by Grubaugh, Nathan D, Gangavarapu, Karthik, Quick, Joshua, Matteson, Nathaniel L, De Jesus, Jaqueline Goes, Main, Bradley J, Tan, Amanda L, Paul, Lauren M, Brackney, Doug E, Grewal, Saran, Gurfield, Nikos, Van Rompay, Koen K A, Isern, Sharon, Michael, Scott F, Coffey, Lark L, Loman, Nicholas J, Andersen, Kristian G
Published in Genome Biology (08.01.2019)

by Gangavarapu, Karthik, Latif, Alaa Abdel, Mullen, Julia L., Alkuzweny, Manar, Hufbauer, Emory, Tsueng, Ginger, Haag, Emily, Zeller, Mark, Aceves, Christine M., Zaiets, Karina, Cano, Marco, Zhou, Xinghua, Qian, Zhongchao, Sattler, Rachel, Matteson, Nathaniel L., Levy, Joshua I., Lee, Raphael T. C., Freitas, Lucas, Maurer-Stroh, Sebastian, Suchard, Marc A., Wu, Chunlei, Su, Andrew I., Andersen, Kristian G., Hughes, Laura D.
Published in Nature methods (01.04.2023)

by Dellicour, Simon, Lequime, Sebastian, Vrancken, Bram, Gill, Mandev S., Bastide, Paul, Gangavarapu, Karthik, Matteson, Nathaniel L., Tan, Yi, du Plessis, Louis, Fisher, Alexander A., Nelson, Martha I., Gilbert, Marius, Suchard, Marc A., Andersen, Kristian G., Grubaugh, Nathan D., Pybus, Oliver G., Lemey, Philippe
Published in Nature communications (06.11.2020)

by Pekar, Jonathan E, Magee, Andrew, Parker, Edyth, Moshiri, Niema, Izhikevich, Katherine, Havens, Jennifer L, Gangavarapu, Karthik, Malpica Serrano, Lorena Mariana, Crits-Christoph, Alexander, Matteson, Nathaniel L, Zeller, Mark, Levy, Joshua I, Wang, Jade C, Hughes, Scott, Lee, Jungmin, Park, Heedo, Park, Man-Seong, Ching Zi Yan, Katherine, Lin, Raymond Tzer Pin, Mat Isa, Mohd Noor, Noor, Yusuf Muhammad, Vasylyeva, Tetyana I, Garry, Robert F, Holmes, Edward C, Rambaut, Andrew, Suchard, Marc A, Andersen, Kristian G, Worobey, Michael, Wertheim, Joel O
Published in Science (American Association for the Advancement of Science) (26.08.2022)

by Matteson, Nathaniel L., Barry, Michael A., Reddy, Vijay S.
Published in Virology (New York, N.Y.) (01.03.2018)

by Zeller, Mark, Gangavarapu, Karthik, Anderson, Catelyn, Smither, Allison R., Vanchiere, John A., Rose, Rebecca, Snyder, Daniel J., Dudas, Gytis, Watts, Alexander, Matteson, Nathaniel L., Robles-Sikisaka, Refugio, Marshall, Maximilian, Feehan, Amy K., Sabino-Santos, Gilberto, Bell-Kareem, Antoinette R., Hughes, Laura D., Alkuzweny, Manar, Snarski, Patricia, Garcia-Diaz, Julia, Scott, Rona S., Melnik, Lilia I., Klitting, Raphaëlle, McGraw, Michelle, Belda-Ferre, Pedro, DeHoff, Peter, Sathe, Shashank, Marotz, Clarisse, Grubaugh, Nathan D., Nolan, David J., Drouin, Arnaud C., Genemaras, Kaylynn J., Chao, Karissa, Topol, Sarah, Spencer, Emily, Nicholson, Laura, Aigner, Stefan, Yeo, Gene W., Farnaes, Lauge, Hobbs, Charlotte A., Laurent, Louise C., Knight, Rob, Hodcroft, Emma B., Khan, Kamran, Fusco, Dahlene N., Cooper, Vaughn S., Lemey, Phillipe, Gardner, Lauren, Lamers, Susanna L., Kamil, Jeremy P., Garry, Robert F., Suchard, Marc A., Andersen, Kristian G.
Published in Cell (16.09.2021)

