Immune cell profiling of the cerebrospinal fluid enables the characterization of the brain metastasis microenvironment
Rubio-Perez, Carlota, Planas-Rigol, Ester, Trincado, Juan L., Bonfill-Teixidor, Ester, Arias, Alexandra, Marchese, Domenica, Moutinho, Catia, Serna, Garazi, Pedrosa, Leire, Iurlaro, Raffaella, Martínez-Ricarte, Francisco, Escudero, Laura, Cordero, Esteban, Cicuendez, Marta, Ruiz, Sara, Parra, Genís, Nuciforo, Paolo, Gonzalez, Josep, Pineda, Estela, Sahuquillo, Juan, Tabernero, Josep, Heyn, Holger, Seoane, Joan
Published in Nature communications (08.03.2021)
Published in Nature communications (08.03.2021)
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Advances in the characterization of RNA‐binding proteins
Marchese, Domenica, de Groot, Natalia Sanchez, Lorenzo Gotor, Nieves, Livi, Carmen Maria, Tartaglia, Gian G.
Published in Wiley interdisciplinary reviews. RNA (01.11.2016)
Published in Wiley interdisciplinary reviews. RNA (01.11.2016)
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Macrophage and neutrophil heterogeneity at single-cell spatial resolution in human inflammatory bowel disease
Garrido-Trigo, Alba, Corraliza, Ana M., Veny, Marisol, Dotti, Isabella, Melón-Ardanaz, Elisa, Rill, Aina, Crowell, Helena L., Corbí, Ángel, Gudiño, Victoria, Esteller, Miriam, Álvarez-Teubel, Iris, Aguilar, Daniel, Masamunt, M. Carme, Killingbeck, Emily, Kim, Youngmi, Leon, Michael, Visvanathan, Sudha, Marchese, Domenica, Caratù, Ginevra, Martin-Cardona, Albert, Esteve, Maria, Ordás, Ingrid, Panés, Julian, Ricart, Elena, Mereu, Elisabetta, Heyn, Holger, Salas, Azucena
Published in Nature communications (26.07.2023)
Published in Nature communications (26.07.2023)
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Sampling time-dependent artifacts in single-cell genomics studies
Massoni-Badosa, Ramon, Iacono, Giovanni, Moutinho, Catia, Kulis, Marta, Palau, Núria, Marchese, Domenica, Rodríguez-Ubreva, Javier, Ballestar, Esteban, Rodriguez-Esteban, Gustavo, Marsal, Sara, Aymerich, Marta, Colomer, Dolors, Campo, Elias, Julià, Antonio, Martín-Subero, José Ignacio, Heyn, Holger
Published in Genome Biology (11.05.2020)
Published in Genome Biology (11.05.2020)
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FixNCut: single-cell genomics through reversible tissue fixation and dissociation
Jiménez-Gracia, Laura, Marchese, Domenica, Nieto, Juan C, Caratù, Ginevra, Melón-Ardanaz, Elisa, Gudiño, Victoria, Roth, Sara, Wise, Kellie, Ryan, Natalie K, Jensen, Kirk B, Hernando-Momblona, Xavier, Bernardes, Joana P, Tran, Florian, Sievers, Laura Katharina, Schreiber, Stefan, van den Berge, Maarten, Kole, Tessa, van der Velde, Petra L, Nawijn, Martijn C, Rosenstiel, Philip, Batlle, Eduard, Butler, Lisa M, Parish, Ian A, Plummer, Jasmine, Gut, Ivo, Salas, Azucena, Heyn, Holger, Martelotto, Luciano G
Published in Genome Biology (29.03.2024)
Published in Genome Biology (29.03.2024)
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Author Correction: Macrophage and neutrophil heterogeneity at single-cell spatial resolution in human inflammatory bowel disease
Garrido-Trigo, Alba, Corraliza, Ana M., Veny, Marisol, Dotti, Isabella, Melón-Ardanaz, Elisa, Rill, Aina, Crowell, Helena L., Corbí, Ángel, Gudiño, Victoria, Esteller, Miriam, Álvarez-Teubel, Iris, Aguilar, Daniel, Masamunt, M. Carme, Killingbeck, Emily, Kim, Youngmi, Leon, Michael, Visvanathan, Sudha, Marchese, Domenica, Caratù, Ginevra, Martin-Cardona, Albert, Esteve, Maria, Ordás, Ingrid, Panés, Julian, Ricart, Elena, Mereu, Elisabetta, Heyn, Holger, Salas, Azucena
Published in Nature communications (29.01.2024)
Published in Nature communications (29.01.2024)
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Principles of self-organization in biological pathways: a hypothesis on the autogenous association of alpha-synuclein
Zanzoni, Andreas, Marchese, Domenica, Agostini, Federico, Bolognesi, Benedetta, Cirillo, Davide, Botta-Orfila, Maria, Livi, Carmen Maria, Rodriguez-Mulero, Silvia, Tartaglia, Gian Gaetano
