TbD1 deletion as a driver of the evolutionary success of modern epidemic Mycobacterium tuberculosis lineages
Bottai, Daria, Frigui, Wafa, Sayes, Fadel, Di Luca, Mariagrazia, Spadoni, Dalila, Pawlik, Alexandre, Zoppo, Marina, Orgeur, Mickael, Khanna, Varun, Hardy, David, Mangenot, Sophie, Barbe, Valerie, Medigue, Claudine, Ma, Laurence, Bouchier, Christiane, Tavanti, Arianna, Larrouy-Maumus, Gerald, Brosch, Roland
Published in Nature communications (04.02.2020)
Published in Nature communications (04.02.2020)
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Azospirillum genomes reveal transition of bacteria from aquatic to terrestrial environments
Wisniewski-Dyé, Florence, Borziak, Kirill, Khalsa-Moyers, Gurusahai, Alexandre, Gladys, Sukharnikov, Leonid O, Wuichet, Kristin, Hurst, Gregory B, McDonald, W Hayes, Robertson, Jon S, Barbe, Valérie, Calteau, Alexandra, Rouy, Zoé, Mangenot, Sophie, Prigent-Combaret, Claire, Normand, Philippe, Boyer, Mickaël, Siguier, Patricia, Dessaux, Yves, Elmerich, Claudine, Condemine, Guy, Krishnen, Ganisan, Kennedy, Ivan, Paterson, Andrew H, González, Victor, Mavingui, Patrick, Zhulin, Igor B
Published in PLoS genetics (01.12.2011)
Published in PLoS genetics (01.12.2011)
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Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence
Remenant, Benoît, Coupat-Goutaland, Bénédicte, Guidot, Alice, Cellier, Gilles, Wicker, Emmanuel, Allen, Caitilyn, Fegan, Mark, Pruvost, Olivier, Elbaz, Mounira, Calteau, Alexandra, Salvignol, Gregory, Mornico, Damien, Mangenot, Sophie, Barbe, Valérie, Médigue, Claudine, Prior, Philippe
Published in BMC genomics (15.06.2010)
Published in BMC genomics (15.06.2010)
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A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation
Acemel, Rafael D, Tena, Juan J, Irastorza-Azcarate, Ibai, Marlétaz, Ferdinand, Gómez-Marín, Carlos, de la Calle-Mustienes, Elisa, Bertrand, Stéphanie, Diaz, Sergio G, Aldea, Daniel, Aury, Jean-Marc, Mangenot, Sophie, Holland, Peter W H, Devos, Damien P, Maeso, Ignacio, Escrivá, Hector, Gómez-Skarmeta, José Luis
Published in Nature genetics (01.03.2016)
Published in Nature genetics (01.03.2016)
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Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans-Leptosphaeria biglobosa species complex of fungal pathogens
Grandaubert, Jonathan, Lowe, Rohan G T, Soyer, Jessica L, Schoch, Conrad L, Van de Wouw, Angela P, Fudal, Isabelle, Robbertse, Barbara, Lapalu, Nicolas, Links, Matthew G, Ollivier, Bénédicte, Linglin, Juliette, Barbe, Valérie, Mangenot, Sophie, Cruaud, Corinne, Borhan, Hossein, Howlett, Barbara J, Balesdent, Marie-Hélène, Rouxel, Thierry
Published in BMC genomics (12.10.2014)
Published in BMC genomics (12.10.2014)
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Comparative genomics of multidrug resistance in Acinetobacter baumannii
Fournier, Pierre-Edouard, Vallenet, David, Barbe, Valérie, Audic, Stéphane, Ogata, Hiroyuki, Poirel, Laurent, Richet, Hervé, Robert, Catherine, Mangenot, Sophie, Abergel, Chantal, Nordmann, Patrice, Weissenbach, Jean, Raoult, Didier, Claverie, Jean-Michel
Published in PLoS computational biology (01.01.2006)
Published in PLoS computational biology (01.01.2006)
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Ralstonia syzygii, the Blood Disease Bacterium and some Asian R. solanacearum strains form a single genomic species despite divergent lifestyles
Remenant, Benoît, de Cambiaire, Jean-Charles, Cellier, Gilles, Jacobs, Jonathan M, Mangenot, Sophie, Barbe, Valérie, Lajus, Aurélie, Vallenet, David, Medigue, Claudine, Fegan, Mark, Allen, Caitilyn, Prior, Philippe
Published in PloS one (08.09.2011)
Published in PloS one (08.09.2011)