by Parker, Edyth, Anderson, Catelyn, Zeller, Mark, Tibi, Ahmad, Havens, Jennifer L., Laroche, Geneviève, Benlarbi, Mehdi, Ariana, Ardeshir, Robles-Sikisaka, Refugio, Latif, Alaa Abdel, Watts, Alexander, Awidi, Abdalla, Jaradat, Saied A., Gangavarapu, Karthik, Ramesh, Karthik, Kurzban, Ezra, Matteson, Nathaniel L., Han, Alvin X., Hughes, Laura D., McGraw, Michelle, Spencer, Emily, Nicholson, Laura, Khan, Kamran, Suchard, Marc A., Wertheim, Joel O., Wohl, Shirlee, Côté, Marceline, Abdelnour, Amid, Andersen, Kristian G., Abu-Dayyeh, Issa
Published in Nature communications (15.08.2022)

by Cantrell, Kalen, Fedarko, Marcus W, Rahman, Gibraan, McDonald, Daniel, Yang, Yimeng, Zaw, Thant, Gonzalez, Antonio, Janssen, Stefan, Estaki, Mehrbod, Haiminen, Niina, Beck, Kristen L, Zhu, Qiyun, Sayyari, Erfan, Morton, James T, Armstrong, George, Tripathi, Anupriya, Gauglitz, Julia M, Marotz, Clarisse, Matteson, Nathaniel L, Martino, Cameron, Sanders, Jon G, Carrieri, Anna Paola, Song, Se Jin, Swafford, Austin D, Dorrestein, Pieter C, Andersen, Kristian G, Parida, Laxmi, Kim, Ho-Cheol, Vázquez-Baeza, Yoshiki, Knight, Rob
Published in mSystems (16.03.2021)

by Cantrell, Kalen, Fedarko, Marcus W., Rahman, Gibraan, McDonald, Daniel, Yang, Yimeng, Zaw, Thant, Gonzalez, Antonio, Janssen, Stefan, Estaki, Mehrbod, Haiminen, Niina, Beck, Kristen L., Zhu, Qiyun, Sayyari, Erfan, Morton, James T., Armstrong, George, Tripathi, Anupriya, Gauglitz, Julia M., Marotz, Clarisse, Matteson, Nathaniel L., Martino, Cameron, Sanders, Jon G., Carrieri, Anna Paola, Song, Se Jin, Swafford, Austin D., Dorrestein, Pieter C., Andersen, Kristian G., Parida, Laxmi, Kim, Ho-Cheol, Vázquez-Baeza, Yoshiki, Knight, Rob
Published in mSystems (01.04.2021)

by Karthikeyan, Smruthi, Levy, Joshua I., De Hoff, Peter, Humphrey, Greg, Birmingham, Amanda, Jepsen, Kristen, Farmer, Sawyer, Tubb, Helena M., Valles, Tommy, Tribelhorn, Caitlin E., Tsai, Rebecca, Aigner, Stefan, Moshiri, Niema, Henson, Benjamin, Mark, Adam M., Hakim, Abbas, Baer, Nathan A., Barber, Tom, Belda-Ferre, Pedro, Chacón, Marisol, Cresini, Evelyn S., Eisner, Emily R., Lastrella, Alma L., Lawrence, Elijah S., Marotz, Clarisse A., Ngo, Toan T., Ostrander, Tyler, Plascencia, Ashley, Salido, Rodolfo A., Seaver, Phoebe, Smoot, Elizabeth W., McDonald, Daniel, Neuhard, Robert M., Scioscia, Angela L., Satterlund, Alysson M., Simmons, Elizabeth H., Abelman, Dismas B., Brenner, David, Buckley, Anne, Gattas, Jeffrey, Gonias, Steven L., Hale, Matt, Ikeda, Lydia, Jhaveri, Hemlata, Kremer, Brendan, McLawhon, Ronald W., Ouillet, Pierre, Park, Daniel, Pradenas, Allorah, Riggs, Lindsay, Sanders, Alison, Sollenberger, Bradley, White, Benjamin, Winbush, Terri, Aceves, Christine M., Anderson, Catelyn, Gangavarapu, Karthik, Hufbauer, Emory, Kurzban, Ezra, Lee, Justin, Matteson, Nathaniel L., Parker, Edyth, Perkins, Sarah A., Ramesh, Karthik S., Schwab, Madison A., Wohl, Shirlee, Nicholson, Laura, McHardy, Ian H., Hobbs, Charlotte A., Bakhtar, Omid, Mendoza, Art, Becker, David, Cirulli, Elizabeth T., Isaksson, Magnus, Schiabor Barrett, Kelly M., Washington, Nicole L., Malone, John D., Schafer, Ashleigh Murphy, Fielding-Miller, Rebecca, Garfein, Richard S., Gaines, Tommi, Anderson, Cheryl, Martin, Natasha K., Schooley, Robert, Austin, Brett, Kingsmore, Stephen F., Lee, William, Shah, Seema, McDonald, Eric, Yu, Alexander T., Zeller, Mark, Fisch, Kathleen M., Longhurst, Christopher, Maysent, Patty, Pride, David, Khosla, Pradeep K., Laurent, Louise C., Yeo, Gene W., Andersen, Kristian G., Knight, Rob
Published in Nature (London) (01.09.2022)

