Genome-wide identification of bacterial plant colonization genes
Cole, Benjamin J, Feltcher, Meghan E, Waters, Robert J, Wetmore, Kelly M, Mucyn, Tatiana S, Ryan, Elizabeth M, Wang, Gaoyan, Ul-Hasan, Sabah, McDonald, Meredith, Yoshikuni, Yasuo, Malmstrom, Rex R, Deutschbauer, Adam M, Dangl, Jeffery L, Visel, Axel
Published in PLoS biology (22.09.2017)
Published in PLoS biology (22.09.2017)
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Journal Article
The Epigenomic Landscape of Prokaryotes
Blow, Matthew J, Clark, Tyson A, Daum, Chris G, Deutschbauer, Adam M, Fomenkov, Alexey, Fries, Roxanne, Froula, Jeff, Kang, Dongwan D, Malmstrom, Rex R, Morgan, Richard D, Posfai, Janos, Singh, Kanwar, Visel, Axel, Wetmore, Kelly, Zhao, Zhiying, Rubin, Edward M, Korlach, Jonas, Pennacchio, Len A, Roberts, Richard J
Published in PLoS genetics (12.02.2016)
Published in PLoS genetics (12.02.2016)
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Journal Article
Hidden diversity of soil giant viruses
Schulz, Frederik, Alteio, Lauren, Goudeau, Danielle, Ryan, Elizabeth M, Yu, Feiqiao B, Malmstrom, Rex R, Blanchard, Jeffrey, Woyke, Tanja
Published in Nature communications (19.11.2018)
Published in Nature communications (19.11.2018)
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Journal Article
Probing the active fraction of soil microbiomes using BONCAT-FACS
Couradeau, Estelle, Sasse, Joelle, Goudeau, Danielle, Nath, Nandita, Hazen, Terry C, Bowen, Ben P, Chakraborty, Romy, Malmstrom, Rex R, Northen, Trent R
Published in Nature communications (24.06.2019)
Published in Nature communications (24.06.2019)
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Journal Article
Visualizing in situ translational activity for identifying and sorting slow-growing archaeal–bacterial consortia
Hatzenpichler, Roland, Connon, Stephanie A., Goudeau, Danielle, Malmstrom, Rex R., Woyke, Tanja, Orphan, Victoria J.
Published in Proceedings of the National Academy of Sciences - PNAS (12.07.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (12.07.2016)
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Journal Article
A centimeter-long bacterium with DNA contained in metabolically active, membrane-bound organelles
Volland, Jean-Marie, Gonzalez-Rizzo, Silvina, Gros, Olivier, Tyml, Tomáš, Ivanova, Natalia, Schulz, Frederik, Goudeau, Danielle, Elisabeth, Nathalie H., Nath, Nandita, Udwary, Daniel, Malmstrom, Rex R., Guidi-Rontani, Chantal, Bolte-Kluge, Susanne, Davies, Karen M., Jean, Maïtena R., Mansot, Jean-Louis, Mouncey, Nigel J., Angert, Esther R., Woyke, Tanja, Date, Shailesh V.
Published in Science (American Association for the Advancement of Science) (24.06.2022)
Published in Science (American Association for the Advancement of Science) (24.06.2022)
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Journal Article
Whole genome amplification and de novo assembly of single bacterial cells
Rodrigue, Sébastien, Malmstrom, Rex R, Berlin, Aaron M, Birren, Bruce W, Henn, Matthew R, Chisholm, Sallie W
Published in PloS one (02.09.2009)
Published in PloS one (02.09.2009)
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Journal Article
Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus
Kashtan, Nadav, Roggensack, Sara E., Rodrigue, Sébastien, Thompson, Jessie W., Biller, Steven J., Coe, Allison, Ding, Huiming, Marttinen, Pekka, Malmstrom, Rex R., Stocker, Roman, Follows, Michael J., Stepanauskas, Ramunas, Chisholm, Sallie W.
Published in Science (American Association for the Advancement of Science) (25.04.2014)
Published in Science (American Association for the Advancement of Science) (25.04.2014)
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Journal Article
Niche differentiation is spatially and temporally regulated in the rhizosphere
Nuccio, Erin E, Starr, Evan, Karaoz, Ulas, Brodie, Eoin L, Zhou, Jizhong, Tringe, Susannah G, Malmstrom, Rex R, Woyke, Tanja, Banfield, Jillian F, Firestone, Mary K, Pett-Ridge, Jennifer
Published in The ISME Journal (01.04.2020)
Published in The ISME Journal (01.04.2020)
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Journal Article
A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators
Needham, David M., Yoshizawa, Susumu, Hosaka, Toshiaki, Poirier, Camille, Choi, Chang Jae, Hehenberger, Elisabeth, Irwin, Nicholas A. T., Wilken, Susanne, Yung, Cheuk-Man, Charles Bachy, Rika Kurihara, Nakajima, Yu, Kojima, Keiichi, Kimura-Someya, Tomomi, Leonard, Guy, Malmstrom, Rex R., Mende, Daniel R., Olson, Daniel K., Sudo, Yuki, Sudek, Sebastian, Richards, Thomas A., DeLong, Edward F., Keeling, Patrick J., Santoro, Alyson E., Shirouzu, Mikako, Iwasaki, Wataru, Worden, Alexandra Z.
