The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools
Wilke, Andreas, Harrison, Travis, Wilkening, Jared, Field, Dawn, Glass, Elizabeth M, Kyrpides, Nikos, Mavrommatis, Konstantinos, Meyer, Folker
Published in BMC bioinformatics (21.06.2012)
Published in BMC bioinformatics (21.06.2012)
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Journal Article
Shallow shotgun sequencing reduces technical variation in microbiome analysis
La Reau, Alex J., Strom, Noah B., Filvaroff, Ellen, Mavrommatis, Konstantinos, Ward, Tonya L., Knights, Dan
Published in Scientific reports (11.05.2023)
Published in Scientific reports (11.05.2023)
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Journal Article
Impact of somatic mutations on response to lenalidomide in lower-risk non-del(5q) myelodysplastic syndromes patients
Santini, Valeria, Fenaux, Pierre, Giagounidis, Aristoteles, Platzbecker, Uwe, List, Alan F., Haferlach, Torsten, Zhong, Jim, Wu, Chengqing, Mavrommatis, Konstantinos, Beach, C. L., MacBeth, Kyle J., Almeida, Antonio
Published in Leukemia (01.03.2021)
Published in Leukemia (01.03.2021)
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Journal Article
Propionibacterium acnes biofilm is present in intervertebral discs of patients undergoing microdiscectomy
Capoor, Manu N, Ruzicka, Filip, Schmitz, Jonathan E, James, Garth A, Machackova, Tana, Jancalek, Radim, Smrcka, Martin, Lipina, Radim, Ahmed, Fahad S, Alamin, Todd F, Anand, Neel, Baird, John C, Bhatia, Nitin, Demir-Deviren, Sibel, Eastlack, Robert K, Fisher, Steve, Garfin, Steven R, Gogia, Jaspaul S, Gokaslan, Ziya L, Kuo, Calvin C, Lee, Yu-Po, Mavrommatis, Konstantinos, Michu, Elleni, Noskova, Hana, Raz, Assaf, Sana, Jiri, Shamie, A Nick, Stewart, Philip S, Stonemetz, Jerry L, Wang, Jeffrey C, Witham, Timothy F, Coscia, Michael F, Birkenmaier, Christof, Fischetti, Vincent A, Slaby, Ondrej
Published in PloS one (03.04.2017)
Published in PloS one (03.04.2017)
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Journal Article
Multiple Myeloma DREAM Challenge reveals epigenetic regulator PHF19 as marker of aggressive disease
Mason, Mike J., Schinke, Carolina, Eng, Christine L. P., Towfic, Fadi, Gruber, Fred, Dervan, Andrew, White, Brian S., Pratapa, Aditya, Guan, Yuanfang, Chen, Hongjie, Cui, Yi, Li, Bailiang, Yu, Thomas, Chaibub Neto, Elias, Mavrommatis, Konstantinos, Ortiz, Maria, Lyzogubov, Valeriy, Bisht, Kamlesh, Dai, Hongyue Y., Schmitz, Frank, Flynt, Erin, Dan Rozelle, Danziger, Samuel A., Ratushny, Alexander, Dalton, William S., Goldschmidt, Hartmut, Avet-Loiseau, Herve, Samur, Mehmet, Hayete, Boris, Sonneveld, Pieter, Shain, Kenneth H., Munshi, Nikhil, Auclair, Daniel, Hose, Dirk, Morgan, Gareth, Trotter, Matthew, Bassett, Douglas, Goke, Jonathan, Walker, Brian A., Thakurta, Anjan, Guinney, Justin
Published in Leukemia (01.07.2020)
Published in Leukemia (01.07.2020)
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Journal Article
Microhomology-mediated end joining drives complex rearrangements and overexpression of MYC and PVT1 in multiple myeloma
Mikulasova, Aneta, Ashby, Cody, Tytarenko, Ruslana G, Qu, Pingping, Rosenthal, Adam, Dent, Judith A, Ryan, Katie R, Bauer, Michael A, Wardell, Christopher P, Hoering, Antje, Mavrommatis, Konstantinos, Trotter, Matthew, Deshpande, Shayu, Yaccoby, Shmuel, Tian, Erming, Keats, Jonathan, Auclair, Daniel, Jackson, Graham H, Davies, Faith E, Thakurta, Anjan, Morgan, Gareth J, Walker, Brian A
Published in Haematologica (Roma) (01.04.2020)
Published in Haematologica (Roma) (01.04.2020)
