Genomic benchmarks: a collection of datasets for genomic sequence classification
Grešová, Katarína, Martinek, Vlastimil, Čechák, David, Šimeček, Petr, Alexiou, Panagiotis
Published in BMC genetics (01.05.2023)
Published in BMC genetics (01.05.2023)
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Journal Article
Deep learning and direct sequencing of labeled RNA captures transcriptome dynamics
Martinek, Vlastimil, Martin, Jessica, Belair, Cedric, Payea, Matthew J, Malla, Sulochan, Alexiou, Panagiotis, Maragkakis, Manolis
Published in NAR genomics and bioinformatics (01.09.2024)
Published in NAR genomics and bioinformatics (01.09.2024)
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Journal Article
Calc-X and Calcformers: Empowering Arithmetical Chain-of-Thought through Interaction with Symbolic Systems
Kadlčík, Marek, Štefánik, Michal, Sotolář, Ondřej, Martinek, Vlastimil
Year of Publication 24.05.2023
Year of Publication 24.05.2023
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Journal Article
Deep learning and direct sequencing of labeled RNA captures transcriptome dynamics
Martinek, Vlastimil, Martin, Jessica, Belair, Cedric, Payea, Matthew J, Malla, Sulochan, Alexiou, Panagiotis, Maragkakis, Manolis
Published in bioRxiv (17.11.2023)
Published in bioRxiv (17.11.2023)
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Full-length direct RNA sequencing uncovers stress-granule dependent RNA decay upon cellular stress
Dar, Showkat A, Malla, Sulochan, Martinek, Vlastimil, Payea, Matthew J, Lee, Christopher T, Martin, Jessica, Khandeshi, Aditya J, Martindale, Jennifer L, Belair, Cedric, Maragkakis, Manolis
Published in bioRxiv (27.08.2024)
Published in bioRxiv (27.08.2024)
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Journal Article
Fine-Tuning Transformers For Genomic Tasks
Martinek, Vlastimil, Cechak, David, Gresova, Katarina, Alexiou, Panagiotis, Simecek, Petr
Published in bioRxiv (10.02.2022)
Published in bioRxiv (10.02.2022)
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