Systematic Discovery of Xist RNA Binding Proteins
Chu, Ci, Zhang, Qiangfeng Cliff, da Rocha, Simão Teixeira, Flynn, Ryan A., Bharadwaj, Maheetha, Calabrese, J. Mauro, Magnuson, Terry, Heard, Edith, Chang, Howard Y.
Published in Cell (09.04.2015)
Published in Cell (09.04.2015)
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Journal Article
De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data
Grün, Dominic, Muraro, Mauro J., Boisset, Jean-Charles, Wiebrands, Kay, Lyubimova, Anna, Dharmadhikari, Gitanjali, van den Born, Maaike, van Es, Johan, Jansen, Erik, Clevers, Hans, de Koning, Eelco J.P., van Oudenaarden, Alexander
Published in Cell stem cell (04.08.2016)
Published in Cell stem cell (04.08.2016)
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Journal Article
Phase separation drives X-chromosome inactivation
Cerase, Andrea, Calabrese, J Mauro, Tartaglia, Gian Gaetano
Published in Nature structural & molecular biology (01.03.2022)
Published in Nature structural & molecular biology (01.03.2022)
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Journal Article
Mapping the physical network of cellular interactions
Boisset, Jean-Charles, Vivié, Judith, Grün, Dominic, Muraro, Mauro J, Lyubimova, Anna, van Oudenaarden, Alexander
Published in Nature methods (01.07.2018)
Published in Nature methods (01.07.2018)
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Journal Article
A Single-Cell Transcriptome Atlas of the Human Pancreas
Muraro, Mauro J., Dharmadhikari, Gitanjali, Grün, Dominic, Groen, Nathalie, Dielen, Tim, Jansen, Erik, van Gurp, Leon, Engelse, Marten A., Carlotti, Francoise, de Koning, Eelco J.P., van Oudenaarden, Alexander
Published in Cell systems (26.10.2016)
Published in Cell systems (26.10.2016)
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Journal Article
Topoisomerases facilitate transcription of long genes linked to autism
KING, Ian F, YANDAVA, Chandri N, CHAMBERLAIN, Stormy J, PHILPOT, Benjamin D, ZYLKA, Mark J, MABB, Angela M, HSIAO, Jack S, HUANG, Hsien-Sung, PEARSON, Brandon L, MAURO CALABRESE, J, STARMER, Joshua, PARKER, Joel S, MAGNUSON, Terry
Published in Nature (London) (05.09.2013)
Published in Nature (London) (05.09.2013)
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Journal Article
Single-cell analysis uncovers that metabolic reprogramming by ErbB2 signaling is essential for cardiomyocyte proliferation in the regenerating heart
Honkoop, Hessel, de Bakker, Dennis Em, Aharonov, Alla, Kruse, Fabian, Shakked, Avraham, Nguyen, Phong D, de Heus, Cecilia, Garric, Laurence, Muraro, Mauro J, Shoffner, Adam, Tessadori, Federico, Peterson, Joshua Craiger, Noort, Wendy, Bertozzi, Alberto, Weidinger, Gilbert, Posthuma, George, Grün, Dominic, van der Laarse, Willem J, Klumperman, Judith, Jaspers, Richard T, Poss, Kenneth D, van Oudenaarden, Alexander, Tzahor, Eldad, Bakkers, Jeroen
Published in eLife (23.12.2019)
Published in eLife (23.12.2019)
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Journal Article
Detection of RNA–Protein Interactions in Living Cells with SHAPE
Smola, Matthew J, Calabrese, J. Mauro, Weeks, Kevin M
Published in Biochemistry (Easton) (24.11.2015)
Published in Biochemistry (Easton) (24.11.2015)
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Journal Article
Site-Specific Silencing of Regulatory Elements as a Mechanism of X Inactivation
Calabrese, J. Mauro, Sun, Wei, Song, Lingyun, Mugford, Joshua W., Williams, Lucy, Yee, Della, Starmer, Joshua, Mieczkowski, Piotr, Crawford, Gregory E., Magnuson, Terry
Published in Cell (21.11.2012)
Published in Cell (21.11.2012)
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Journal Article
Analysis of RNA-protein networks with RNP-MaP defines functional hubs on RNA
Weidmann, Chase A, Mustoe, Anthony M, Jariwala, Parth B, Calabrese, J Mauro, Weeks, Kevin M
Published in Nature biotechnology (01.03.2021)
Published in Nature biotechnology (01.03.2021)
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Journal Article
Functional classification of long non-coding RNAs by k-mer content
Kirk, Jessime M, Kim, Susan O, Inoue, Kaoru, Smola, Matthew J, Lee, David M, Schertzer, Megan D, Wooten, Joshua S, Baker, Allison R, Sprague, Daniel, Collins, David W, Horning, Christopher R, Wang, Shuo, Chen, Qidi, Weeks, Kevin M, Mucha, Peter J, Calabrese, J Mauro
