Antibodies to Enteroviruses in Cerebrospinal Fluid of Patients with Acute Flaccid Myelitis
Mishra, Nischay, Ng, Terry Fei Fan, Marine, Rachel L, Jain, Komal, Ng, James, Thakkar, Riddhi, Caciula, Adrian, Price, Adam, Garcia, Joel A, Burns, Jane C, Thakur, Kiran T, Hetzler, Kimbell L, Routh, Janell A, Konopka-Anstadt, Jennifer L, Nix, W Allan, Tokarz, Rafal, Briese, Thomas, Oberste, M Steven, Lipkin, W Ian
Published in mBio (13.08.2019)
Published in mBio (13.08.2019)
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Journal Article
The effect of variant interference on de novo assembly for viral deep sequencing
Castro, Christina J, Marine, Rachel L, Ramos, Edward, Ng, Terry Fei Fan
Published in BMC genomics (22.06.2020)
Published in BMC genomics (22.06.2020)
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Journal Article
Genetic diversity of human sapovirus across the Americas
Diez-Valcarce, Marta, Castro, Christina J., Marine, Rachel L., Halasa, Natasha, Mayta, Holger, Saito, Mayuko, Tsaknaridis, Laura, Pan, Chao-Yang, Bucardo, Filemon, Becker-Dreps, Sylvia, Lopez, Maria Renee, Magaña, Laura Cristal, Ng, Terry Fei Fan, Vinjé, Jan
Published in Journal of clinical virology (01.07.2018)
Published in Journal of clinical virology (01.07.2018)
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Journal Article
Sequence-matching adapter trimmers generate consistent quality and assembly metrics for Illumina sequencing of RNA viruses
Nabakooza, Grace, Wagner, Darlene D, Momin, Nehalraza, Marine, Rachel L, Weldon, William C, Oberste, M Steven
Published in BMC research notes (14.10.2024)
Published in BMC research notes (14.10.2024)
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Journal Article
Novel chaperonins are prevalent in the virioplankton and demonstrate links to viral biology and ecology
Marine, Rachel L, Nasko, Daniel J, Wray, Jeffrey, Polson, Shawn W, Wommack, K Eric
Published in The ISME Journal (01.11.2017)
Published in The ISME Journal (01.11.2017)
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Journal Article
VPipe: an Automated Bioinformatics Platform for Assembly and Management of Viral Next-Generation Sequencing Data
Wagner, Darlene D, Marine, Rachel L, Ramos, Edward, Ng, Terry Fei Fan, Castro, Christina J, Okomo-Adhiambo, Margaret, Harvey, Krysten, Doho, Gregory, Kelly, Reagan, Jain, Yatish, Tatusov, Roman L, Silva, Hideky, Rota, Paul A, Khan, Agha N, Oberste, M Steven
Published in Microbiology spectrum (27.04.2022)
Published in Microbiology spectrum (27.04.2022)
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Journal Article
Genetic and Epidemiologic Trends of Norovirus Outbreaks in the United States from 2013 to 2016 Demonstrated Emergence of Novel GII.4 Recombinant Viruses
Cannon, Jennifer L, Barclay, Leslie, Collins, Nikail R, Wikswo, Mary E, Castro, Christina J, Magaña, Laura Cristal, Gregoricus, Nicole, Marine, Rachel L, Chhabra, Preeti, Vinjé, Jan
Published in Journal of clinical microbiology (01.07.2017)
Published in Journal of clinical microbiology (01.07.2017)
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Journal Article
Strengthening laboratory surveillance of viral pathogens: Experiences and lessons learned building next-generation sequencing capacity in Ghana
Marine, Rachel L., Ntim, Nana Afia Asante, Castro, Christina J., Attiku, Keren O., Pratt, Deborah, Duker, Ewurabena, Agbosu, Esinam, Ng, Terry Fei Fan, Gatei, Wangeci, Obodai, Evangeline, Odoom, John Kofi, Walker, Chastity L., Rota, Paul A., Oberste, M. Steven, Ampofo, William Kwabena, Balajee, S. Arunmozhi
Published in International journal of infectious diseases (01.04.2019)
Published in International journal of infectious diseases (01.04.2019)
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Journal Article
Near-Complete Genome Sequences of Several New Norovirus Genogroup II Genotypes
