Toward a gold standard for benchmarking gene set enrichment analysis
Geistlinger, Ludwig, Csaba, Gergely, Santarelli, Mara, Ramos, Marcel, Schiffer, Lucas, Turaga, Nitesh, Law, Charity, Davis, Sean, Carey, Vincent, Morgan, Martin, Zimmer, Ralf, Waldron, Levi
Published in Briefings in bioinformatics (18.01.2021)
Published in Briefings in bioinformatics (18.01.2021)
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Journal Article
HMP16SData: Efficient Access to the Human Microbiome Project Through Bioconductor
Schiffer, Lucas, Azhar, Rimsha, Shepherd, Lori, Ramos, Marcel, Geistlinger, Ludwig, Huttenhower, Curtis, Dowd, Jennifer B, Segata, Nicola, Waldron, Levi
Published in American journal of epidemiology (01.06.2019)
Published in American journal of epidemiology (01.06.2019)
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Journal Article
GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases
Oh, Sehyun, Geistlinger, Ludwig, Ramos, Marcel, Blankenberg, Daniel, van den Beek, Marius, Taroni, Jaclyn N, Carey, Vincent J, Greene, Casey S, Waldron, Levi, Davis, Sean
Published in Nature communications (27.06.2022)
Published in Nature communications (27.06.2022)
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Journal Article
Curated single cell multimodal landmark datasets for R/Bioconductor
Eckenrode, Kelly B, Righelli, Dario, Ramos, Marcel, Argelaguet, Ricard, Vanderaa, Christophe, Geistlinger, Ludwig, Culhane, Aedin C, Gatto, Laurent, Carey, Vincent, Morgan, Martin, Risso, Davide, Waldron, Levi
Published in PLoS computational biology (01.08.2023)
Published in PLoS computational biology (01.08.2023)
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Journal Article
Software for the Integration of Multiomics Experiments in Bioconductor
Ramos, Marcel, Schiffer, Lucas, Re, Angela, Azhar, Rimsha, Basunia, Azfar, Rodriguez, Carmen, Chan, Tiffany, Chapman, Phil, Davis, Sean R, Gomez-Cabrero, David, Culhane, Aedin C, Haibe-Kains, Benjamin, Hansen, Kasper D, Kodali, Hanish, Louis, Marie S, Mer, Arvind S, Riester, Markus, Morgan, Martin, Carey, Vince, Waldron, Levi
Published in Cancer research (Chicago, Ill.) (01.11.2017)
Published in Cancer research (Chicago, Ill.) (01.11.2017)
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Journal Article
Multiomic Integration of Public Oncology Databases in Bioconductor
Ramos, Marcel, Geistlinger, Ludwig, Oh, Sehyun, Schiffer, Lucas, Azhar, Rimsha, Kodali, Hanish, de Bruijn, Ino, Gao, Jianjiong, Carey, Vincent J, Morgan, Martin, Waldron, Levi
Published in JCO clinical cancer informatics (01.11.2020)
Published in JCO clinical cancer informatics (01.11.2020)
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Journal Article
Sea-Surface Slicks and Their Effect on the Concentration of Plastics and Zooplankton in the Coastal Waters of Rapa Nui (Easter Island)
Gallardo, Camila, Ory, Nicolas C., Gallardo, María de los Ángeles, Ramos, Marcel, Bravo, Luis, Thiel, Martin
Published in Frontiers in Marine Science (29.10.2021)
Published in Frontiers in Marine Science (29.10.2021)
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Journal Article
First Deployment and Validation of in Situ Silicate Electrochemical Sensor in Seawater
Barus, Carole, Chen Legrand, Dancheng, Striebig, Nicolas, Jugeau, Benoit, David, Arnaud, Valladares, Maria, Munoz Parra, Praxedes, Ramos, Marcel E., Dewitte, Boris, Garçon, Véronique
Published in Frontiers in Marine Science (26.02.2018)
Published in Frontiers in Marine Science (26.02.2018)
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Journal Article
The ENSO-induced South Pacific Meridional Mode
Dewitte, Boris, Concha, Emilio, Saavedra, Diego, Pizarro, Oscar, Martinez-Villalobos, Cristian, Gushchina, Daria, Ramos, Marcel, Montecinos, Aldo
Published in Frontiers in climate (25.01.2023)
Published in Frontiers in climate (25.01.2023)