Published in Nucleic acids research (01.12.2013)
Published in Nucleic acids research (01.12.2013)
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Discovering the 3' UTR-mediated regulation of alpha-synuclein
Marchese, Domenica, Botta-Orfila, Teresa, Cirillo, Davide, Rodriguez, Juan Antonio, Livi, Carmen Maria, Fernández-Santiago, Rubén, Ezquerra, Mario, Martí, Maria J, Bechara, Elias, Tartaglia, Gian Gaetano
Published in Nucleic acids research (15.12.2017)
Published in Nucleic acids research (15.12.2017)
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Albumin reprograms the B cell transcriptional landscape and improves neutrophil antimicrobial function in patients with decompensated cirrhosis
Clària, Joan, Aguilar, Ferran, Lozano, Juan-José, Jiménez-Gracia, Laura, Nieto, Juan C., Romero-Grimaldo, Berta, Marcos-Fa, Xavi, Giarracco, Emma, Weiss, Emmanuel, Trebicka, Jonel, Hernàndez, Inmaculada, Fernandez, Javier, Casulleras, Mireia, López-Vicario, Cristina, Muldur, Sinan, Hopke, Alex, Vlagea, Alexandru, Aransay, Ana M., Marchese, Domenica, Bernardi, Mauro, Jalan, Rajiv, Angeli, Paolo, Magri, Giuliana, Cerutti, Andrea, Irimia, Daniel, Heyn, Holger, Arroyo, Vicente, Moreau, Richard
Published in JHEP reports (01.11.2024)
Published in JHEP reports (01.11.2024)
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A single-cell tumor immune atlas for precision oncology
Nieto, Paula, Elosua-Bayes, Marc, Trincado, Juan L, Marchese, Domenica, Massoni-Badosa, Ramon, Salvany, Maria, Henriques, Ana, Nieto, Juan, Aguilar-Fernández, Sergio, Mereu, Elisabetta, Moutinho, Catia, Ruiz, Sara, Lorden, Patricia, Chin, Vanessa T, Kaczorowski, Dominik, Chan, Chia-Ling, Gallagher, Richard, Chou, Angela, Planas-Rigol, Ester, Rubio-Perez, Carlota, Gut, Ivo, Piulats, Josep M, Seoane, Joan, Powell, Joseph E, Batlle, Eduard, Heyn, Holger
Published in Genome research (01.10.2021)
Published in Genome research (01.10.2021)
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Detection of early seeding of Richter transformation in chronic lymphocytic leukemia
Nadeu, Ferran, Royo, Romina, Massoni-Badosa, Ramon, Playa-Albinyana, Heribert, Garcia-Torre, Beatriz, Duran-Ferrer, Martí, Dawson, Kevin J., Kulis, Marta, Diaz-Navarro, Ander, Villamor, Neus, Melero, Juan L., Chapaprieta, Vicente, Dueso-Barroso, Ana, Delgado, Julio, Moia, Riccardo, Ruiz-Gil, Sara, Marchese, Domenica, Giró, Ariadna, Verdaguer-Dot, Núria, Romo, Mónica, Clot, Guillem, Rozman, Maria, Frigola, Gerard, Rivas-Delgado, Alfredo, Baumann, Tycho, Alcoceba, Miguel, González, Marcos, Climent, Fina, Abrisqueta, Pau, Castellví, Josep, Bosch, Francesc, Aymerich, Marta, Enjuanes, Anna, Ruiz-Gaspà, Sílvia, López-Guillermo, Armando, Jares, Pedro, Beà, Sílvia, Capella-Gutierrez, Salvador, Gelpí, Josep Ll, López-Bigas, Núria, Torrents, David, Campbell, Peter J., Gut, Ivo, Rossi, Davide, Gaidano, Gianluca, Puente, Xose S., Garcia-Roves, Pablo M., Colomer, Dolors, Heyn, Holger, Maura, Francesco, Martín-Subero, José I., Campo, Elías
Published in Nature medicine (01.08.2022)
Published in Nature medicine (01.08.2022)
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The cleverSuite approach for protein characterization: predictions of structural properties, solubility, chaperone requirements and RNA-binding abilities
Klus, Petr, Bolognesi, Benedetta, Agostini, Federico, Marchese, Domenica, Zanzoni, Andreas, Tartaglia, Gian Gaetano
Published in Bioinformatics (01.06.2014)
Published in Bioinformatics (01.06.2014)
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Repression of endogenous retroviruses prevents antiviral immune response and is required for mammary gland development
Avgustinova, Alexandra, Laudanna, Carmelo, Pascual-García, Mónica, Rovira, Quirze, Djurec, Magdolna, Castellanos, Andres, Urdiroz-Urricelqui, Uxue, Marchese, Domenica, Prats, Neus, Van Keymeulen, Alexandra, Heyn, Holger, Vaquerizas, Juan M., Benitah, Salvador Aznar
Published in Cell stem cell (07.10.2021)