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Comparative analysis of Acinetobacters: three genomes for three lifestyles
Vallenet, David, Nordmann, Patrice, Barbe, Valérie, Poirel, Laurent, Mangenot, Sophie, Bataille, Elodie, Dossat, Carole, Gas, Shahinaz, Kreimeyer, Annett, Lenoble, Patricia, Oztas, Sophie, Poulain, Julie, Segurens, Béatrice, Robert, Catherine, Abergel, Chantal, Claverie, Jean-Michel, Raoult, Didier, Médigue, Claudine, Weissenbach, Jean, Cruveiller, Stéphane
Published in PloS one (19.03.2008)
Published in PloS one (19.03.2008)
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Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources
Vuilleumier, Stéphane, Chistoserdova, Ludmila, Lee, Ming-Chun, Bringel, Françoise, Lajus, Aurélie, Zhou, Yang, Gourion, Benjamin, Barbe, Valérie, Chang, Jean, Cruveiller, Stéphane, Dossat, Carole, Gillett, Will, Gruffaz, Christelle, Haugen, Eric, Hourcade, Edith, Levy, Ruth, Mangenot, Sophie, Muller, Emilie, Nadalig, Thierry, Pagni, Marco, Penny, Christian, Peyraud, Rémi, Robinson, David G, Roche, David, Rouy, Zoé, Saenampechek, Channakhone, Salvignol, Grégory, Vallenet, David, Wu, Zaining, Marx, Christopher J, Vorholt, Julia A, Olson, Maynard V, Kaul, Rajinder, Weissenbach, Jean, Médigue, Claudine, Lidstrom, Mary E
Published in PloS one (18.05.2009)
Published in PloS one (18.05.2009)
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The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae
Pieretti, Isabelle, Royer, Monique, Barbe, Valérie, Carrere, Sébastien, Koebnik, Ralf, Cociancich, Stéphane, Couloux, Arnaud, Darrasse, Armelle, Gouzy, Jérôme, Jacques, Marie-Agnès, Lauber, Emmanuelle, Manceau, Charles, Mangenot, Sophie, Poussier, Stéphane, Segurens, Béatrice, Szurek, Boris, Verdier, Valérie, Arlat, Matthieu, Rott, Philippe
Published in BMC genomics (17.12.2009)
Published in BMC genomics (17.12.2009)
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Contrasted patterns of molecular evolution in dominant and recessive self-incompatibility haplotypes in Arabidopsis
Goubet, Pauline M, Bergès, Hélène, Bellec, Arnaud, Prat, Elisa, Helmstetter, Nicolas, Mangenot, Sophie, Gallina, Sophie, Holl, Anne-Catherine, Fobis-Loisy, Isabelle, Vekemans, Xavier, Castric, Vincent
Published in PLoS genetics (01.03.2012)
Published in PLoS genetics (01.03.2012)
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Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome
Sirand-Pugnet, Pascal, Lartigue, Carole, Marenda, Marc, Jacob, Daniel, Barré, Aurélien, Barbe, Valérie, Schenowitz, Chantal, Mangenot, Sophie, Couloux, Arnaud, Segurens, Beatrice, de Daruvar, Antoine, Blanchard, Alain, Citti, Christine
Published in PLoS genetics (01.05.2007)
Published in PLoS genetics (01.05.2007)
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Complete Genome Sequence of Streptomyces cattleya NRRL 8057, a Producer of Antibiotics and Fluorometabolites
BARBE, Valerie, BOUZON, Madeleine, MANGENOT, Sophie, BADET, Bernard, POULAIN, Julie, SEGURENS, Beatrice, VALLENET, David, MARLIERE, Philippe, WEISSENBACH, Jean
Published in Journal of Bacteriology (01.09.2011)
Published in Journal of Bacteriology (01.09.2011)
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Analysis of the P. lividus sea urchin genome highlights contrasting trends of genomic and regulatory evolution in deuterostomes
Marlétaz, Ferdinand, Couloux, Arnaud, Poulain, Julie, Labadie, Karine, Da Silva, Corinne, Mangenot, Sophie, Noel, Benjamin, Poustka, Albert J., Dru, Philippe, Pegueroles, Cinta, Borra, Marco, Lowe, Elijah K., Lhomond, Guy, Besnardeau, Lydia, Le Gras, Stéphanie, Ye, Tao, Gavriouchkina, Daria, Russo, Roberta, Costa, Caterina, Zito, Francesca, Anello, Letizia, Nicosia, Aldo, Ragusa, Maria Antonietta, Pascual, Marta, Molina, M. Dolores, Chessel, Aline, Di Carlo, Marta, Turon, Xavier, Copley, Richard R., Exposito, Jean-Yves, Martinez, Pedro, Cavalieri, Vincenzo, Ben Tabou de Leon, Smadar, Croce, Jenifer, Oliveri, Paola, Matranga, Valeria, Di Bernardo, Maria, Morales, Julia, Cormier, Patrick, Geneviève, Anne-Marie, Aury, Jean Marc, Barbe, Valérie, Wincker, Patrick, Arnone, Maria Ina, Gache, Christian, Lepage, Thierry