Published in Proceedings of the National Academy of Sciences - PNAS (08.10.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (08.10.2019)
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Journal Article
Genome-wide fitness profiling reveals molecular mechanisms that bacteria use to interact with Trichoderma atroviride exometabolites
Villalobos-Escobedo, José Manuel, Mercado-Esquivias, Maria Belen, Adams, Catharine, Kauffman, W. Berkeley, Malmstrom, Rex R, Deutschbauer, Adam M, Glass, N. Louise
Published in PLoS genetics (31.08.2023)
Published in PLoS genetics (31.08.2023)
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Journal Article
Unlocking short read sequencing for metagenomics
Rodrigue, Sébastien, Materna, Arne C, Timberlake, Sonia C, Blackburn, Matthew C, Malmstrom, Rex R, Alm, Eric J, Chisholm, Sallie W
Published in PloS one (28.07.2010)
Published in PloS one (28.07.2010)
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Journal Article
Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea
McCarren, Jay, Becker, Jamie W., Repeta, Daniel J., Shi, Yanmei, Young, Curtis R., Malmstrom, Rex R., Chisholm, Sallie W., DeLong, Edward F.
Published in Proceedings of the National Academy of Sciences - PNAS (21.09.2010)
Published in Proceedings of the National Academy of Sciences - PNAS (21.09.2010)
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Journal Article
Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations
Bendall, Matthew L, Stevens, Sarah Lr, Chan, Leong-Keat, Malfatti, Stephanie, Schwientek, Patrick, Tremblay, Julien, Schackwitz, Wendy, Martin, Joel, Pati, Amrita, Bushnell, Brian, Froula, Jeff, Kang, Dongwan, Tringe, Susannah G, Bertilsson, Stefan, Moran, Mary A, Shade, Ashley, Newton, Ryan J, McMahon, Katherine D, Malmstrom, Rex R
Published in The ISME Journal (01.07.2016)
Published in The ISME Journal (01.07.2016)
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Journal Article
SAR11 bacteria linked to ocean anoxia and nitrogen loss
Tsementzi, Despina, Wu, Jieying, Deutsch, Samuel, Nath, Sangeeta, Rodriguez-R, Luis M, Burns, Andrew S, Ranjan, Piyush, Sarode, Neha, Malmstrom, Rex R, Padilla, Cory C, Stone, Benjamin K, Bristow, Laura A, Larsen, Morten, Glass, Jennifer B, Thamdrup, Bo, Woyke, Tanja, Konstantinidis, Konstantinos T, Stewart, Frank J
Published in Nature (London) (11.08.2016)
Published in Nature (London) (11.08.2016)
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Journal Article
Multicellular magnetotactic bacteria are genetically heterogeneous consortia with metabolically differentiated cells
Schaible, George A., Jay, Zackary J., Cliff, John, Schulz, Frederik, Gauvin, Colin, Goudeau, Danielle, Malmstrom, Rex R., Ruff, S. Emil, Edgcomb, Virginia, Hatzenpichler, Roland
Published in PLoS biology (11.07.2024)
Published in PLoS biology (11.07.2024)
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Journal Article
Decontamination of MDA reagents for single cell whole genome amplification
Woyke, Tanja, Sczyrba, Alexander, Lee, Janey, Rinke, Christian, Tighe, Damon, Clingenpeel, Scott, Malmstrom, Rex, Stepanauskas, Ramunas, Cheng, Jan-Fang
Published in PloS one (20.10.2011)
Published in PloS one (20.10.2011)
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Journal Article
Comparative genomics reveals electron transfer and syntrophic mechanisms differentiating methanotrophic and methanogenic archaea
Chadwick, Grayson L, Skennerton, Connor T, Laso-Pérez, Rafael, Leu, Andy O, Speth, Daan R, Yu, Hang, Morgan-Lang, Connor, Hatzenpichler, Roland, Goudeau, Danielle, Malmstrom, Rex, Brazelton, William J, Woyke, Tanja, Hallam, Steven J, Tyson, Gene W, Wegener, Gunter, Boetius, Antje, Orphan, Victoria J
Published in PLoS biology (05.01.2022)
Published in PLoS biology (05.01.2022)
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Journal Article