Functional microRNA targets in protein coding sequences
RECZKO, Martin, MARAGKAKIS, Manolis, ALEXIOU, Panagiotis, GROSSE, Ivo, HATZIGEORGIOU, Artemis G
Published in Bioinformatics (Oxford, England) (15.03.2012)
Published in Bioinformatics (Oxford, England) (15.03.2012)
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Journal Article
DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs
Paraskevopoulou, Maria D, Georgakilas, Georgios, Kostoulas, Nikos, Reczko, Martin, Maragkakis, Manolis, Dalamagas, Theodore M, Hatzigeorgiou, Artemis G
Published in Nucleic acids research (01.01.2013)
Published in Nucleic acids research (01.01.2013)
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Journal Article
Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis
Vourekas, Anastassios, Zheng, Qi, Alexiou, Panagiotis, Maragkakis, Manolis, Kirino, Yohei, Gregory, Brian D, Mourelatos, Zissimos
Published in Nature structural & molecular biology (01.08.2012)
Published in Nature structural & molecular biology (01.08.2012)
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Journal Article
Retention of CD19 intron 2 contributes to CART-19 resistance in leukemias with subclonal frameshift mutations in CD19
Asnani, Mukta, Hayer, Katharina E., Naqvi, Ammar S., Zheng, Sisi, Yang, Scarlett Y., Oldridge, Derek, Ibrahim, Fadia, Maragkakis, Manolis, Gazzara, Matthew R., Black, Kathryn L., Bagashev, Asen, Taylor, Deanne, Mourelatos, Zissimos, Grupp, Stephan A., Barrett, David, Maris, John M., Sotillo, Elena, Barash, Yoseph, Thomas-Tikhonenko, Andrei
Published in Leukemia (01.04.2020)
Published in Leukemia (01.04.2020)
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Journal Article
The RNA helicase MOV10L1 binds piRNA precursors to initiate piRNA processing
Vourekas, Anastassios, Zheng, Ke, Fu, Qi, Maragkakis, Manolis, Alexiou, Panagiotis, Ma, Jing, Pillai, Ramesh S, Mourelatos, Zissimos, Wang, P Jeremy
Published in Genes & development (15.03.2015)
Published in Genes & development (15.03.2015)
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Journal Article
CLIPSeqTools--a novel bioinformatics CLIP-seq analysis suite
Maragkakis, Manolis, Alexiou, Panagiotis, Nakaya, Tadashi, Mourelatos, Zissimos
Published in RNA (Cambridge) (01.01.2016)
Published in RNA (Cambridge) (01.01.2016)
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Journal Article
The MOV10 RNA helicase is a dosage-dependent host restriction factor for LINE1 retrotransposition in mice
Guan, Yongjuan, Gao, Hongyan, Leu, N Adrian, Vourekas, Anastassios, Alexiou, Panagiotis, Maragkakis, Manolis, Kang, Zhenlong, Mourelatos, Zissimos, Liang, Guanxiang, Wang, P Jeremy
Published in PLoS genetics (01.05.2023)
Published in PLoS genetics (01.05.2023)
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Journal Article
Kc167, a widely used Drosophila cell line, contains an active primary piRNA pathway
Vrettos, Nicholas, Maragkakis, Manolis, Alexiou, Panagiotis, Mourelatos, Zissimos
Published in RNA (Cambridge) (01.01.2017)
Published in RNA (Cambridge) (01.01.2017)
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Journal Article
Gene body DNA hydroxymethylation restricts the magnitude of transcriptional changes during aging
Occean, James R., Yang, Na, Sun, Yan, Dawkins, Marshall S., Munk, Rachel, Belair, Cedric, Dar, Showkat, Anerillas, Carlos, Wang, Lin, Shi, Changyou, Dunn, Christopher, Bernier, Michel, Price, Nathan L., Kim, Julie S., Cui, Chang-Yi, Fan, Jinshui, Bhattacharyya, Moitrayee, De, Supriyo, Maragkakis, Manolis, de Cabo, Rafael, Sidoli, Simone, Sen, Payel
Published in Nature communications (28.07.2024)
Published in Nature communications (28.07.2024)
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Journal Article
Accurate microRNA target prediction correlates with protein repression levels
Maragkakis, Manolis, Alexiou, Panagiotis, Papadopoulos, Giorgio L, Reczko, Martin, Dalamagas, Theodore, Giannopoulos, George, Goumas, George, Koukis, Evangelos, Kourtis, Kornilios, Simossis, Victor A, Sethupathy, Praveen, Vergoulis, Thanasis, Koziris, Nectarios, Sellis, Timos, Tsanakas, Panagiotis, Hatzigeorgiou, Artemis G
Published in BMC bioinformatics (18.09.2009)
Published in BMC bioinformatics (18.09.2009)
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Journal Article
Mitochondrial protein BmPAPI modulates the length of mature piRNAs
Honda, Shozo, Kirino, Yoriko, Maragkakis, Manolis, Alexiou, Panagiotis, Ohtaki, Akashi, Murali, Ramachandran, Mourelatos, Zissimos, Kirino, Yohei
Published in RNA (Cambridge) (01.10.2013)
Published in RNA (Cambridge) (01.10.2013)
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Journal Article
The DIANA-mirExTra web server: from gene expression data to microRNA function
Alexiou, Panagiotis, Maragkakis, Manolis, Papadopoulos, Giorgio L, Simmosis, Victor A, Zhang, Lin, Hatzigeorgiou, Artemis G
Published in PloS one (11.02.2010)
Published in PloS one (11.02.2010)
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Journal Article
Identification of In Vivo, Conserved, TAF15 RNA Binding Sites Reveals the Impact of TAF15 on the Neuronal Transcriptome
Ibrahim, Fadia, Maragkakis, Manolis, Alexiou, Panagiotis, Maronski, Margaret A., Dichter, Marc A., Mourelatos, Zissimos
Published in Cell reports (Cambridge) (21.02.2013)
Published in Cell reports (Cambridge) (21.02.2013)
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Journal Article
TERA-Seq: true end-to-end sequencing of native RNA molecules for transcriptome characterization
Ibrahim, Fadia, Oppelt, Jan, Maragkakis, Manolis, Mourelatos, Zissimos
Published in Nucleic acids research (18.11.2021)
Published in Nucleic acids research (18.11.2021)
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Journal Article
DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways
Vlachos, Ioannis S, Kostoulas, Nikos, Vergoulis, Thanasis, Georgakilas, Georgios, Reczko, Martin, Maragkakis, Manolis, Paraskevopoulou, Maria D, Prionidis, Kostantinos, Dalamagas, Theodore, Hatzigeorgiou, Artemis G
Published in Nucleic acids research (01.07.2012)
Published in Nucleic acids research (01.07.2012)
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