Inference of differentially expressed genes using generalized linear mixed models in a pairwise fashion
Terra Machado, Douglas, Bernardes Brustolini, Otávio José, Côrtes Martins, Yasmmin, Grivet Mattoso Maia, Marco Antonio, Ribeiro de Vasconcelos, Ana Tereza
Published in PeerJ (San Francisco, CA) (03.04.2023)
Published in PeerJ (San Francisco, CA) (03.04.2023)
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Journal Article
Differential haplotype expression in class I MHC genes during SARS-CoV-2 infection of human lung cell lines
Francisco Junior, Ronaldo da Silva, Temerozo, Jairo R, Ferreira, Cristina Dos Santos, Martins, Yasmmin, Souza, Thiago Moreno L, Medina-Acosta, Enrique, de Vasconcelos, Ana Tereza Ribeiro
Published in Frontiers in immunology (01.02.2023)
Published in Frontiers in immunology (01.02.2023)
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Journal Article
Large-Scale Protein Interactions Prediction by Multiple Evidence Analysis Associated With an In-Silico Curation Strategy
Martins, Yasmmin Côrtes, Ziviani, Artur, Nicolás, Marisa Fabiana, de Vasconcelos, Ana Tereza Ribeiro
Published in Frontiers in bioinformatics (06.09.2021)
Published in Frontiers in bioinformatics (06.09.2021)
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Journal Article
Pervasive Inter-Individual Variation in Allele-Specific Expression in Monozygotic Twins
da Silva Francisco Junior, Ronaldo, Dos Santos Ferreira, Cristina, Santos E Silva, Juan Carlo, Terra Machado, Douglas, Côrtes Martins, Yasmmin, Ramos, Victor, Simões Carnivali, Gustavo, Garcia, Ana Beatriz, Medina-Acosta, Enrique
Published in Frontiers in genetics (26.11.2019)
Published in Frontiers in genetics (26.11.2019)
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Journal Article
Turnover of SARS-CoV-2 Lineages Shaped the Pandemic and Enabled the Emergence of New Variants in the State of Rio de Janeiro, Brazil
Francisco Junior, Ronaldo da Silva, Lamarca, Alessandra P, de Almeida, Luiz G P, Cavalcante, Liliane, Machado, Douglas Terra, Martins, Yasmmin, Brustolini, Otávio, Gerber, Alexandra L, Guimarães, Ana Paula de C, Gonçalves, Reinaldo Bellini, Alves, Cassia, Mariani, Diana, Cruz, Thais Felix, de Souza, Isabelle Vasconcellos, de Carvalho, Erika Martins, Ribeiro, Mario Sergio, Carvalho, Silvia, da Silva, Flávio Dias, Garcia, Márcio Henrique de Oliveira, de Souza, Leandro Magalhães, da Silva, Cristiane Gomes, Ribeiro, Caio Luiz Pereira, Cavalcanti, Andréa Cony, de Mello, Claudia Maria Braga, Struchiner, Cláudio J., Tanuri, Amilcar, de Vasconcelos, Ana Tereza R
Published in Viruses (07.10.2021)
Published in Viruses (07.10.2021)
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Journal Article
PPIntegrator: semantic integrative system for protein–protein interaction and application for host–pathogen datasets
Martins, Yasmmin Côrtes, Ziviani, Artur, Cerqueira e Costa, Maiana de Oliveira, Cavalcanti, Maria Cláudia Reis, Nicolás, Marisa Fabiana, de Vasconcelos, Ana Tereza Ribeiro
Published in Bioinformatics advances (2023)
Published in Bioinformatics advances (2023)
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Journal Article
Emergence of Within-Host SARS-CoV-2 Recombinant Genome After Coinfection by Gamma and Delta Variants: A Case Report
Francisco Junior, Ronaldo da Silva, de Almeida, Luiz G P, Lamarca, Alessandra P, Cavalcante, Liliane, Martins, Yasmmin, Gerber, Alexandra L, Guimarães, Ana Paula de C, Salviano, Ricardo Barbosa, Dos Santos, Fernanda Leitão, de Oliveira, Thiago Henrique, de Souza, Isabelle Vasconcellos, de Carvalho, Erika Martins, Ribeiro, Mario Sergio, Carvalho, Silvia, da Silva, Flávio Dias, Garcia, Marcio Henrique de Oliveira, de Souza, Leandro Magalhães, da Silva, Cristiane Gomes, Ribeiro, Caio Luiz Pereira, Cavalcanti, Andréa Cony, de Mello, Claudia Maria Braga, Tanuri, Amilcar, Vasconcelos, Ana Tereza R
Published in Frontiers in public health (22.02.2022)
Published in Frontiers in public health (22.02.2022)
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Journal Article
The gene regulatory network of Staphylococcus aureus ST239-SCCmecIII strain Bmb9393 and assessment of genes associated with the biofilm in diverse backgrounds
Costa, Maiana de Oliveira Cerqueira e, Nascimento, Ana Paula Barbosa do, Martins, Yasmmin Cortes, Santos, Marcelo Trindade dos, Figueiredo, Agnes Marie de Sá, Perez-Rueda, Ernesto, Nicolás, Marisa Fabiana
Published in Frontiers in microbiology (10.01.2023)
Published in Frontiers in microbiology (10.01.2023)
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Journal Article
FAIR privacy-preserving operation of large genomic variant calling format (VCF) data without download or installation
Martins, Yasmmin C, Bhawsar, Praphulla Ms, Balasubramanian, Jeya B, Russ, Daniel, Wong, Wendy Sw, Maass, Wolfgang, Almeida, Jonas S
Published in AMIA Summits on Translational Science proceedings (2024)
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Published in AMIA Summits on Translational Science proceedings (2024)
Journal Article
The gene regulatory network of Staphylococcus aureus ST239-SCC mec III strain Bmb9393 and assessment of genes associated with the biofilm in diverse backgrounds
Costa, Maiana de Oliveira Cerqueira E, do Nascimento, Ana Paula Barbosa, Martins, Yasmmin Cortes, Dos Santos, Marcelo Trindade, Figueiredo, Agnes Marie de Sá, Perez-Rueda, Ernesto, Nicolás, Marisa Fabiana
Published in Frontiers in microbiology (2022)
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Published in Frontiers in microbiology (2022)
Journal Article
PRScalc, a privacy-preserving calculation of raw polygenic risk scores from direct-to-consumer genomics data
Sandoval, Lorena, Jafri, Saleet, Balasubramanian, Jeya Balaji, Bhawsar, Praphulla, Edelson, Jacob L, Martins, Yasmmin, Maass, Wolfgang, Chanock, Stephen J, Garcia-Closas, Montserrat, Almeida, Jonas S
Published in Bioinformatics advances (05.01.2023)
Published in Bioinformatics advances (05.01.2023)
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Journal Article
mSigSDK -- private, at scale, computation of mutation signatures
Ge, Aaron, Martins, Yasmmin Côrtes, Zhang, Tongwu, Chen, Kailing, Landi, Maria Teresa, Park, Brian, Balasubramanian, Jeya, Almeida, Jonas S
Published in arXiv.org (19.01.2024)
Published in arXiv.org (19.01.2024)
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Paper
Journal Article
mSigSDK - private, at scale, computation of mutation signatures
Ge, Aaron, Zhang, Tongwu, Martins, Yasmmin Côrtes, Landi, Maria Teresa, Park, Brian, Chen, Kailing, Balasubramanian, Jeya, Almeida, Jonas S
Published in ArXiv.org (19.01.2024)
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Published in ArXiv.org (19.01.2024)
Journal Article