An Approach to Function Annotation for Proteins of Unknown Function (PUFs) in the Transcriptome of Indian Mulberry
Dhanyalakshmi, K H, Naika, Mahantesha B N, Sajeevan, R S, Mathew, Oommen K, Shafi, K Mohamed, Sowdhamini, Ramanathan, N Nataraja, Karaba
Published in PloS one (16.03.2016)
Published in PloS one (16.03.2016)
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Journal Article
PIMADb: A Database of Protein-Protein Interactions in Huge Macromolecular Assemblies
Mathew, Oommen K., Sowdhamini, Ramanathan
Published in Bioinformatics and Biology Insights (01.01.2016)
Published in Bioinformatics and Biology Insights (01.01.2016)
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Journal Article
Pipeline to upgrade the genome annotations
Gopi, Lijin K., Mathew, Oommen K., Kumar, Dhinoth
Published in Canadian Journal of Biotechnology (01.12.2017)
Published in Canadian Journal of Biotechnology (01.12.2017)
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Journal Article
Dataset for the combined transcriptome assembly of M. oleifera and functional annotation
Shafi, K. Mohamed, Joshi, Adwait G., Meenakshi, Iyer, Pasha, Shaik Naseer, Harini, K., Mahita, Jarjapu, Sajeevan, Radha Sivarajan, Karpe, Snehal D., Ghosh, Pritha, Nitish, Sathyanarayanan, Gandhimathi, A., Mathew, Oommen K., Prasanna, Subramanian Hari, Malini, Manoharan, Mutt, Eshita, Naika, Mahantesha, Ravooru, Nithin, Rao, Rajas M., Shingate, Prashant N., Sukhwal, Anshul, Sunitha, Margaret S., Upadhyay, Atul K., Vinekar, Rithvik S., Sowdhamini, Ramanathan
Published in Data in brief (01.06.2020)
Published in Data in brief (01.06.2020)
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Journal Article
A knowledge-driven protocol for prediction of proteins of interest with an emphasis on biosynthetic pathways
Joshi, Adwait G., Harini, K., Meenakshi, Iyer, Shafi, K. Mohamed, Pasha, Shaik Naseer, Mahita, Jarjapu, Sajeevan, Radha Sivarajan, Karpe, Snehal D., Ghosh, Pritha, Nitish, Sathyanarayanan, Gandhimathi, A., Mathew, Oommen K., Prasanna, Subramanian Hari, Malini, Manoharan, Mutt, Eshita, Naika, Mahantesha, Ravooru, Nithin, Rao, Rajas M., Shingate, Prashant N., Sukhwal, Anshul, Sunitha, Margaret S., Upadhyay, Atul K., Vinekar, Rithvik S., Sowdhamini, Ramanathan
Published in MethodsX (01.01.2020)
Published in MethodsX (01.01.2020)
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Journal Article
DOCKSCORE: a webserver for ranking protein-protein docked poses
Malhotra, Sony, Mathew, Oommen K, Sowdhamini, Ramanathan
Published in BMC bioinformatics (24.04.2015)
Published in BMC bioinformatics (24.04.2015)
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Journal Article
STIFDB2: an updated version of plant stress-responsive transcription factor database with additional stress signals, stress-responsive transcription factor binding sites and stress-responsive genes in Arabidopsis and rice
Naika, Mahantesha, Shameer, Khader, Mathew, Oommen K, Gowda, Ramanjini, Sowdhamini, Ramanathan
Published in Plant and cell physiology (01.02.2013)
Published in Plant and cell physiology (01.02.2013)
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Journal Article
A comparative study of Bisulphite-seq analysis pipeline
Pradeep, Chaitra, Nandan, Dharam, Kumari, Rashmi, Viswanathan, Baskar, Velayutham, Dinesh, Mathew, Oommen K., Kumar, Dhinoth
Published in Canadian Journal of Biotechnology (01.12.2017)
Published in Canadian Journal of Biotechnology (01.12.2017)
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Journal Article
The Indian cobra reference genome and transcriptome enables comprehensive identification of venom toxins
Suryamohan, Kushal, Krishnankutty, Sajesh P, Guillory, Joseph, Jevit, Matthew, Schröder, Markus S, Wu, Meng, Kuriakose, Boney, Mathew, Oommen K, Perumal, Rajadurai C, Koludarov, Ivan, Goldstein, Leonard D, Senger, Kate, Dixon, Mandumpala Davis, Velayutham, Dinesh, Vargas, Derek, Chaudhuri, Subhra, Muraleedharan, Megha, Goel, Ridhi, Chen, Ying-Jiun J, Ratan, Aakrosh, Liu, Peter, Faherty, Brendan, de la Rosa, Guillermo, Shibata, Hiroki, Baca, Miriam, Sagolla, Meredith, Ziai, James, Wright, Gus A, Vucic, Domagoj, Mohan, Sangeetha, Antony, Aju, Stinson, Jeremy, Kirkpatrick, Donald S, Hannoush, Rami N, Durinck, Steffen, Modrusan, Zora, Stawiski, Eric W, Wiley, Kristen, Raudsepp, Terje, Kini, R Manjunatha, Zachariah, Arun, Seshagiri, Somasekar
