Deep learning allows genome-scale prediction of Michaelis constants from structural features
Kroll, Alexander, Engqvist, Martin K M, Heckmann, David, Lercher, Martin J
Published in PLoS biology (19.10.2021)
Published in PLoS biology (19.10.2021)
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Journal Article
A general model to predict small molecule substrates of enzymes based on machine and deep learning
Kroll, Alexander, Ranjan, Sahasra, Engqvist, Martin K M, Lercher, Martin J
Published in Nature communications (15.05.2023)
Published in Nature communications (15.05.2023)
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Journal Article
Machine Learning Applied to Predicting Microorganism Growth Temperatures and Enzyme Catalytic Optima
Li, Gang, Rabe, Kersten S, Nielsen, Jens, Engqvist, Martin K. M
Published in ACS synthetic biology (21.06.2019)
Published in ACS synthetic biology (21.06.2019)
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Journal Article
Nucleotide pools dictate the identity and frequency of ribonucleotide incorporation in mitochondrial DNA
Berglund, Anna-Karin, Navarrete, Clara, Engqvist, Martin K M, Hoberg, Emily, Szilagyi, Zsolt, Taylor, Robert W, Gustafsson, Claes M, Falkenberg, Maria, Clausen, Anders R
Published in PLoS genetics (16.02.2017)
Published in PLoS genetics (16.02.2017)
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Engineering Saccharomyces cerevisiae for the production and secretion of Affibody molecules
Gast, Veronica, Sandegren, Anna, Dunås, Finn, Ekblad, Siri, Güler, Rezan, Thorén, Staffan, Tous Mohedano, Marta, Molin, Mikael, Engqvist, Martin K M, Siewers, Verena
Published in Microbial cell factories (09.03.2022)
Published in Microbial cell factories (09.03.2022)
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Journal Article
Directed evolution of a far-red fluorescent rhodopsin
McIsaac, R. Scott, Engqvist, Martin K. M., Wannier, Timothy, Rosenthal, Adam Z., Herwig, Lukas, Flytzanis, Nicholas C., Imasheva, Eleonora S., Lanyi, Janos K., Balashov, Sergei P., Gradinaru, Viviana, Arnold, Frances H.
Published in Proceedings of the National Academy of Sciences - PNAS (09.09.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (09.09.2014)
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The influence of alternative pathways of respiration that utilize branched‐chain amino acids following water shortage in Arabidopsis
Pires, Marcel V., Pereira Júnior, Adilson A., Medeiros, David B., Daloso, Danilo M., Pham, Phuong Anh, Barros, Kallyne A., Engqvist, Martin K. M., Florian, Alexandra, Krahnert, Ina, Maurino, Veronica G., Araújo, Wagner L., Fernie, Alisdair R.
Published in Plant, cell and environment (01.06.2016)
Published in Plant, cell and environment (01.06.2016)
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Journal Article
Different Routes of Protein Folding Contribute to Improved Protein Production in Saccharomyces cerevisiae
Qi, Qi, Li, Feiran, Yu, Rosemary, Engqvist, Martin K M, Siewers, Verena, Fuchs, Johannes, Nielsen, Jens
Published in mBio (10.11.2020)
Published in mBio (10.11.2020)
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A synthesis of bacterial and archaeal phenotypic trait data
Madin, Joshua S, Nielsen, Daniel A, Brbic, Maria, Corkrey, Ross, Danko, David, Edwards, Kyle, Engqvist, Martin K M, Fierer, Noah, Geoghegan, Jemma L, Gillings, Michael, Kyrpides, Nikos C, Litchman, Elena, Mason, Christopher E, Moore, Lisa, Nielsen, Søren L, Paulsen, Ian T, Price, Nathan D, Reddy, T B K, Richards, Matthew A, Rocha, Eduardo P C, Schmidt, Thomas M, Shaaban, Heba, Shukla, Maulik, Supek, Fran, Tetu, Sasha G, Vieira-Silva, Sara, Wattam, Alice R, Westfall, David A, Westoby, Mark
Published in Scientific data (05.06.2020)
Published in Scientific data (05.06.2020)
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Journal Article
Synergistic neurotoxicity of opioids and human immunodeficiency virus-1 Tat protein in striatal neurons in vitro
Gurwell, J.A., Nath, A., Sun, Q., Zhang, J., Martin, K.M., Chen, Y., Hauser, K.F.
Published in Neuroscience (01.01.2001)
Published in Neuroscience (01.01.2001)
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Journal Article
Learning deep representations of enzyme thermal adaptation
Li, Gang, Buric, Filip, Zrimec, Jan, Viknander, Sandra, Nielsen, Jens, Zelezniak, Aleksej, Engqvist, Martin K. M.
Published in Protein science (01.12.2022)
Published in Protein science (01.12.2022)
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d-Lactate dehydrogenase as a marker gene allows positive selection of transgenic plants
Wienstroer, Judith, Engqvist, Martin K.M., Kunz, Hans-Henning, Flügge, Ulf-Ingo, Maurino, Veronica G.
Published in FEBS letters (02.01.2012)
Published in FEBS letters (02.01.2012)
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Expanding functional protein sequence spaces using generative adversarial networks
Repecka, Donatas, Jauniskis, Vykintas, Karpus, Laurynas, Rembeza, Elzbieta, Rokaitis, Irmantas, Zrimec, Jan, Poviloniene, Simona, Laurynenas, Audrius, Viknander, Sandra, Abuajwa, Wissam, Savolainen, Otto, Meskys, Rolandas, Engqvist, Martin K. M., Zelezniak, Aleksej
Published in Nature machine intelligence (01.04.2021)
Published in Nature machine intelligence (01.04.2021)
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