Better Epitope Discovery, Precision Immune Engineering, and Accelerated Vaccine Design Using Immunoinformatics Tools
De Groot, Anne S, Moise, Leonard, Terry, Frances, Gutierrez, Andres H, Hindocha, Pooja, Richard, Guilhem, Hoft, Daniel Fredric, Ross, Ted M, Noe, Amy R, Takahashi, Yoshimasa, Kotraiah, Vinayaka, Silk, Sarah E, Nielsen, Carolyn M, Minassian, Angela M, Ashfield, Rebecca, Ardito, Matt, Draper, Simon J, Martin, William D
Published in Frontiers in immunology (07.04.2020)
Published in Frontiers in immunology (07.04.2020)
Get full text
Journal Article
Neoadjuvant personalized cancer vaccines: the final frontier?
Richard, Guilhem, Ruggiero, Nicole, Steinberg, Gary D, Martin, William D, De Groot, Anne S
Published in Expert review of vaccines (2024)
Published in Expert review of vaccines (2024)
Get full text
Journal Article
Does human homology reduce the potential immunogenicity of non-antibody scaffolds?
De Groot, Anne S., Khan, Sundos, Mattei, Aimee E., Lelias, Sandra, Martin, William D.
Published in Frontiers in immunology (07.11.2023)
Published in Frontiers in immunology (07.11.2023)
Get full text
Journal Article
In silico methods for immunogenicity risk assessment and human homology screening for therapeutic antibodies
Mattei, Aimee E, Gutierrez, Andres H, Seshadri, Soorya, Tivin, Jacob, Ardito, Matt, Rosenberg, Amy S, Martin, William D, De Groot, Anne S
Published in mAbs (2024)
Published in mAbs (2024)
Get full text
Journal Article
Assessing the immunogenicity risk of salmon calcitonin peptide impurities using in silico and in vitro methods
Roberts, Brian J., Mattei, Aimee E., Howard, Kristina E., Weaver, James L., Liu, Hao, Lelias, Sandra, Martin, William D., Verthelyi, Daniela, Pang, Eric, Edwards, Katie J., De Groot, Anne S.
Published in Frontiers in pharmacology (09.08.2024)
Published in Frontiers in pharmacology (09.08.2024)
Get full text
Journal Article
A humanized mouse model identifies key amino acids for low immunogenicity of H7N9 vaccines
Wada, Yamato, Nithichanon, Arnone, Nobusawa, Eri, Moise, Leonard, Martin, William D, Yamamoto, Norio, Terahara, Kazutaka, Hagiwara, Haruhisa, Odagiri, Takato, Tashiro, Masato, Lertmemongkolchai, Ganjana, Takeyama, Haruko, Groot, Anne S De, Ato, Manabu, Takahashi, Yoshimasa
Published in Scientific reports (28.04.2017)
Published in Scientific reports (28.04.2017)
Get full text
Journal Article
Promiscuous Coxiella burnetii CD4 Epitope Clusters Associated With Human Recall Responses Are Candidates for a Novel T-Cell Targeted Multi-Epitope Q Fever Vaccine
Scholzen, Anja, Richard, Guilhem, Moise, Leonard, Baeten, Laurie A, Reeves, Patrick M, Martin, William D, Brauns, Timothy A, Boyle, Christine M, Raju Paul, Susan, Bucala, Richard, Bowen, Richard A, Garritsen, Anja, De Groot, Anne S, Sluder, Ann E, Poznansky, Mark C
Published in Frontiers in immunology (15.02.2019)
Published in Frontiers in immunology (15.02.2019)
Get full text
Journal Article
Multi-step screening of neoantigens' HLA- and TCR-interfaces improves prediction of survival
Richard, Guilhem, De Groot, Anne S, Steinberg, Gary D, Garcia, Tzintzuni I, Kacew, Alec, Ardito, Matthew, Martin, William D, Berdugo, Gad, Princiotta, Michael F, Balar, Arjun V, Sweis, Randy F
Published in Scientific reports (11.05.2021)
Published in Scientific reports (11.05.2021)
Get full text
Journal Article
New Immunoinformatics Tools for Swine: Designing Epitope-Driven Vaccines, Predicting Vaccine Efficacy, and Making Vaccines on Demand
Moise, Lenny, Gutiérrez, Andres H, Khan, Sundos, Tan, Swan, Ardito, Matt, Martin, William D, De Groot, Anne S
Published in Frontiers in immunology (05.10.2020)
Published in Frontiers in immunology (05.10.2020)
Get full text
Journal Article
Identification of immunodominant T cell epitopes induced by natural Zika virus infection
Eickhoff, Christopher S., Meza, Krystal A., Terry, Frances E., Colbert, Chase G., Blazevic, Azra, Gutiérrez, Andres H., Stone, E. Taylor, Brien, James D., Pinto, Amelia K., El Sahly, Hana M., Mulligan, Mark J., Rouphael, Nadine, Alcaide, Maria L., Tomashek, Kay M., Focht, Chris, Martin, William D., Moise, Leonard, De Groot, Anne S., Hoft, Daniel F.