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Journal Article
Prevalence of Propionibacterium acnes in Intervertebral Discs of Patients Undergoing Lumbar Microdiscectomy: A Prospective Cross-Sectional Study
Capoor, Manu N, Ruzicka, Filip, Machackova, Tana, Jancalek, Radim, Smrcka, Martin, Schmitz, Jonathan E, Hermanova, Marketa, Sana, Jiri, Michu, Elleni, Baird, John C, Ahmed, Fahad S, Maca, Karel, Lipina, Radim, Alamin, Todd F, Coscia, Michael F, Stonemetz, Jerry L, Witham, Timothy, Ehrlich, Garth D, Gokaslan, Ziya L, Mavrommatis, Konstantinos, Birkenmaier, Christof, Fischetti, Vincent A, Slaby, Ondrej
Published in PloS one (18.08.2016)
Published in PloS one (18.08.2016)
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Journal Article
Letter to the Editor concerning “Bacteria: back pain, leg pain and Modic sign: a surgical multicenter comparative study” by Fritzell, P., Welinder-Olsson, C., Jönsson, B. et al. Eur Spine J (2019)
Capoor, Manu N., McDowell, Andrew, Birkenmaier, Christof, Ahmed, Fahad S., Coscia, Erin, Raz, Assaf, Mavrommatis, Konstantinos, Fischetti, Vincent A., Slaby, Ondrej
Published in European spine journal (01.03.2020)
Published in European spine journal (01.03.2020)
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Journal Article
Importance of Propionibacterium acnes hemolytic activity in human intervertebral discs: A microbiological study
Capoor, Manu N, Ruzicka, Filip, Sandhu, Gurpreet, Rollason, Jess, Mavrommatis, Konstantinos, Ahmed, Fahad S, Schmitz, Jonathan E, Raz, Assaf, Brüggemann, Holger, Lambert, Peter A, Fischetti, Vincent A, Slaby, Ondrej
Published in PloS one (29.11.2018)
Published in PloS one (29.11.2018)
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Journal Article
Complete Genome Sequence of Desulfurococcus fermentans, a Hyperthermophilic Cellulolytic Crenarchaeon Isolated from a Freshwater Hot Spring in Kamchatka, Russia
Susanti, Dwi, Johnson, Eric F, Rodriguez, Jason R, Anderson, Iain, Perevalova, Anna A, Kyrpides, Nikos, Lucas, Susan, Han, James, Lapidus, Alla, Cheng, Jan-Fang, Goodwin, Lynne, Pitluck, Sam, Mavrommatis, Konstantinos, Peters, Lin, Land, Miriam L, Hauser, Loren, Gopalan, Venkat, Chan, Patricia P, Lowe, Todd M, Atomi, Haruyuki, Bonch-Osmolovskaya, Elizaveta A, Woyke, Tanja, Mukhopadhyay, Biswarup
Published in Journal of Bacteriology (01.10.2012)
Published in Journal of Bacteriology (01.10.2012)
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Journal Article
Whole Genome Sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, Incomplete Denitrifiers from the United States Great Basin
Murugapiran, Senthil K, Huntemann, Marcel, Wei, Chia-Lin, Han, James, Detter, John C, Han, Cliff S, Erkkila, Tracy H, Teshima, Hazuki, Chen, Amy, Kyrpides, Nikos, Mavrommatis, Konstantinos, Markowitz, Victor, Szeto, Ernest, Ivanova, Natalia, Pagani, Ioanna, Lam, Jenny, McDonald, Austin I, Dodsworth, Jeremy A, Pati, Amrita, Goodwin, Lynne, Peters, Lin, Pitluck, Sam, Woyke, Tanja, Hedlund, Brian P
Published in Genome announcements (Washington, DC) (01.01.2013)
Published in Genome announcements (Washington, DC) (01.01.2013)
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Journal Article
Insights into Secondary Metabolism from a Global Analysis of Prokaryotic Biosynthetic Gene Clusters
Cimermancic, Peter, Medema, Marnix H., Claesen, Jan, Kurita, Kenji, Wieland Brown, Laura C., Mavrommatis, Konstantinos, Pati, Amrita, Godfrey, Paul A., Koehrsen, Michael, Clardy, Jon, Birren, Bruce W., Takano, Eriko, Sali, Andrej, Linington, Roger G., Fischbach, Michael A.
