Opportunities at the Intersection of Synthetic Biology, Machine Learning, and Automation
Carbonell, Pablo, Radivojevic, Tijana, García Martín, Héctor
Published in ACS synthetic biology (19.07.2019)
Published in ACS synthetic biology (19.07.2019)
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Journal Article
Accurate phylogenetic classification of variable-length DNA fragments
Rigoutsos, Isidore, McHardy, Alice Carolyn, Martín, Héctor García, Tsirigos, Aristotelis, Hugenholtz, Philip
Published in Nature methods (01.01.2007)
Published in Nature methods (01.01.2007)
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Journal Article
Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities
Hugenholtz, Philip, Martín, Héctor García, Ivanova, Natalia, Kunin, Victor, Warnecke, Falk, Barry, Kerrie W, McHardy, Alice C, Yeates, Christine, He, Shaomei, Salamov, Asaf A, Szeto, Ernest, Dalin, Eileen, Putnam, Nik H, Shapiro, Harris J, Pangilinan, Jasmyn L, Rigoutsos, Isidore, Kyrpides, Nikos C, Blackall, Linda Louise, McMahon, Katherine D
Published in Nature biotechnology (01.10.2006)
Published in Nature biotechnology (01.10.2006)
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Journal Article
ClusterCAD: a computational platform for type I modular polyketide synthase design
Eng, Clara H, Backman, Tyler W H, Bailey, Constance B, Magnan, Christophe, García Martín, Héctor, Katz, Leonard, Baldi, Pierre, Keasling, Jay D
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Journal Article
On the Origin and Robustness of Power-Law Species-Area Relationships in Ecology
Martín, Héctor García, Goldenfeld, Nigel
Published in Proceedings of the National Academy of Sciences - PNAS (05.07.2006)
Published in Proceedings of the National Academy of Sciences - PNAS (05.07.2006)
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Journal Article
A Method to Constrain Genome-Scale Models with 13C Labeling Data
Martín, Héctor García, Kumar, Vinay Satish, Weaver, Daniel, Ghosh, Amit, Chubukov, Victor, Mukhopadhyay, Aindrila, Arkin, Adam, Keasling, Jay D
Published in PLoS computational biology (01.09.2015)
Published in PLoS computational biology (01.09.2015)
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Journal Article
The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism
Birkel, Garrett W, Ghosh, Amit, Kumar, Vinay S, Weaver, Daniel, Ando, David, Backman, Tyler W H, Arkin, Adam P, Keasling, Jay D, Martín, Héctor García
Published in BMC bioinformatics (05.04.2017)
Published in BMC bioinformatics (05.04.2017)
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Journal Article
Automated “Cells-To-Peptides” Sample Preparation Workflow for High-Throughput, Quantitative Proteomic Assays of Microbes
Chen, Yan, Guenther, Joel M, Gin, Jennifer W, Chan, Leanne Jade G, Costello, Zak, Ogorzalek, Tadeusz L, Tran, Huu M, Blake-Hedges, Jacquelyn M, Keasling, Jay D, Adams, Paul D, García Martín, Héctor, Hillson, Nathan J, Petzold, Christopher J
Published in Journal of proteome research (04.10.2019)
Published in Journal of proteome research (04.10.2019)
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Journal Article
Structural insights into dehydratase substrate selection for the borrelidin and fluvirucin polyketide synthases
Barajas, Jesus F., McAndrew, Ryan P., Thompson, Mitchell G., Backman, Tyler W. H., Pang, Bo, de Rond, Tristan, Pereira, Jose H., Benites, Veronica T., Martín, Héctor García, Baidoo, Edward E. K., Hillson, Nathan J., Adams, Paul D., Keasling, Jay D.
