, A Birgitta, Lindemans, Caroline A, Mayday, Madeline Y, Reyes, Gustavo, Sunshine, Sara, Chan, Marilynn, Fiorino, Elizabeth K, Cancio, Maria, Prevaes, Sabine, Sirota, Marina, Matthay, Michael A, Kharbanda, Sandhya, Dvorak, Christopher C, Boelens, Jaap J, DeRisi, Joseph L
Published in Science translational medicine (09.03.2022)
Published in Science translational medicine (09.03.2022)
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Pathobiological signatures of dysbiotic lung injury in pediatric patients undergoing stem cell transplantation
Zinter, Matt S., Dvorak, Christopher C., Mayday, Madeline Y., Reyes, Gustavo, Simon, Miriam R., Pearce, Emma M., Kim, Hanna, Shaw, Peter J., Rowan, Courtney M., Auletta, Jeffrey J., Martin, Paul L., Godder, Kamar, Duncan, Christine N., Lalefar, Nahal R., Kreml, Erin M., Hume, Janet R., Abdel-Azim, Hisham, Hurley, Caitlin, Cuvelier, Geoffrey D. E., Keating, Amy K., Qayed, Muna, Killinger, James S., Fitzgerald, Julie C., Hanna, Rabi, Mahadeo, Kris M., Quigg, Troy C., Satwani, Prakash, Castillo, Paul, Gertz, Shira J., Moore, Theodore B., Hanisch, Benjamin, Abdel-Mageed, Aly, Phelan, Rachel, Davis, Dereck B., Hudspeth, Michelle P., Yanik, Greg A., Pulsipher, Michael A., Sulaiman, Imran, Segal, Leopoldo N., Versluys, Birgitta A., Lindemans, Caroline A., Boelens, Jaap J., DeRisi, Joseph L.
Published in Nature medicine (01.07.2024)
Published in Nature medicine (01.07.2024)
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Metatranscriptomic Evaluation of Pulmonary Complications after Pediatric Hematopoietic Cell Transplantation Reveals Pathogenic Microbes Linked to Dysregulated Human Immunologic Gene Expression
Zinter, Matt S., Lindemans, Caroline A, Mayday, Madeline Y, Versluys, Birgitta, Sirota, Marina, Dvorak, Christopher C., Boelens, Jaap-Jan, DeRisi, Joseph L, Chan Zuckerberg Biohub
Published in Biology of blood and marrow transplantation (01.03.2019)
Published in Biology of blood and marrow transplantation (01.03.2019)
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Journal Article
Pulmonary microbiome and transcriptome signatures reveal distinct pathobiologic states associated with mortality in two cohorts of pediatric stem cell transplant patients
Zinter, Matt S, Dvorak, Christopher C, Mayday, Madeline Y, Reyes, Gustavo, Simon, Miriam R, Pearce, Emma M, Kim, Hanna, Shaw, Peter J, Rowan, Courtney M, Auletta, Jeffrey J, Martin, Paul L, Godder, Kamar, Duncan, Christine N, Lalefar, Nahal R, Kreml, Erin M, Hume, Janet R, Abdel-Azim, Hisham, Hurley, Caitlin, Cuvelier, Geoffrey D E, Keating, Amy K, Qayed, Muna, Killinger, James S, Fitzgerald, Julie C, Hanna, Rabi, Mahadeo, Kris M, Quigg, Troy C, Satwani, Prakash, Castillo, Paul, Gertz, Shira J, Moore, Theodore B, Hanisch, Benjamin, Abdel-Mageed, Aly, Phelan, Rachel, Davis, Dereck B, Hudspeth, Michelle P, Yanik, Greg A, Pulsipher, Michael A, Sulaiman, Imran, Segal, Leopoldo N, Versluys, Birgitta A, Lindemans, Caroline A, Boelens, Jaap J, DeRisi, Joseph L
Published in medRxiv : the preprint server for health sciences (29.11.2023)
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Published in medRxiv : the preprint server for health sciences (29.11.2023)
Journal Article
Unbiased metagenomic sequencing for pediatric meningitis in Bangladesh reveals neuroinvasive Chikungunya virus outbreak and other unrealized pathogens
Saha, Senjuti, Ramesh, Akshaya, Kalantar, Katrina L, Malaker, Roly, Hasanuzzaman, Md, Khan, Lillian M, Mayday, Madeline Y, Mohammad Saiful Islam Sajib, Li, Lucy M, Langelier, Charles, Rahman, Hafizur, Crawford, Emily Dawn, Tato, Cristina M, Islam, Maksuda, Yun-Fang, Juan, De Bourcy, Charles, Dimitrov, Boris, Wang, James, Tang, Jennifer, Sheu, Jonathan, Egger, Rebecca, Rodrigues De Carvalho, Tiago, Wilson, Michael R, Saha, Samir, Derisi, Joseph
Published in bioRxiv (15.03.2019)
Published in bioRxiv (15.03.2019)
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Pulmonary Metagenomic Sequencing Suggests Missed Infections in Immunocompromised Children
Zinter, Matt S, Dvorak, Christopher C, Mayday, Madeline Y, Iwanaga, Kensho, Ly, Ngoc P, Mcgarry, Meghan E, Church, Gwynne D, Faricy, Lauren E, Rowan, Courtney M, Hume, Janet R, Steiner, Marie E, Crawford, Emily D, Langelier, Charles, Kalantar, Katrina, Chow, Eric D, Miller, Steve, Shimano, Kristin, Melton, Alexis, Yanik, Greg A, Sapru, Anil, Derisi, Joseph L
Published in bioRxiv (29.03.2018)
Published in bioRxiv (29.03.2018)
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