Published in Nature genetics (01.10.2018)
Published in Nature genetics (01.10.2018)
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Journal Article
Bosutinib Versus Imatinib for Newly Diagnosed Chronic Myeloid Leukemia: Results From the Randomized BFORE Trial
Cortes, Jorge E, Gambacorti-Passerini, Carlo, Deininger, Michael W, Mauro, Michael J, Chuah, Charles, Kim, Dong-Wook, Dyagil, Irina, Glushko, Nataliia, Milojkovic, Dragana, le Coutre, Philipp, Garcia-Gutierrez, Valentin, Reilly, Laurence, Jeynes-Ellis, Allison, Leip, Eric, Bardy-Bouxin, Nathalie, Hochhaus, Andreas, Brümmendorf, Tim H
Published in Journal of clinical oncology (20.01.2018)
Published in Journal of clinical oncology (20.01.2018)
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Journal Article
Oral Mucosal Organoids as a Potential Platform for Personalized Cancer Therapy
Driehuis, Else, Kolders, Sigrid, Spelier, Sacha, Lõhmussaar, Kadi, Willems, Stefan M, Devriese, Lot A, de Bree, Remco, de Ruiter, Emma J, Korving, Jeroen, Begthel, Harry, van Es, Johan H, Geurts, Veerle, He, Gui-Wei, van Jaarsveld, Richard H, Oka, Rurika, Muraro, Mauro J, Vivié, Judith, Zandvliet, Maurice M J M, Hendrickx, Antoni P A, Iakobachvili, Nino, Sridevi, Priya, Kranenburg, Onno, van Boxtel, Ruben, Kops, Geert J P L, Tuveson, David A, Peters, Peter J, van Oudenaarden, Alexander, Clevers, Hans
Published in Cancer discovery (01.07.2019)
Published in Cancer discovery (01.07.2019)
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Journal Article
Identity and dynamics of mammary stem cells during branching morphogenesis
Scheele, Colinda L G J, Hannezo, Edouard, Muraro, Mauro J, Zomer, Anoek, Langedijk, Nathalia S M, van Oudenaarden, Alexander, Simons, Benjamin D, van Rheenen, Jacco
Published in Nature (London) (16.02.2017)
Published in Nature (London) (16.02.2017)
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Journal Article
Long-term multiple color imaging of live cells using quantum dot bioconjugates
Simon, Sanford M, Jaiswal, Jyoti K, Mattoussi, Hedi, Mauro, J. Matthew
Published in Nature biotechnology (01.01.2003)
Published in Nature biotechnology (01.01.2003)
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Journal Article
A phase 3, open-label, randomized study of asciminib, a STAMP inhibitor, vs bosutinib in CML after 2 or more prior TKIs
Réa, Delphine, Mauro, Michael J., Boquimpani, Carla, Minami, Yosuke, Lomaia, Elza, Voloshin, Sergey, Turkina, Anna, Kim, Dong-Wook, Apperley, Jane F., Abdo, Andre, Fogliatto, Laura Maria, Kim, Dennis Dong Hwan, le Coutre, Philipp, Saussele, Susanne, Annunziata, Mario, Hughes, Timothy P., Chaudhri, Naeem, Sasaki, Koji, Chee, Lynette, García-Gutiérrez, Valentin, Cortes, Jorge E., Aimone, Paola, Allepuz, Alex, Quenet, Sara, Bédoucha, Véronique, Hochhaus, Andreas
Published in Blood (25.11.2021)
Published in Blood (25.11.2021)
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Journal Article
AMITE: A Novel Polynomial Expansion for Analyzing Neural Network Nonlinearities
Sanchirico, Mauro J., Jiao, Xun, Nataraj, C.
Published in IEEE transaction on neural networks and learning systems (01.09.2023)
Published in IEEE transaction on neural networks and learning systems (01.09.2023)
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Journal Article
lncRNA-Induced Spread of Polycomb Controlled by Genome Architecture, RNA Abundance, and CpG Island DNA
Schertzer, Megan D., Braceros, Keean C.A., Starmer, Joshua, Cherney, Rachel E., Lee, David M., Salazar, Gabriela, Justice, Megan, Bischoff, Steven R., Cowley, Dale O., Ariel, Pablo, Zylka, Mark J., Dowen, Jill M., Magnuson, Terry, Calabrese, J. Mauro
Published in Molecular cell (08.08.2019)
Published in Molecular cell (08.08.2019)
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Journal Article
Divergent Transcription from Active Promoters
Seila, Amy C, Calabrese, J. Mauro, Levine, Stuart S, Yeo, Gene W, Rahl, Peter B, Flynn, Ryan A, Young, Richard A, Sharp, Phillip A
Published in Science (American Association for the Advancement of Science) (19.12.2008)
Published in Science (American Association for the Advancement of Science) (19.12.2008)
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