Published in Frontiers in immunology (29.08.2023)
Published in Frontiers in immunology (29.08.2023)
Get full text
Journal Article
Immune Tolerance-Adjusted Personalized Immunogenicity Prediction for Pompe Disease
De Groot, Anne S., Desai, Ankit K., Lelias, Sandra, Miah, S. M. Shahjahan, Terry, Frances E., Khan, Sundos, Li, Cindy, Yi, John S., Ardito, Matt, Martin, William D., Kishnani, Priya S.
Published in Frontiers in immunology (16.06.2021)
Published in Frontiers in immunology (16.06.2021)
Get full text
Journal Article
In silico identification and modification of T cell epitopes in pertussis antigens associated with tolerance
Kruiswijk, Corine, Richard, Guilhem, Salverda, Merijn L.M., Hindocha, Pooja, Martin, William D., De Groot, Anne S., Van Riet, Elly
Published in Human vaccines & immunotherapeutics (01.02.2020)
Published in Human vaccines & immunotherapeutics (01.02.2020)
Get full text
Journal Article
Immune escape and immune camouflage may reduce the efficacy of RTS,S vaccine in Malawi
Khan, Sundos, Parrillo, Matthew, Gutierrez, Andres H., Terry, Frances E., Moise, Leonard, Martin, William D., De Groot, Anne S.
Published in Human vaccines & immunotherapeutics (01.02.2020)
Published in Human vaccines & immunotherapeutics (01.02.2020)
Get full text
Journal Article
Development and validation of an epitope prediction tool for swine (PigMatrix) based on the pocket profile method
Gutiérrez, Andres H, Martin, William D, Bailey-Kellogg, Chris, Terry, Frances, Moise, Leonard, De Groot, Anne S
Published in BMC bioinformatics (15.09.2015)
Published in BMC bioinformatics (15.09.2015)
Get full text
Journal Article
Identification and Immune Assessment of T Cell Epitopes in Five Plasmodium falciparum Blood Stage Antigens to Facilitate Vaccine Candidate Selection and Optimization
Kotraiah, Vinayaka, Phares, Timothy W., Terry, Frances E., Hindocha, Pooja, Silk, Sarah E., Nielsen, Carolyn M., Moise, Leonard, Tucker, Kenneth D., Ashfield, Rebecca, Martin, William D., De Groot, Anne S., Draper, Simon J., Gutierrez, Gabriel M., Noe, Amy R.
Published in Frontiers in immunology (07.07.2021)
Published in Frontiers in immunology (07.07.2021)
Get full text
Journal Article
Bridging Computational Vaccinology and Vaccine Development Through Systematic Identification, Characterization, and Downselection of Conserved and Variable Circumsporozoite Protein CD4 T Cell Epitopes From Diverse Plasmodium falciparum Strains
Noe, Amy R., Terry, Frances E., Schanen, Brian C., Sassano, Emily, Hindocha, Pooja, Phares, Timothy W., Moise, Leonard, Christen, Jayne M., Tucker, Kenneth D., Kotraiah, Vinayaka, Drake, Donald R., Martin, William D., De Groot, Anne S., Gutierrez, Gabriel M.
Published in Frontiers in immunology (08.06.2021)
Published in Frontiers in immunology (08.06.2021)
Get full text
Journal Article
Identification, Selection and Immune Assessment of Liver Stage CD8 T Cell Epitopes From Plasmodium falciparum
Tucker, Kenneth D., Schanen, Brian C., Phares, Timothy W., Sassano, Emily, Terry, Frances E., Hindocha, Pooja, Moise, Leonard, Kotraiah, Vinayaka, Martin, William D., De Groot, Anne S., Drake, Donald R., Gutierrez, Gabriel M., Noe, Amy R.
Published in Frontiers in immunology (07.05.2021)
Published in Frontiers in immunology (07.05.2021)
Get full text
Journal Article
An immunoinformatics-derived DNA vaccine encoding human class II T cell epitopes of Ebola virus, Sudan virus, and Venezuelan equine encephalitis virus is immunogenic in HLA transgenic mice
Bounds, Callie E., Terry, Frances E., Moise, Leonard, Hannaman, Drew, Martin, William D., De Groot, Anne S., Suschak, John J., Dupuy, Lesley C., Schmaljohn, Connie S.
Published in Human vaccines & immunotherapeutics (02.12.2017)
Published in Human vaccines & immunotherapeutics (02.12.2017)
Get full text
Journal Article