Published in Cell stem cell (07.10.2021)
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Systematic benchmarking of single-cell ATAC-sequencing protocols
De Rop, Florian V., Hulselmans, Gert, Flerin, Chris, Soler-Vila, Paula, Rafels, Albert, Christiaens, Valerie, González-Blas, Carmen Bravo, Marchese, Domenica, Caratù, Ginevra, Poovathingal, Suresh, Rozenblatt-Rosen, Orit, Slyper, Michael, Luo, Wendy, Muus, Christoph, Duarte, Fabiana, Shrestha, Rojesh, Bagdatli, S. Tansu, Corces, M. Ryan, Mamanova, Lira, Knights, Andrew, Meyer, Kerstin B., Mulqueen, Ryan, Taherinasab, Akram, Maschmeyer, Patrick, Pezoldt, Jörn, Lambert, Camille Lucie Germaine, Iglesias, Marta, Najle, Sebastián R., Dossani, Zain Y., Martelotto, Luciano G., Burkett, Zach, Lebofsky, Ronald, Martin-Subero, José Ignacio, Pillai, Satish, Sebé-Pedrós, Arnau, Deplancke, Bart, Teichmann, Sarah A., Ludwig, Leif S., Braun, Theodore P., Adey, Andrew C., Greenleaf, William J., Buenrostro, Jason D., Regev, Aviv, Aerts, Stein, Heyn, Holger
Published in Nature biotechnology (01.06.2024)
Published in Nature biotechnology (01.06.2024)
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An atlas of cells in the human tonsil
Massoni-Badosa, Ramon, Aguilar-Fernández, Sergio, Nieto, Juan C., Soler-Vila, Paula, Elosua-Bayes, Marc, Marchese, Domenica, Kulis, Marta, Vilas-Zornoza, Amaia, Bühler, Marco Matteo, Rashmi, Sonal, Alsinet, Clara, Caratù, Ginevra, Moutinho, Catia, Ruiz, Sara, Lorden, Patricia, Lunazzi, Giulia, Colomer, Dolors, Frigola, Gerard, Blevins, Will, Romero-Rivero, Lucia, Jiménez-Martínez, Víctor, Vidal, Anna, Mateos-Jaimez, Judith, Maiques-Diaz, Alba, Ovejero, Sara, Moreaux, Jérôme, Palomino, Sara, Gomez-Cabrero, David, Agirre, Xabier, Weniger, Marc A., King, Hamish W., Garner, Lucy C., Marini, Federico, Cervera-Paz, Francisco Javier, Baptista, Peter M., Vilaseca, Isabel, Rosales, Cecilia, Ruiz-Gaspà, Silvia, Talks, Benjamin, Sidhpura, Keval, Pascual-Reguant, Anna, Hauser, Anja E., Haniffa, Muzlifah, Prosper, Felipe, Küppers, Ralf, Gut, Ivo Glynne, Campo, Elias, Martin-Subero, José Ignacio, Heyn, Holger
Published in Immunity (Cambridge, Mass.) (13.02.2024)
Published in Immunity (Cambridge, Mass.) (13.02.2024)
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Decoding the muscle transcriptome of patients with late onset Pompe disease reveals markers of disease progression
Monceau, Alexandra, Gokul Nath, Rasya, Suárez-Calvet, Xavier, Musumeci, Olimpia, Toscano, Antonio, Kierdaszuk, Biruta, Kostera-Pruszczyk, Anna, Domínguez-González, Cristina, Hernández-Lain, Aurelio, Paradas, Carmen, Rivas, Eloy, Papadimas, George, Papadopoulos, Constantinos, Chrysanthou-Piterou, Margarita, Gallardo, Eduard, Olivé, Montse, Lilleker, James, Roberts, Mark E, Marchese, Domenica, Lunazzi, Giulia, Heyn, Holger, Fernández-Simón, Esther, Villalobos, Elisa, Clark, James, Katsikis, Panos, Collins, Catherine, Mehra, Priyanka, Laidler, Zoe, Vincent, Amy, Tasca, Giorgio, Marini-Bettolo, Chiara, Guglieri, Michela, Straub, Volker, Raben, Nina, Díaz-Manera, Jordi
Published in Brain (London, England : 1878) (24.07.2024)
Published in Brain (London, England : 1878) (24.07.2024)
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A Multimodal Single Cell Atlas of Human Tonsils Reveals New Insights into T and B Cell Differentiation
Aguilar, Sergio, Massoni, Ramon, Soler-Vila, Paula, Nieto, Juan C, Elosua-Bayes, Marc, Marchese, Domenica, Kulis, Marta, Vilas-Zornoza, Amaia, Matteo Bühler, Marco, Rashmi, Sonal, Alsinet, Clara, Caratù, Ginevra, Moutinho, Catia, Ruiz, Sara, Lorden, Patricia, Lunazzi, Giulia, Colomer, Dolors, Frigola, Gerard, Blevins, Will, Palomino, Sara, David, Gomez-Cabrero, Agirre, Xabier, Weniger, Marc, Marini, Federico, Cervera Paz, Francisco Javier, Baptista, Peter M, Vilaseca, Isabel, Prósper, Felipe, Küppers, Ralf, Campo, Elías, Heyn, Holger, Gut, Ivo, Martín-Subero, José I.
Published in Blood (15.11.2022)
Published in Blood (15.11.2022)
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