Published in Journal of industrial microbiology & biotechnology (01.08.2019)
Published in Journal of industrial microbiology & biotechnology (01.08.2019)
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Journal Article
Flux Analysis of Central Metabolic Pathways in Geobacter metallireducens during Reduction of Soluble Fe(III)-Nitrilotriacetic Acid
Tang, Yinjie J, Chakraborty, Romy, Martín, Héctor García, Chu, Jeannie, Hazen, Terry C, Keasling, Jay D
Published in Applied and Environmental Microbiology (01.06.2007)
Published in Applied and Environmental Microbiology (01.06.2007)
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Journal Article
Erratum to: The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism
Birkel, Garrett W, Ghosh, Amit, Kumar, Vinay S, Weaver, Daniel, Ando, David, Backman, Tyler W H, Arkin, Adam P, Keasling, Jay D, Martín, Héctor García
Published in BMC bioinformatics (18.04.2017)
Published in BMC bioinformatics (18.04.2017)
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Journal Article
Study of stationary phase metabolism via isotopomer analysis of amino acids from an isolated protein
Shaikh, Afshan S., Tang, Yinjie J., Mukhopadhyay, Aindrila, Martín, Héctor García, Gin, Jennifer, Benke, Peter I., Keasling, Jay D.
Published in Biotechnology progress (01.01.2010)
Published in Biotechnology progress (01.01.2010)
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Journal Article
Common principles and best practices for engineering microbiomes
Lawson, Christopher E, Harcombe, William R, Hatzenpichler, Roland, Lindemann, Stephen R, Löffler, Frank E, O'Malley, Michelle A, García Martín, Héctor, Pfleger, Brian F, Raskin, Lutgarde, Venturelli, Ophelia S, Weissbrodt, David G, Noguera, Daniel R, McMahon, Katherine D
Published in Nature reviews. Microbiology (01.12.2019)
Published in Nature reviews. Microbiology (01.12.2019)
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Journal Article
Flux-Enabled Exploration of the Role of Sip1 in Galactose Yeast Metabolism
Shymansky, Christopher M, Wang, George, Baidoo, Edward E K, Gin, Jennifer, Apel, Amanda Reider, Mukhopadhyay, Aindrila, García Martín, Héctor, Keasling, Jay D
Published in Frontiers in bioengineering and biotechnology (24.05.2017)
Published in Frontiers in bioengineering and biotechnology (24.05.2017)
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Journal Article
Microbial Synthesis of Pinene
Sarria, Stephen, Wong, Betty, Martín, Hector García, Keasling, Jay D, Peralta-Yahya, Pamela
Published in ACS synthetic biology (18.07.2014)
Published in ACS synthetic biology (18.07.2014)
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Journal Article
A peptide-based method for [sup.13]C metabolic flux analysis in microbial communities
Ghosh, Amit, Nilmeier, Jerome, Weaver, Daniel, Adams, Paul D, Keasling, Jay D, Mukhopadhyay, Aindrila, Petzold, Christopher J, Martin, Hector Garcia
Published in PLoS computational biology (01.09.2014)
Published in PLoS computational biology (01.09.2014)
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Journal Article
A High-Quality Genome-Scale Model for Rhodococcus opacus Metabolism
Roell, Garrett W., Schenk, Christina, Anthony, Winston E., Carr, Rhiannon R., Ponukumati, Aditya, Kim, Joonhoon, Akhmatskaya, Elena, Foston, Marcus, Dantas, Gautam, Moon, Tae Seok, Tang, Yinjie J., García Martín, Hector
Published in ACS synthetic biology (16.06.2023)
Published in ACS synthetic biology (16.06.2023)
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Journal Article
A Method to Constrain Genome-Scale Models with 13 C Labeling Data: e1004363
Martín, Héctor García, Kumar, Vinay Satish, Weaver, Daniel, Ghosh, Amit, Chubukov, Victor, Mukhopadhyay, Aindrila, Arkin, Adam, Keasling, Jay D
Published in PLoS computational biology (01.09.2015)
Published in PLoS computational biology (01.09.2015)
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