by Grubaugh, Nathan D., Saraf, Sharada, Gangavarapu, Karthik, Watts, Alexander, Tan, Amanda L., Oidtman, Rachel J., Ladner, Jason T., Oliveira, Glenn, Matteson, Nathaniel L., Kraemer, Moritz U.G., Vogels, Chantal B.F., Hentoff, Aaron, Bhatia, Deepit, Stanek, Danielle, Scott, Blake, Landis, Vanessa, Stryker, Ian, Cone, Marshall R., Kopp, Edgar W., Cannons, Andrew C., Heberlein-Larson, Lea, White, Stephen, Gillis, Leah D., Ricciardi, Michael J., Kwal, Jaclyn, Lichtenberger, Paola K., Magnani, Diogo M., Watkins, David I., Palacios, Gustavo, Hamer, Davidson H., Gardner, Lauren M., Perkins, T. Alex, Baele, Guy, Khan, Kamran, Morrison, Andrea, Isern, Sharon, Michael, Scott F., Andersen, Kristian G.
Published in Cell (22.08.2019)

by Zeller, Mark, Gangavarapu, Karthik, Anderson, Catelyn, Smither, Allison R, Vanchiere, John A, Rose, Rebecca, Snyder, Daniel J, Dudas, Gytis, Watts, Alexander, Matteson, Nathaniel L, Robles-Sikisaka, Refugio, Marshall, Maximilian, Feehan, Amy K, Sabino-Santos, Jr, Gilberto, Bell-Kareem, Antoinette R, Hughes, Laura D, Alkuzweny, Manar, Snarski, Patricia, Garcia-Diaz, Julia, Scott, Rona S, Melnik, Lilia I, Klitting, Raphaälle, McGraw, Michelle, Belda-Ferre, Pedro, DeHoff, Peter, Sathe, Shashank, Marotz, Clarisse, Grubaugh, Nathan, Nolan, David J, Drouin, Arnaud C, Genemaras, Kaylynn J, Chao, Karissa, Topol, Sarah, Spencer, Emily, Nicholson, Laura, Aigner, Stefan, Yeo, Gene W, Farnaes, Lauge, Hobbs, Charlotte A, Laurent, Louise C, Knight, Rob, Hodcroft, Emma B, Khan, Kamran, Fusco, Dahlene N, Cooper, Vaughn S, Lemey, Phillipe, Gardner, Lauren, Lamers, Susanna L, Kamil, Jeremy P, Garry, Robert F, Suchard, Marc A, Andersen, Kristian G
Published in medRxiv : the preprint server for health sciences (08.02.2021)

by Keehner, Jocelyn, Abeles, Shira R, Longhurst, Christopher A, Horton, Lucy E, Myers, Frank E, Riggs-Rodriguez, Lindsay, Ahmad, Mohammed, Baxter, Sally, Boussina, Aaron, Cantrell, Kalen, Cardenas, Priscilla, De Hoff, Peter, El-Kareh, Robert, Holland, Jennifer, Ikeda, Daryn, Kurashige, Kirk, Laurent, Louise C, Lucas, Andrew, Pride, David, Sathe, Shashank, Tran, Allen R, Vasylyeva, Tetyana I, Yeo, Gene, Knight, Rob, Wertheim, Joel O, Torriani, Francesca J
Published in Clinical infectious diseases (15.05.2024)

