BSim: an agent-based tool for modeling bacterial populations in systems and synthetic biology
Gorochowski, Thomas E, Matyjaszkiewicz, Antoni, Todd, Thomas, Oak, Neeraj, Kowalska, Kira, Reid, Stephen, Tsaneva-Atanasova, Krasimira T, Savery, Nigel J, Grierson, Claire S, di Bernardo, Mario
Published in PloS one (24.08.2012)
Published in PloS one (24.08.2012)
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Journal Article
Subconductance Gating and Voltage Sensitivity of Sarcoplasmic Reticulum K+ Channels: A Modeling Approach
Matyjaszkiewicz, Antoni, Venturi, Elisa, O’Brien, Fiona, Iida, Tsunaki, Nishi, Miyuki, Takeshima, Hiroshi, Tsaneva-Atanasova, Krasimira, Sitsapesan, Rebecca
Published in Biophysical journal (21.07.2015)
Published in Biophysical journal (21.07.2015)
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Journal Article
Micro-scale interactions between Arabidopsis root hairs and soil particles influence soil erosion
De Baets, Sarah, Denbigh, Thomas D. G., Smyth, Kevin M., Eldridge, Bethany M., Weldon, Laura, Higgins, Benjamin, Matyjaszkiewicz, Antoni, Meersmans, Jeroen, Larson, Emily R., Chenchiah, Isaac V., Liverpool, Tanniemola B., Quine, Timothy A., Grierson, Claire S.
Published in Communications biology (03.04.2020)
Published in Communications biology (03.04.2020)
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Journal Article
Web Resource
TRIC-B channels display labile gating: evidence from the TRIC-A knockout mouse model
Venturi, Elisa, Matyjaszkiewicz, Antoni, Pitt, Samantha J., Tsaneva-Atanasova, Krasimira, Nishi, Miyuki, Yamazaki, Daiju, Takeshima, Hiroshi, Sitsapesan, Rebecca
Published in Pflügers Archiv (01.08.2013)
Published in Pflügers Archiv (01.08.2013)
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Journal Article
Toward Engineering Biosystems With Emergent Collective Functions
Gorochowski, Thomas E, Hauert, Sabine, Kreft, Jan-Ulrich, Marucci, Lucia, Stillman, Namid R, Tang, T-Y Dora, Bandiera, Lucia, Bartoli, Vittorio, Dixon, Daniel O R, Fedorec, Alex J H, Fellermann, Harold, Fletcher, Alexander G, Foster, Tim, Giuggioli, Luca, Matyjaszkiewicz, Antoni, McCormick, Scott, Montes Olivas, Sandra, Naylor, Jonathan, Rubio Denniss, Ana, Ward, Daniel
Published in Frontiers in bioengineering and biotechnology (26.06.2020)
Published in Frontiers in bioengineering and biotechnology (26.06.2020)
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Journal Article
An Orthogonal Multi-input Integration System to Control Gene Expression in Escherichia coli
Annunziata, Fabio, Matyjaszkiewicz, Antoni, Fiore, Gianfranco, Grierson, Claire S, Marucci, Lucia, di Bernardo, Mario, Savery, Nigel J
Published in ACS synthetic biology (20.10.2017)
Published in ACS synthetic biology (20.10.2017)
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Journal Article
BSim 2.0: An Advanced Agent-Based Cell Simulator
Matyjaszkiewicz, Antoni, Fiore, Gianfranco, Annunziata, Fabio, Grierson, Claire S, Savery, Nigel J, Marucci, Lucia, di Bernardo, Mario
Published in ACS synthetic biology (20.10.2017)
Published in ACS synthetic biology (20.10.2017)
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Journal Article
In-Silico Analysis and Implementation of a Multicellular Feedback Control Strategy in a Synthetic Bacterial Consortium
Fiore, Gianfranco, Matyjaszkiewicz, Antoni, Annunziata, Fabio, Grierson, Claire, Savery, Nigel J, Marucci, Lucia, di Bernardo, Mario
Published in ACS synthetic biology (17.03.2017)
Published in ACS synthetic biology (17.03.2017)
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Journal Article
Signal integration and decision making in Escherichia coli: A biological implementation of negative feedback control systems
Annunziata, Fabio, Fiore, Gianfranco, Matyjaszkiewicz, Antoni, Grierson, Claire, Marucci, Lucia, di Bernardo, Mario, Savery, Nigel J.
Published in New biotechnology (25.07.2016)
Published in New biotechnology (25.07.2016)
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Journal Article
H+ Inhibits TRIC-B Channels Derived from Mouse TRIC-A Knockout Tissue
O'Brien, Fiona, Venturi, Elisa, Galfrè, Elena, Matyjaszkiewicz, Antoni, Yamazaki, Daiju, Nishi, Miyuki, Takeshima, Hiroshi, Sitsapesan, Rebecca
Published in Biophysical journal (28.01.2014)
Published in Biophysical journal (28.01.2014)
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Journal Article
Voltage-Dependent Stochastic Gating Models of TRIC-B Channels
Matyjaszkiewicz, Antoni, Venturi, Elisa, Yamazaki, Daiju, Nishi, Miyuki, Tsaneva-Atanasova, Krasimira, Takeshima, Hiroshi, Sitsapesan, Rebecca
Published in Biophysical journal (29.01.2013)
Published in Biophysical journal (29.01.2013)
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Journal Article
Design of a multicellular feedback control strategy in a synthetic bacterial consortium
Fiore, Gianfranco, Matyjaszkiewicz, Antoni, Annunziata, Fabio, Grierson, Claire, Savery, Nigel J., Marucci, Lucia, di Bernardo, Mario
Published in 2016 IEEE 55th Conference on Decision and Control (CDC) (01.12.2016)
Published in 2016 IEEE 55th Conference on Decision and Control (CDC) (01.12.2016)
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