Published in Nature genetics (01.01.2020)
Published in Nature genetics (01.01.2020)
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Journal Article
PASS2.7: a database containing structure-based sequence alignments and associated features of protein domain superfamilies from SCOPe
Bhattacharyya, Teerna, Nayak, Soumya, Goswami, Smit, Gadiyaram, Vasundhara, Mathew, Oommen K, Sowdhamini, Ramanathan
Published in Database : the journal of biological databases and curation (12.04.2022)
Published in Database : the journal of biological databases and curation (12.04.2022)
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Journal Article
POEAS: Automated Plant Phenomic Analysis Using Plant Ontology
Shameer, Khader, Naika, Mahantesha Bn, Mathew, Oommen K., Sowdhamini, Ramanathan
Published in Bioinformatics and Biology Insights (01.01.2014)
Published in Bioinformatics and Biology Insights (01.01.2014)
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Journal Article
Sepsis in the era of data-driven medicine: personalizing risks, diagnoses, treatments and prognoses
Liu, Andrew C, Patel, Krishna, Vunikili, Ramya Dhatri, Johnson, Kipp W, Abdu, Fahad, Belman, Shivani Kamath, Glicksberg, Benjamin S, Tandale, Pratyush, Fontanez, Roberto, Mathew, Oommen K, Kasarskis, Andrew, Mukherjee, Priyabrata, Subramanian, Lakshminarayanan, Dudley, Joel T, Shameer, Khader
Published in Briefings in bioinformatics (15.07.2020)
Published in Briefings in bioinformatics (15.07.2020)
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Journal Article
LenVarDB: database of length-variant protein domains
Mutt, Eshita, Mathew, Oommen K, Sowdhamini, Ramanathan
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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Journal Article
PASS2 database for the structure-based sequence alignment of distantly related SCOP domain superfamilies: update to version 5 and added features
Gandhimathi, Arumugam, Ghosh, Pritha, Hariharaputran, Sridhar, Mathew, Oommen K, Sowdhamini, R
Published in Nucleic acids research (04.01.2016)
Published in Nucleic acids research (04.01.2016)
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Journal Article
The transcriptome enables the identification of candidate genes behind medicinal value of Drumstick tree (Moringa oleifera)
Pasha, Shaik Naseer, Shafi, K. Mohamed, Joshi, Adwait G., Meenakshi, Iyer, Harini, K., Mahita, Jarjapu, Sajeevan, Radha Sivarajan, Karpe, Snehal D., Ghosh, Pritha, Nitish, Sathyanarayanan, Gandhimathi, A., Mathew, Oommen K., Prasanna, Subramanian Hari, Malini, Manoharan, Mutt, Eshita, Naika, Mahantesha, Ravooru, Nithin, Rao, Rajas M., Shingate, Prashant N., Sukhwal, Anshul, Sunitha, Margaret S., Upadhyay, Atul K., Vinekar, Rithvik S., Sowdhamini, Ramanathan
Published in Genomics (San Diego, Calif.) (01.01.2020)
Published in Genomics (San Diego, Calif.) (01.01.2020)
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Journal Article
Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties
Upadhyay, Atul K, Chacko, Anita R, Gandhimathi, A, Ghosh, Pritha, Harini, K, Joseph, Agnel P, Joshi, Adwait G, Karpe, Snehal D, Kaushik, Swati, Kuravadi, Nagesh, Lingu, Chandana S, Mahita, J, Malarini, Ramya, Malhotra, Sony, Malini, Manoharan, Mathew, Oommen K, Mutt, Eshita, Naika, Mahantesha, Nitish, Sathyanarayanan, Pasha, Shaik Naseer, Raghavender, Upadhyayula S, Rajamani, Anantharamanan, Shilpa, S, Shingate, Prashant N, Singh, Heikham Russiachand, Sukhwal, Anshul, Sunitha, Margaret S, Sumathi, Manojkumar, Ramaswamy, S, Gowda, Malali, Sowdhamini, Ramanathan
Published in BMC plant biology (28.08.2015)
Published in BMC plant biology (28.08.2015)
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Journal Article
Phenotypic expression and clinical outcomes in a South Asian PRKAG2 cardiomyopathy cohort
Ahamed, Hisham, Balegadde, Aniketh Vijay, Menon, Shilpa, Menon, Ramesh, Ramachandran, Aishwarya, Mathew, Navin, Natarajan, K U, Nair, Indu Ramachandran, Kannan, Rajesh, Shankar, Meghna, Mathew, Oommen K, Nguyen, Thong T, Gupta, Ravi, Stawiski, Eric W, Ramprasad, V L, Seshagiri, Somasekar, Phalke, Sameer
Published in Scientific reports (26.11.2020)
Published in Scientific reports (26.11.2020)
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