by Matteson, Nathaniel L, Hassler, Gabriel W, Kurzban, Ezra, Schwab, Madison A, Perkins, Sarah A, Gangavarapu, Karthik, Levy, Joshua I, Parker, Edyth, Pride, David, Hakim, Abbas, De Hoff, Peter, Cheung, Willi, Castro-Martinez, Anelizze, Rivera, Andrea, Veder, Anthony, Rivera, Ariana, Wauer, Cassandra, Holmes, Jacqueline, Wilson, Jedediah, Ngo, Shayla N, Plascencia, Ashley, Lawrence, Elijah S, Smoot, Elizabeth W, Eisner, Emily R, Tsai, Rebecca, Chacón, Marisol, Baer, Nathan A, Seaver, Phoebe, Salido, Rodolfo A, Aigner, Stefan, Ngo, Toan T, Barber, Tom, Ostrander, Tyler, Fielding-Miller, Rebecca, Simmons, Elizabeth H, Zazueta, Oscar E, Serafin-Higuera, Idanya, Sanchez-Alavez, Manuel, Moreno-Camacho, Jose L, García-Gil, Abraham, Murphy Schafer, Ashleigh R, McDonald, Eric, Corrigan, Jeremy, Malone, John D, Stous, Sarah, Shah, Seema, Moshiri, Niema, Weiss, Alana, Anderson, Catelyn, Aceves, Christine M, Spencer, Emily G, Hufbauer, Emory C, Lee, Justin J, King, Alison J, Ramesh, Karthik S, Nguyen, Kelly N, Saucedo, Kieran, Robles-Sikisaka, Refugio, Fisch, Kathleen M, Gonias, Steven L, Birmingham, Amanda, McDonald, Daniel, Karthikeyan, Smruthi, Martin, Natasha K, Schooley, Robert T, Negrete, Agustin J, Reyna, Horacio J, Chavez, Jose R, Garcia, Maria L, Cornejo-Bravo, Jose M, Becker, David, Isaksson, Magnus, Washington, Nicole L, Lee, William, Garfein, Richard S, Luna-Ruiz Esparza, Marco A, Alcántar-Fernández, Jonathan, Henson, Benjamin, Jepsen, Kristen, Olivares-Flores, Beatriz, Barrera-Badillo, Gisela, Lopez-Martínez, Irma, Ramírez-González, José E, Flores-León, Rita, Kingsmore, Stephen F, Sanders, Alison, Pradenas, Allorah, White, Benjamin, Matthews, Gary, Hale, Matt, McLawhon, Ronald W, Reed, Sharon L, Winbush, Terri, McHardy, Ian H, Fielding, Russel A, Nicholson, Laura, Quigley, Michael M, Harding, Aaron, Mendoza, Art, Bakhtar, Omid
Published in Cell (21.12.2023)

by Fielding-Miller, Rebecca, Karthikeyan, Smruthi, Gaines, Tommi, Garfein, Richard S., Salido, Rodolfo A., Cantu, Victor J., Kohn, Laura, Martin, Natasha K., Wynn, Adriane, Wijaya, Carrissa, Flores, Marlene, Omaleki, Vinton, Majnoonian, Araz, Gonzalez-Zuniga, Patricia, Nguyen, Megan, Vo, Anh V., Le, Tina, Duong, Dawn, Hassani, Ashkan, Tweeten, Samantha, Jepsen, Kristen, Henson, Benjamin, Hakim, Abbas, Birmingham, Amanda, De Hoff, Peter, Mark, Adam M., Nasamran, Chanond A., Rosenthal, Sara Brin, Moshiri, Niema, Fisch, Kathleen M., Humphrey, Greg, Farmer, Sawyer, Tubb, Helena M., Valles, Tommy, Morris, Justin, Kang, Jaeyoung, Khaleghi, Behnam, Young, Colin, Akel, Ameen D., Eilert, Sean, Eno, Justin, Curewitz, Ken, Laurent, Louise C., Rosing, Tajana, Knight, Rob, Baer, Nathan A., Barber, Tom, Castro-Martinez, Anelizze, Chacón, Marisol, Cheung, Willi, Crescini, Evelyn S., Eisner, Emily R., Franco Vargas, Lizbeth, Hakim, Abbas, Hobbs, Charlotte, Lastrella, Alma L., Lawrence, Elijah S., Matteson, Nathaniel L., Gangavarapu, Karthik, Ngo, Toan T., Seaver, Phoebe, Smoot, Elizabeth W., Tsai, Rebecca, Xia, Bing, Aigner, Stefan, Anderson, Catelyn, Belda-Ferre, Pedro, Sathe, Shashank, Zeller, Mark, Andersen, Kristian G., Yeo, Gene W., Kurzban, Ezra
Published in Lancet Regional Health - Americas (Online) (01.03.2023)