Chhabra, Preeti, Aswath, Kshama, Collins, Nikail, Ahmed, Tahmeed, Olórtegui, Maribel Paredes, Kosek, Margaret, Cebelinski, Elizabeth, Cooper, Phil J, Bucardo, Filemon, Lopez, Maria Renee, Castro, Christina J, Marine, Rachel L, Ng, Terry Fei Fan, Vinjé, Jan
Published in Genome announcements (Washington, DC) (08.02.2018)
Published in Genome announcements (Washington, DC) (08.02.2018)
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Journal Article
Pan-viral serology implicates enteroviruses in acute flaccid myelitis
Schubert, Ryan D., Hawes, Isobel A., Ramachandran, Prashanth S., Ramesh, Akshaya, Crawford, Emily D., Pak, John E., Wu, Wesley, Cheung, Carly K., O’Donovan, Brian D., Tato, Cristina M., Lyden, Amy, Tan, Michelle, Sit, Rene, Sowa, Gavin M., Sample, Hannah A., Zorn, Kelsey C., Banerji, Debarko, Khan, Lillian M., Bove, Riley, Hauser, Stephen L., Gelfand, Amy A., Johnson-Kerner, Bethany L., Nash, Kendall, Krishnamoorthy, Kalpathy S., Chitnis, Tanuja, Ding, Joy Z., McMillan, Hugh J., Chiu, Charles Y., Briggs, Benjamin, Glaser, Carol A., Yen, Cynthia, Chu, Victoria, Wadford, Debra A., Dominguez, Samuel R., Ng, Terry Fei Fan, Marine, Rachel L., Lopez, Adriana S., Nix, W. Allan, Soldatos, Ariane, Gorman, Mark P., Benson, Leslie, Messacar, Kevin, Konopka-Anstadt, Jennifer L., Oberste, M. Steven, DeRisi, Joseph L., Wilson, Michael R.
Published in Nature medicine (01.11.2019)
Published in Nature medicine (01.11.2019)
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Journal Article
Comparison of Illumina MiSeq and the Ion Torrent PGM and S5 platforms for whole-genome sequencing of picornaviruses and caliciviruses
Marine, Rachel L., Magaña, Laura C., Castro, Christina J., Zhao, Kun, Montmayeur, Anna M., Schmidt, Alexander, Diez-Valcarce, Marta, Ng, Terry Fei Fan, Vinjé, Jan, Burns, Cara C., Nix, W. Allan, Rota, Paul A., Oberste, M. Steven
Published in Journal of virological methods (01.06.2020)
Published in Journal of virological methods (01.06.2020)
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Journal Article
Next-generation sequencing of human respiratory syncytial virus subgroups A and B genomes
Wang, Lijuan, Ng, Terry Fei Fan, Castro, Christina J., Marine, Rachel L., Magaña, Laura C., Esona, Mathew, Peret, Teresa C.T., Thornburg, Natalie J.
Published in Journal of virological methods (01.01.2022)
Published in Journal of virological methods (01.01.2022)
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Journal Article
Correction for Cannon et al., "Genetic and Epidemiologic Trends of Norovirus Outbreaks in the United States from 2013 to 2016 Demonstrated Emergence of Novel GII.4 Recombinant Viruses"
Cannon, Jennifer L, Barclay, Leslie, Collins, Nikail R, Wikswo, Mary E, Castro, Christina J, Magaña, Laura Cristal, Gregoricus, Nicole, Marine, Rachel L, Chhabra, Preeti, Vinjé, Jan
Published in Journal of clinical microbiology (01.07.2019)
Published in Journal of clinical microbiology (01.07.2019)
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Journal Article
Author Correction: Pan-viral serology implicates enteroviruses in acute flaccid myelitis
Schubert, Ryan D., Hawes, Isobel A., Ramachandran, Prashanth S., Ramesh, Akshaya, Crawford, Emily D., Pak, John E., Wu, Wesley, Cheung, Carly K., O’Donovan, Brian D., Tato, Cristina M., Lyden, Amy, Tan, Michelle, Sit, Rene, Sowa, Gavin M., Sample, Hannah A., Zorn, Kelsey C., Banerji, Debarko, Khan, Lillian M., Bove, Riley, Hauser, Stephen L., Gelfand, Amy A., Johnson-Kerner, Bethany L., Nash, Kendall, Krishnamoorthy, Kalpathy S., Chitnis, Tanuja, Ding, Joy Z., McMillan, Hugh J., Chiu, Charles Y., Briggs, Benjamin, Glaser, Carol A., Yen, Cynthia, Chu, Victoria, Wadford, Debra A., Dominguez, Samuel R., Ng, Terry Fei Fan, Marine, Rachel L., Lopez, Adriana S., Nix, W. Allan, Soldatos, Ariane, Gorman, Mark P., Benson, Leslie, Messacar, Kevin, Konopka-Anstadt, Jennifer L., Oberste, M. Steven, DeRisi, Joseph L., Wilson, Michael R.