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Journal Article
Emergent constraint on oxygenation of the upper South Eastern Pacific oxygen minimum zone in the twenty-first century
Almendra, Ivan, Dewitte, Boris, Garçon, Véronique, Muñoz, Praxedes, Parada, Carolina, Montes, Ivonne, Duteil, Olaf, Paulmier, Aurélien, Pizarro, Oscar, Ramos, Marcel, Koeve, Wolfgang, Oschlies, Andreas
Published in Communications earth & environment (28.05.2024)
Published in Communications earth & environment (28.05.2024)
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Journal Article
Understanding the oceanographic dynamics of the Isla Chañaral baleen whale feeding ground, (Humboldt Archipelago, Northern Chile) to extend habitat protection
Buchan, Susannah J., Ramos, Marcel, Oyanadel, Jorge, Santos-Carvallo, Macarena, Bedriñana-Romano, Luis, Valladares, María, Maldonado, Marinella, Astudillo, Orlando, Sepúlveda, Maritza, Pearce, Steve, Olavarría, Carlos
Published in Frontiers in Marine Science (04.01.2024)
Published in Frontiers in Marine Science (04.01.2024)
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Journal Article
On the interpretation of changes in the subtropical oxygen minimum zone volume off Chile during two La Niña events (2001 and 2007)
Pizarro-Koch, Matías, Pizarro, Oscar, Dewitte, Boris, Montes, Ivonne, Paulmier, Aurélien, Garçon, Véronique, Sepulveda, Hector Hito, Corredor-Acosta, Andrea, Aguirre, Catalina, Ramos, Marcel
Published in Frontiers in Marine Science (04.07.2023)
Published in Frontiers in Marine Science (04.07.2023)
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Journal Article
HGNChelper: identification and correction of invalid gene symbols for human and mouse [version 1; peer review: 2 approved, 1 approved with reservations]
Oh, Sehyun, Abdelnabi, Jasmine, Al-Dulaimi, Ragheed, Aggarwal, Ayush, Ramos, Marcel, Davis, Sean, Riester, Markus, Waldron, Levi
Published in F1000 research (2020)
Published in F1000 research (2020)
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Journal Article
Dynamics of seasonal and interannual variability of the Peru-Chile Undercurrent
Pizarro, Oscar, Shaffer, Gary, Dewitte, Boris, Ramos, Marcel
Published in Geophysical research letters (01.06.2002)
Published in Geophysical research letters (01.06.2002)
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Journal Article
Orchestrating a community-developed computational workshop and accompanying training materials [version 1; peer review: 2 approved]
Davis, Sean, Ramos, Marcel, Shepherd, Lori, Turaga, Nitesh, Geistlinger, Ludwig, Morgan, Martin T, Haibe-Kains, Benjamin, Waldron, Levi
Published in F1000 research (2018)
Published in F1000 research (2018)
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Journal Article
Seasonal variability of the permanent thermocline off northern Chile
Ramos, Marcel, Pizarro, Oscar, Bravo, Luis, Dewitte, Boris
Published in Geophysical research letters (01.05.2006)
Published in Geophysical research letters (01.05.2006)
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Journal Article
Accessible, curated metagenomic data through ExperimentHub
Pasolli, Edoardo, Schiffer, Lucas, Manghi, Paolo, Renson, Audrey, Obenchain, Valerie, Truong, Duy Tin, Beghini, Francesco, Malik, Faizan, Ramos, Marcel, Dowd, Jennifer B, Huttenhower, Curtis, Morgan, Martin, Segata, Nicola, Waldron, Levi
Published in Nature methods (01.11.2017)
Published in Nature methods (01.11.2017)
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Journal Article
RaggedExperiment: the missing link between genomic ranges and matrices in Bioconductor
Ramos, Marcel, Morgan, Martin, Geistlinger, Ludwig, Carey, Vincent J, Waldron, Levi
Published in Bioinformatics (Oxford, England) (01.06.2023)
Published in Bioinformatics (Oxford, England) (01.06.2023)
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Journal Article