The Cancer Genomics Cloud: Collaborative, Reproducible, and Democratized-A New Paradigm in Large-Scale Computational Research
Lau, Jessica W, Lehnert, Erik, Sethi, Anurag, Malhotra, Raunaq, Kaushik, Gaurav, Onder, Zeynep, Groves-Kirkby, Nick, Mihajlovic, Aleksandar, DiGiovanna, Jack, Srdic, Mladen, Bajcic, Dragan, Radenkovic, Jelena, Mladenovic, Vladimir, Krstanovic, Damir, Arsenijevic, Vladan, Klisic, Djordje, Mitrovic, Milan, Bogicevic, Igor, Kural, Deniz, Davis-Dusenbery, Brandi
Published in Cancer research (Chicago, Ill.) (01.11.2017)
Published in Cancer research (Chicago, Ill.) (01.11.2017)
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Journal Article
Computational and Statistical Analyses of Insertional Polymorphic Endogenous Retroviruses in a Non-Model Organism
Bao, Le, Elleder, Daniel, Malhotra, Raunaq, DeGiorgio, Michael, Maravegias, Theodora, Horvath, Lindsay, Carrel, Laura, Gillin, Colin, Hron, Tomas, Fabryova, Helena
Published in Computation (2014)
Published in Computation (2014)
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Journal Article
Recombination Marks the Evolutionary Dynamics of a Recently Endogenized Retrovirus
Yang, Lei, Malhotra, Raunaq, Chikhi, Rayan, Elleder, Daniel, Kaiser, Theodora, Rong, Jesse, Medvedev, Paul, Poss, Mary
Published in Molecular biology and evolution (09.12.2021)
Published in Molecular biology and evolution (09.12.2021)
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Journal Article
ViPRA-Haplo: De Novo Reconstruction of Viral Populations Using Paired End Sequencing Data
Li, Weiling, Malhotra, Raunaq, Wu, Steven, Jha, Manjari, Rodrigo, Allen, Poss, Mary, Acharya, Raj
Published in IEEE/ACM transactions on computational biology and bioinformatics (01.05.2024)
Published in IEEE/ACM transactions on computational biology and bioinformatics (01.05.2024)
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Journal Article
Mining the infant gut microbiota for therapeutic targets against atopic disease
Boutin, Rozlyn C. T., Sbihi, Hind, Dsouza, Melissa, Malhotra, Raunaq, Petersen, Charisse, Dai, Darlene, Sears, Malcolm R., Moraes, Theo J., Becker, Allan B., Azad, Meghan B., Mandhane, Piush J., Subbarao, Padmaja, Finlay, B. Brett, Turvey, Stuart E.
Published in Allergy (Copenhagen) (01.08.2020)
Published in Allergy (Copenhagen) (01.08.2020)
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Journal Article
QuagmiR: a cloud-based application for isomiR big data analytics
Bofill-De Ros, Xavier, Chen, Kevin, Chen, Susanna, Tesic, Nikola, Randjelovic, Dusan, Skundric, Nikola, Nesic, Svetozar, Varjacic, Vojislav, Williams, Elizabeth H, Malhotra, Raunaq, Jiang, Minjie, Gu, Shuo
Published in Bioinformatics (Oxford, England) (01.05.2019)
Published in Bioinformatics (Oxford, England) (01.05.2019)
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Journal Article
Abstract 2348: Low-cost and accurate human leukocyte antigen (HLA) class I typing of The Cancer Genome Atlas on the Seven Bridges Cancer Genomics Cloud
Malhotra, Raunaq, Krasnitz, Alexandar, Sethi, Anurag, Lehnert, Erik, Williams, Elizabeth H., Brandi, Davis-Dusenbery N.
Published in Cancer research (Chicago, Ill.) (01.07.2018)
Published in Cancer research (Chicago, Ill.) (01.07.2018)
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Journal Article
Error correction and statistical analyses for intra-host comparisons of feline immunodeficiency virus diversity from high-throughput sequencing data
Liu, Yang, Chiaromonte, Francesca, Ross, Howard, Malhotra, Raunaq, Elleder, Daniel, Poss, Mary
Published in BMC bioinformatics (30.06.2015)
Published in BMC bioinformatics (30.06.2015)
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Journal Article
Footfall Induced Vibration Response of a Base-Isolated Steel Building
MacRae, Gregory A., Broglio, Sara, Palermo, Alessandro, Malhotra, Raunaq, Ndarowa, Caleb
Published in Key engineering materials (01.02.2018)
Published in Key engineering materials (01.02.2018)
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Journal Article
Using the Seven Bridges Cancer Genomics Cloud to Access and Analyze Petabytes of Cancer Data
Malhotra, Raunaq, Seth, Isheeta, Lehnert, Erik, Zhao, Jing, Kaushik, Gaurav, Williams, Elizabeth H, Sethi, Anurag, Davis-Dusenbery, Brandi N
Published in Current protocols in bioinformatics (08.12.2017)
Published in Current protocols in bioinformatics (08.12.2017)
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