Next-generation sequencing platforms
Mardis, Elaine R
Published in Annual review of analytical chemistry (Palo Alto, Calif.) (12.06.2013)
Published in Annual review of analytical chemistry (Palo Alto, Calif.) (12.06.2013)
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Journal Article
Tumor neoantigens: building a framework for personalized cancer immunotherapy
Gubin, Matthew M, Artyomov, Maxim N, Mardis, Elaine R, Schreiber, Robert D
Published in The Journal of clinical investigation (01.09.2015)
Published in The Journal of clinical investigation (01.09.2015)
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Journal Article
Genomic Landscape of Non-Small Cell Lung Cancer in Smokers and Never-Smokers
Govindan, Ramaswamy, Ding, Li, Griffith, Malachi, Subramanian, Janakiraman, Dees, Nathan D., Kanchi, Krishna L., Maher, Christopher A., Fulton, Robert, Fulton, Lucinda, Wallis, John, Chen, Ken, Walker, Jason, McDonald, Sandra, Bose, Ron, Ornitz, David, Xiong, Donghai, You, Ming, Dooling, David J., Watson, Mark, Mardis, Elaine R., Wilson, Richard K.
Published in Cell (14.09.2012)
Published in Cell (14.09.2012)
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Journal Article
Contribution of systemic and somatic factors to clinical response and resistance to PD-L1 blockade in urothelial cancer: An exploratory multi-omic analysis
Snyder, Alexandra, Nathanson, Tavi, Funt, Samuel A, Ahuja, Arun, Buros Novik, Jacqueline, Hellmann, Matthew D, Chang, Eliza, Aksoy, Bulent Arman, Al-Ahmadie, Hikmat, Yusko, Erik, Vignali, Marissa, Benzeno, Sharon, Boyd, Mariel, Moran, Meredith, Iyer, Gopa, Robins, Harlan S, Mardis, Elaine R, Merghoub, Taha, Hammerbacher, Jeff, Rosenberg, Jonathan E, Bajorin, Dean F
Published in PLoS medicine (26.05.2017)
Published in PLoS medicine (26.05.2017)
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Journal Article
De Novo Gene Disruptions in Children on the Autistic Spectrum
Iossifov, Ivan, Ronemus, Michael, Levy, Dan, Wang, Zihua, Hakker, Inessa, Rosenbaum, Julie, Yamrom, Boris, Lee, Yoon-ha, Narzisi, Giuseppe, Leotta, Anthony, Kendall, Jude, Grabowska, Ewa, Ma, Beicong, Marks, Steven, Rodgers, Linda, Stepansky, Asya, Troge, Jennifer, Andrews, Peter, Bekritsky, Mitchell, Pradhan, Kith, Ghiban, Elena, Kramer, Melissa, Parla, Jennifer, Demeter, Ryan, Fulton, Lucinda L., Fulton, Robert S., Magrini, Vincent J., Ye, Kenny, Darnell, Jennifer C., Darnell, Robert B., Mardis, Elaine R., Wilson, Richard K., Schatz, Michael C., McCombie, W. Richard, Wigler, Michael
Published in Neuron (Cambridge, Mass.) (26.04.2012)
Published in Neuron (Cambridge, Mass.) (26.04.2012)
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Journal Article
INTEGRATE-neo: a pipeline for personalized gene fusion neoantigen discovery
Zhang, Jin, Mardis, Elaine R, Maher, Christopher A
Published in Bioinformatics (Oxford, England) (15.02.2017)
Published in Bioinformatics (Oxford, England) (15.02.2017)
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Journal Article
VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing
Koboldt, Daniel C, Zhang, Qunyuan, Larson, David E, Shen, Dong, McLellan, Michael D, Lin, Ling, Miller, Christopher A, Mardis, Elaine R, Ding, Li, Wilson, Richard K
Published in Genome research (01.03.2012)
Published in Genome research (01.03.2012)
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Journal Article
Recurrent somatic structural variations contribute to tumorigenesis in pediatric osteosarcoma
Chen, Xiang, Bahrami, Armita, Pappo, Alberto, Easton, John, Dalton, James, Hedlund, Erin, Ellison, David, Shurtleff, Sheila, Wu, Gang, Wei, Lei, Parker, Matthew, Rusch, Michael, Nagahawatte, Panduka, Wu, Jianrong, Mao, Shenghua, Boggs, Kristy, Mulder, Heather, Yergeau, Donald, Lu, Charles, Ding, Li, Edmonson, Michael, Qu, Chunxu, Wang, Jianmin, Li, Yongjin, Navid, Fariba, Daw, Najat C, Mardis, Elaine R, Wilson, Richard K, Downing, James R, Zhang, Jinghui, Dyer, Michael A
Published in Cell reports (Cambridge) (01.04.2014)
Published in Cell reports (Cambridge) (01.04.2014)
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Journal Article
Functional Heterogeneity of Genetically Defined Subclones in Acute Myeloid Leukemia
Klco, Jeffery M., Spencer, David H., Miller, Christopher A., Griffith, Malachi, Lamprecht, Tamara L., O’Laughlin, Michelle, Fronick, Catrina, Magrini, Vincent, Demeter, Ryan T., Fulton, Robert S., Eades, William C., Link, Daniel C., Graubert, Timothy A., Walter, Matthew J., Mardis, Elaine R., Dipersio, John F., Wilson, Richard K., Ley, Timothy J.