Published in Cell genomics (12.04.2023)
Published in Cell genomics (12.04.2023)
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Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo identifies virulence-associated traits
Goudenège, David, Labreuche, Yannick, Krin, Evelyne, Ansquer, Dominique, Mangenot, Sophie, Calteau, Alexandra, Médigue, Claudine, Mazel, Didier, Polz, Martin F, Le Roux, Frédérique
Published in The ISME Journal (01.10.2013)
Published in The ISME Journal (01.10.2013)
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Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels
Pieretti, Isabelle, Royer, Monique, Barbe, Valérie, Carrere, Sébastien, Koebnik, Ralf, Couloux, Arnaud, Darrasse, Armelle, Gouzy, Jérôme, Jacques, Marie-Agnès, Lauber, Emmanuelle, Manceau, Charles, Mangenot, Sophie, Poussier, Stéphane, Segurens, Béatrice, Szurek, Boris, Verdier, Valérie, Arlat, Matthieu, Gabriel, Dean W, Rott, Philippe, Cociancich, Stéphane
Published in BMC genomics (21.11.2012)
Published in BMC genomics (21.11.2012)
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Genome Sequence of the Marine Bacterium Marinobacter hydrocarbonoclasticus SP17, Which Forms Biofilms on Hydrophobic Organic Compounds
Grimaud, Regis, Ghiglione, Jean-François, Cagnon, Christine, Lauga, Béatrice, Vaysse, Pierre-Joseph, Rodriguez-Blanco, Arturo, Mangenot, Sophie, Cruveiller, Stephane, Barbe, Valérie, Duran, Robert, Wu, Long-Fei, Talla, Emmanuel, Bonin, Patricia, Michotey, Valerie
Published in Journal of Bacteriology (01.07.2012)
Published in Journal of Bacteriology (01.07.2012)
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Comparative Genome Analysis Provides Insights into Both the Lifestyle of Acidithiobacillus ferrivorans Strain CF27 and the Chimeric Nature of the Iron-Oxidizing Acidithiobacilli Genomes
Tran, Tam T T, Mangenot, Sophie, Magdelenat, Ghislaine, Payen, Emilie, Rouy, Zoé, Belahbib, Hassiba, Grail, Barry M, Johnson, D Barrie, Bonnefoy, Violaine, Talla, Emmanuel
Published in Frontiers in microbiology (13.06.2017)
Published in Frontiers in microbiology (13.06.2017)
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Genomic adaptation of the picoeukaryote Pelagomonas calceolata to iron-poor oceans revealed by a chromosome-scale genome sequence
Guérin, Nina, Ciccarella, Marta, Flamant, Elisa, Frémont, Paul, Mangenot, Sophie, Istace, Benjamin, Noel, Benjamin, Belser, Caroline, Bertrand, Laurie, Labadie, Karine, Cruaud, Corinne, Romac, Sarah, Bachy, Charles, Gachenot, Martin, Pelletier, Eric, Alberti, Adriana, Jaillon, Olivier, Wincker, Patrick, Aury, Jean-Marc, Carradec, Quentin
Published in Communications biology (16.09.2022)
Published in Communications biology (16.09.2022)
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Genome Sequence of the Haloalkaliphilic Methanotrophic Bacterium Methylomicrobium alcaliphilum 20Z
Vuilleumier, Stéphane, Khmelenina, Valentina N, Bringel, Françoise, Reshetnikov, Alexandr S, Lajus, Aurélie, Mangenot, Sophie, Rouy, Zoé, Op den Camp, Huub J. M, Jetten, Mike S. M, Dispirito, Alan A, Dunfield, Peter, Klotz, Martin G, Semrau, Jeremy D, Stein, Lisa Y, Barbe, Valérie, Médigue, Claudine, Trotsenko, Yuri A, Kalyuzhnaya, Marina G
Published in Journal of Bacteriology (01.01.2012)
Published in Journal of Bacteriology (01.01.2012)
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