by Rebecca Fielding-Miller, Smruthi Karthikeyan, Tommi Gaines, Richard S. Garfein, Rodolfo A. Salido, Victor J. Cantu, Laura Kohn, Natasha K. Martin, Adriane Wynn, Carrissa Wijaya, Marlene Flores, Vinton Omaleki, Araz Majnoonian, Patricia Gonzalez-Zuniga, Megan Nguyen, Anh V. Vo, Tina Le, Dawn Duong, Ashkan Hassani, Samantha Tweeten, Kristen Jepsen, Benjamin Henson, Abbas Hakim, Amanda Birmingham, Peter De Hoff, Adam M. Mark, Chanond A. Nasamran, Sara Brin Rosenthal, Niema Moshiri, Kathleen M. Fisch, Greg Humphrey, Sawyer Farmer, Helena M. Tubb, Tommy Valles, Justin Morris, Jaeyoung Kang, Behnam Khaleghi, Colin Young, Ameen D. Akel, Sean Eilert, Justin Eno, Ken Curewitz, Louise C. Laurent, Tajana Rosing, Rob Knight, Nathan A. Baer, Tom Barber, Anelizze Castro-Martinez, Marisol Chacón, Willi Cheung, Evelyn S. Crescini, Emily R. Eisner, Lizbeth Franco Vargas, Abbas Hakim, Charlotte Hobbs, Alma L. Lastrella, Elijah S. Lawrence, Nathaniel L. Matteson, Karthik Gangavarapu, Toan T. Ngo, Phoebe Seaver, Elizabeth W. Smoot, Rebecca Tsai, Bing Xia, Stefan Aigner, Catelyn Anderson, Pedro Belda-Ferre, Shashank Sathe, Mark Zeller, Kristian G. Andersen, Gene W. Yeo, Ezra Kurzban
Published in Lancet Regional Health - Americas (Online) (01.03.2023)

by Gangavarapu, Karthik, Latif, Alaa Abdel, Mullen, Julia L, Alkuzweny, Manar, Hufbauer, Emory, Tsueng, Ginger, Haag, Emily, Zeller, Mark, Aceves, Christine M, Zaiets, Karina, Cano, Marco, Zhou, Jerry, Qian, Zhongchao, Sattler, Rachel, Matteson, Nathaniel L, Levy, Joshua I, Lee, Raphael Tc, Freitas, Lucas, Maurer-Stroh, Sebastian, Suchard, Marc A, Wu, Chunlei, Su, Andrew I, Andersen, Kristian G, Hughes, Laura D
Published in Research square (28.06.2022)

by Dellicour, Simon, Lequime, Sebastian, Vrancken, Bram, Gill, Mandev S, Bastide, Paul, Gangavarapu, Karthik, Matteson, Nathaniel L, Tan, Yi, Louis Du Plessis, Fisher, Alexander A, Nelson, Martha I, Gilbert, Marius, Suchard, Marc A, Andersen, Kristian G, Grubaugh, Nathan D, Pybus, Oliver G, Lemey, Philippe
Published in bioRxiv (19.09.2020)

by Cantrell, Kalen, Fedarko, Marcus W, Rahman, Gibraan, Mcdonald, Daniel, Yang, Yimeng, Thant Zaw, Gonzalez, Antonio, Janssen, Stefan, Estaki, Mehrbod, Haiminen, Niina, Beck, Kristen L, Zhu, Qiyun, Sayyari, Erfan, Morton, Jamie, Tripathi, Anupriya, Gauglitz, Julia M, Marotz, Clarisse, Matteson, Nathaniel L, Martino, Cameron, Sanders, Jon G, Carrieri, Anna Paola, Se Jin Song, Swafford, Austin D, Dorrestein, Pieter C, Andersen, Kristian G, Parida, Laxmi, Ho-Cheol, Kim, Vázquez-Baeza, Yoshiki, Knight, Rob
Published in bioRxiv (08.10.2020)

by Grubaugh, Nathan D, Gangavarapu, Karthik, Quick, Joshua, Matteson, Nathaniel L, Jaqueline Goes De Jesus, Main, Bradley J, Tan, Amanda L, Paul, Lauren M, Brackney, Doug E, Grewal, Saran, Gurfield, Nikos, Koen Ka Van Rompay, Isern, Sharon, Michael, Scott F, Coffey, Lark L, Loman, Nicholas J, Andersen, Kristian G
Published in bioRxiv (05.08.2018)