Published in Cancer cell (17.03.2014)
Published in Cancer cell (17.03.2014)
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Journal Article
SciClone: inferring clonal architecture and tracking the spatial and temporal patterns of tumor evolution
Miller, Christopher A, White, Brian S, Dees, Nathan D, Griffith, Malachi, Welch, John S, Griffith, Obi L, Vij, Ravi, Tomasson, Michael H, Graubert, Timothy A, Walter, Matthew J, Ellis, Matthew J, Schierding, William, DiPersio, John F, Ley, Timothy J, Mardis, Elaine R, Wilson, Richard K, Ding, Li
Published in PLoS computational biology (01.08.2014)
Published in PLoS computational biology (01.08.2014)
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Journal Article
Germline Mutations in Predisposition Genes in Pediatric Cancer
Zhang, Jinghui, Walsh, Michael F, Wu, Gang, Edmonson, Michael N, Gruber, Tanja A, Easton, John, Hedges, Dale, Ma, Xiaotu, Zhou, Xin, Yergeau, Donald A, Wilkinson, Mark R, Vadodaria, Bhavin, Chen, Xiang, McGee, Rose B, Hines-Dowell, Stacy, Nuccio, Regina, Quinn, Emily, Shurtleff, Sheila A, Rusch, Michael, Patel, Aman, Becksfort, Jared B, Wang, Shuoguo, Weaver, Meaghann S, Ding, Li, Mardis, Elaine R, Wilson, Richard K, Gajjar, Amar, Ellison, David W, Pappo, Alberto S, Pui, Ching-Hon, Nichols, Kim E, Downing, James R
Published in The New England journal of medicine (10.12.2015)
Published in The New England journal of medicine (10.12.2015)
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Journal Article
MuSiC: identifying mutational significance in cancer genomes
Dees, Nathan D, Zhang, Qunyuan, Kandoth, Cyriac, Wendl, Michael C, Schierding, William, Koboldt, Daniel C, Mooney, Thomas B, Callaway, Matthew B, Dooling, David, Mardis, Elaine R, Wilson, Richard K, Ding, Li
Published in Genome research (01.08.2012)
Published in Genome research (01.08.2012)
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Journal Article
The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis
Aldiri, Issam, Xu, Beisi, Wang, Lu, Chen, Xiang, Hiler, Daniel, Griffiths, Lyra, Valentine, Marc, Shirinifard, Abbas, Thiagarajan, Suresh, Sablauer, Andras, Barabas, Marie-Elizabeth, Zhang, Jiakun, Johnson, Dianna, Frase, Sharon, Zhou, Xin, Easton, John, Zhang, Jinghui, Mardis, Elaine R., Wilson, Richard K., Downing, James R., Dyer, Michael A.
Published in Neuron (Cambridge, Mass.) (03.05.2017)
Published in Neuron (Cambridge, Mass.) (03.05.2017)
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Journal Article
VarScan: variant detection in massively parallel sequencing of individual and pooled samples
Koboldt, Daniel C., Chen, Ken, Wylie, Todd, Larson, David E., McLellan, Michael D., Mardis, Elaine R., Weinstock, George M., Wilson, Richard K., Ding, Li
Published in Bioinformatics (01.09.2009)
Published in Bioinformatics (01.09.2009)
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Journal Article
SomaticSniper: identification of somatic point mutations in whole genome sequencing data
Larson, David E., Harris, Christopher C., Chen, Ken, Koboldt, Daniel C., Abbott, Travis E., Dooling, David J., Ley, Timothy J., Mardis, Elaine R., Wilson, Richard K., Ding, Li
Published in Bioinformatics (01.02.2012)
Published in Bioinformatics (01.02.2012)
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Journal Article
DGIdb 5.0: rebuilding the drug–gene interaction database for precision medicine and drug discovery platforms
Cannon, Matthew, Stevenson, James, Stahl, Kathryn, Basu, Rohit, Coffman, Adam, Kiwala, Susanna, McMichael, Joshua F, Kuzma, Kori, Morrissey, Dorian, Cotto, Kelsy, Mardis, Elaine R, Griffith, Obi L, Griffith, Malachi, Wagner, Alex H
Published in Nucleic acids research (05.01.2024)
Published in Nucleic acids research (05.01.2024)
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