Published in Nature medicine (01.10.2021)
Published in Nature medicine (01.10.2021)
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Journal Article
Nearly Complete Genome Sequences of Type 2 Sabin-Like Polioviruses from Northern Nigerian Poliovirus Surveillance, 2016 to 2018
Zhao, Kun, Schmidt, Alexander, Tang, Kevin, Castro, Christina J, Liu, Hongmei, Pang, Hong, Chen, Qi, Baba, Marycelin, Soji, Oderinde Bamidele, Bukbuk, David, Akinola, Monilade, Adeniji, Johnson Adekunle, Marine, Rachel L, Ng, Terry Fei Fan, Jorba, Jaume, Burns, Cara C
Published in Microbiology resource announcements (24.01.2023)
Published in Microbiology resource announcements (24.01.2023)
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Journal Article
Complete Genome Sequences of Human Astrovirus Prototype Strains (Types 1 to 8)
Castro, Christina J, Reynolds, Emily, Monroe, Stephan S, Marine, Rachel L, Vinjé, Jan
Published in Microbiology resource announcements (14.02.2019)
Published in Microbiology resource announcements (14.02.2019)
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Journal Article
Whole-Genome Sequence of Human Rhinovirus C47, Isolated from an Adult Respiratory Illness Outbreak in Butte County, California, 2017
Pan, Chao-Yang, Padilla, Tasha, Yagi, Shigeo, Lewis, Linda S, Ng, Terry Fei Fan, Marine, Rachel L, Nix, William Allan, Wadford, Debra A
Published in Genome announcements (Washington, DC) (01.02.2018)
Published in Genome announcements (Washington, DC) (01.02.2018)
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Journal Article
Genome Sequences of Rhinovirus Genotype C56 Detected in Three Patients with Acute Respiratory Illness, California, 2016 to 2017
Pan, Chao-Yang, Yagi, Shigeo, Padilla, Tasha, Fei Fan Ng, Terry, Marine, Rachel L, Nix, W Allan, Wadford, Debra A
Published in Microbiology resource announcements (23.08.2018)
Published in Microbiology resource announcements (23.08.2018)
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Journal Article
Nearly Complete Genome Sequence of an Echovirus 30 Strain from a Cluster of Aseptic Meningitis Cases in California, September 2017
Pan, Chao-Yang, Huynh, Thalia, Padilla, Tasha, Chen, Alice, Ng, Terry Fei Fan, Marine, Rachel L, Castro, Christina J, Nix, W Allan, Wadford, Debra A
Published in Microbiology resource announcements (31.10.2019)
Published in Microbiology resource announcements (31.10.2019)
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Journal Article
Complete Genome Sequences of Mumps and Measles Virus Isolates from Three States in the United States
Magaña, Laura C, Espinosa, Alex, Marine, Rachel L, Ng, Terry Fei Fan, Castro, Christina J, Montmayeur, Anna M, Hacker, Jill K, Scott, Samantha, Whyte, Thomas, Bankamp, Bettina, Oberste, M Steven, Rota, Paul A
Published in Genome announcements (Washington, DC) (17.08.2017)
Published in Genome announcements (Washington, DC) (17.08.2017)
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Journal Article