Published in Cell (17.07.2014)
Published in Cell (17.07.2014)
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Journal Article
Identification of novel mutational drivers reveals oncogene dependencies in multiple myeloma
Walker, Brian A., Mavrommatis, Konstantinos, Wardell, Christopher P., Ashby, T. Cody, Bauer, Michael, Davies, Faith E., Rosenthal, Adam, Wang, Hongwei, Qu, Pingping, Hoering, Antje, Samur, Mehmet, Towfic, Fadi, Ortiz, Maria, Flynt, Erin, Yu, Zhinuan, Yang, Zhihong, Rozelle, Dan, Obenauer, John, Trotter, Matthew, Auclair, Daniel, Keats, Jonathan, Bolli, Niccolo, Fulciniti, Mariateresa, Szalat, Raphael, Moreau, Philippe, Durie, Brian, Stewart, A. Keith, Goldschmidt, Hartmut, Raab, Marc S., Einsele, Hermann, Sonneveld, Pieter, San Miguel, Jesus, Lonial, Sagar, Jackson, Graham H., Anderson, Kenneth C., Avet-Loiseau, Herve, Munshi, Nikhil, Thakurta, Anjan, Morgan, Gareth J.
Published in Blood (09.08.2018)
Published in Blood (09.08.2018)
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Journal Article
A high-risk, Double-Hit, group of newly diagnosed myeloma identified by genomic analysis
Walker, Brian A., Mavrommatis, Konstantinos, Wardell, Christopher P., Ashby, T. Cody, Bauer, Michael, Davies, Faith, Rosenthal, Adam, Wang, Hongwei, Qu, Pingping, Hoering, Antje, Samur, Mehmet, Towfic, Fadi, Ortiz, Maria, Flynt, Erin, Yu, Zhinuan, Yang, Zhihong, Rozelle, Dan, Obenauer, John, Trotter, Matthew, Auclair, Daniel, Keats, Jonathan, Bolli, Niccolo, Fulciniti, Mariateresa, Szalat, Raphael, Moreau, Phillipe, Durie, Brian, Stewart, A. Keith, Goldschmidt, Hartmut, Raab, Marc S., Einsele, Hermann, Sonneveld, Pieter, San Miguel, Jesus, Lonial, Sagar, Jackson, Graham H., Anderson, Kenneth C., Avet-Loiseau, Herve, Munshi, Nikhil, Thakurta, Anjan, Morgan, Gareth
Published in Leukemia (01.01.2019)
Published in Leukemia (01.01.2019)
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Journal Article
Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes
Hultman, Jenni, Waldrop, Mark P., Mackelprang, Rachel, David, Maude M., McFarland, Jack, Blazewicz, Steven J., Harden, Jennifer, Turetsky, Merritt R., McGuire, A. David, Shah, Manesh B., VerBerkmoes, Nathan C., Lee, Lang Ho, Mavrommatis, Kostas, Jansson, Janet K.
Published in Nature (London) (14.05.2015)
Published in Nature (London) (14.05.2015)
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Journal Article
Whole-genome analysis identifies novel drivers and high-risk double-hit events in relapsed/refractory myeloma
Ansari-Pour, Naser, Samur, Mehmet, Flynt, Erin, Gooding, Sarah, Towfic, Fadi, Stong, Nicholas, Estevez, Maria Ortiz, Mavrommatis, Konstantinos, Walker, Brian, Morgan, Gareth, Munshi, Nikhil, Avet-Loiseau, Herve, Thakurta, Anjan
Published in Blood (09.02.2023)
Published in Blood (09.02.2023)
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Journal Article
Discovery and Preclinical Characterization of CC-95251, an Anti-SIRPα Antibody That Enhances Macrophage-Mediated Phagocytosis of Non-Hodgkin Lymphoma (NHL) Cells When Combined with Rituximab
Chan, Henry, Trout, Christina, Mikolon, David, Adams, Preston, Guzman, Roberto, Fenalti, Gustavo, Mavrommatis, Konstantinos, Abbasian, Mahan, Dearth, Lawrence, Fox, Brian, Sivakumar, Pallavur, Hariharan, Kandasamy
Published in Blood (23.11.2021)
Published in Blood (23.11.2021)
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Journal Article
Calcium sensing receptor expression is downregulated in gastroenteropancreatic neuroendocrine tumours via epigenetic mechanisms
English, Katherine A, Goldsworthy, Michelle, Willis, Brittannie, Kooblall, Kreepa G, Birla, Shweta, Selberherr, Andreas, Stevenson, Mark, Shariq, Omair A, Oberg, Ann L, Wang, Tony, Carmichael, James, Mavrommatis, Konstantinos, Escoubet, Laure, Thakker, Rajesh V, Howles, Sarah A, Lines, Kate E
Published in International journal of cancer (23.11.2024)
Published in International journal of cancer (23.11.2024)
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