An APOBEC3A hypermutation signature is distinguishable from the signature of background mutagenesis by APOBEC3B in human cancers
Chan, Kin, Roberts, Steven A, Klimczak, Leszek J, Sterling, Joan F, Saini, Natalie, Malc, Ewa P, Kim, Jaegil, Kwiatkowski, David J, Fargo, David C, Mieczkowski, Piotr A, Getz, Gad, Gordenin, Dmitry A
Published in Nature genetics (01.09.2015)
Published in Nature genetics (01.09.2015)
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Long transposon-rich centromeres in an oomycete reveal divergence of centromere features in Stramenopila-Alveolata-Rhizaria lineages
Fang, Yufeng, Coelho, Marco A, Shu, Haidong, Schotanus, Klaas, Thimmappa, Bhagya C, Yadav, Vikas, Chen, Han, Malc, Ewa P, Wang, Jeremy, Mieczkowski, Piotr A, Kronmiller, Brent, Tyler, Brett M, Sanyal, Kaustuv, Dong, Suomeng, Nowrousian, Minou, Heitman, Joseph
Published in PLoS genetics (09.03.2020)
Published in PLoS genetics (09.03.2020)
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Repair of multiple simultaneous double-strand breaks causes bursts of genome-wide clustered hypermutation
Sakofsky, Cynthia J, Saini, Natalie, Klimczak, Leszek J, Chan, Kin, Malc, Ewa P, Mieczkowski, Piotr A, Burkholder, Adam B, Fargo, David, Gordenin, Dmitry A
Published in PLoS biology (30.09.2019)
Published in PLoS biology (30.09.2019)
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Journal Article
The Impact of Environmental and Endogenous Damage on Somatic Mutation Load in Human Skin Fibroblasts
Saini, Natalie, Roberts, Steven A, Klimczak, Leszek J, Chan, Kin, Grimm, Sara A, Dai, Shuangshuang, Fargo, David C, Boyer, Jayne C, Kaufmann, William K, Taylor, Jack A, Lee, Eunjung, Cortes-Ciriano, Isidro, Park, Peter J, Schurman, Shepherd H, Malc, Ewa P, Mieczkowski, Piotr A, Gordenin, Dmitry A
Published in PLoS genetics (27.10.2016)
Published in PLoS genetics (27.10.2016)
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Journal Article
Tracking replication enzymology in vivo by genome-wide mapping of ribonucleotide incorporation
Clausen, Anders R, Lujan, Scott A, Burkholder, Adam B, Orebaugh, Clinton D, Williams, Jessica S, Clausen, Maryam F, Malc, Ewa P, Mieczkowski, Piotr A, Fargo, David C, Smith, Duncan J, Kunkel, Thomas A
Published in Nature structural & molecular biology (01.03.2015)
Published in Nature structural & molecular biology (01.03.2015)
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Journal Article
Genome-wide maps of alkylation damage, repair, and mutagenesis in yeast reveal mechanisms of mutational heterogeneity
Mao, Peng, Brown, Alexander J, Malc, Ewa P, Mieczkowski, Piotr A, Smerdon, Michael J, Roberts, Steven A, Wyrick, John J
Published in Genome research (01.10.2017)
Published in Genome research (01.10.2017)
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Journal Article
Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition
Lujan, Scott A, Clausen, Anders R, Clark, Alan B, MacAlpine, Heather K, MacAlpine, David M, Malc, Ewa P, Mieczkowski, Piotr A, Burkholder, Adam B, Fargo, David C, Gordenin, Dmitry A, Kunkel, Thomas A
Published in Genome research (01.11.2014)
Published in Genome research (01.11.2014)
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Journal Article
Clustered Mutations in Yeast and in Human Cancers Can Arise from Damaged Long Single-Strand DNA Regions
Roberts, Steven A., Sterling, Joan, Thompson, Cole, Harris, Shawn, Mav, Deepak, Shah, Ruchir, Klimczak, Leszek J., Kryukov, Gregory V., Malc, Ewa, Mieczkowski, Piotr A., Resnick, Michael A., Gordenin, Dmitry A.
Published in Molecular cell (25.05.2012)
Published in Molecular cell (25.05.2012)
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Journal Article
Mutation signatures specific to DNA alkylating agents in yeast and cancers
Saini, Natalie, Sterling, Joan F, Sakofsky, Cynthia J, Giacobone, Camille K, Klimczak, Leszek J, Burkholder, Adam B, Malc, Ewa P, Mieczkowski, Piotr A, Gordenin, Dmitry A
Published in Nucleic acids research (17.04.2020)
Published in Nucleic acids research (17.04.2020)
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Journal Article
Cavitation Enhancing Nanodroplets Mediate Efficient DNA Fragmentation in a Bench Top Ultrasonic Water Bath
Kasoji, Sandeep K, Pattenden, Samantha G, Malc, Ewa P, Jayakody, Chatura N, Tsuruta, James K, Mieczkowski, Piotr A, Janzen, William P, Dayton, Paul A
Published in PloS one (17.07.2015)
Published in PloS one (17.07.2015)
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Journal Article
Characterization of systemic genomic instability in budding yeast
Sampaio, Nadia M. V., Ajith, V. P., Watson, Ruth A., Heasley, Lydia R., Chakraborty, Parijat, Rodrigues-Prause, Aline, Malc, Ewa P., Mieczkowski, Piotr A., Nishant, Koodali T., Argueso, Juan Lucas
Published in Proceedings of the National Academy of Sciences - PNAS (10.11.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (10.11.2020)
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Journal Article
APOBEC3B cytidine deaminase targets the non-transcribed strand of tRNA genes in yeast
Saini, Natalie, Roberts, Steven A., Sterling, Joan F., Malc, Ewa P., Mieczkowski, Piotr A., Gordenin, Dmitry A.
Published in DNA repair (01.05.2017)
Published in DNA repair (01.05.2017)
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Journal Article
Atypical UV Photoproducts Induce Non-canonical Mutation Classes Associated with Driver Mutations in Melanoma
Laughery, Marian F., Brown, Alexander J., Bohm, Kaitlynne A., Sivapragasam, Smitha, Morris, Haley S., Tchmola, Mila, Washington, Angelica D., Mitchell, Debra, Mather, Stephen, Malc, Ewa P., Mieczkowski, Piotr A., Roberts, Steven A., Wyrick, John J.
Published in Cell reports (Cambridge) (17.11.2020)
Published in Cell reports (Cambridge) (17.11.2020)
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Journal Article
Correction: Repair of multiple simultaneous double-strand breaks causes bursts of genome-wide clustered hypermutation
Sakofsky, Cynthia J, Saini, Natalie, Klimczak, Leszek J, Chan, Kin, Malc, Ewa P, Mieczkowski, Piotr A, Burkholder, Adam B, Fargo, David, Gordenin, Dmitry A
Published in PLoS biology (01.03.2020)
Published in PLoS biology (01.03.2020)
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Journal Article
Variant calling in low-coverage whole genome sequencing of a Native American population sample
Bizon, Chris, Spiegel, Michael, Chasse, Scott A, Gizer, Ian R, Li, Yun, Malc, Ewa P, Mieczkowski, Piotr A, Sailsbery, Josh K, Wang, Xiaoshu, Ehlers, Cindy L, Wilhelmsen, Kirk C
Published in BMC genomics (30.01.2014)
Published in BMC genomics (30.01.2014)
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High-resolution genome-wide analysis of irradiated (UV and γ-rays) diploid yeast cells reveals a high frequency of genomic loss of heterozygosity (LOH) events
St Charles, Jordan, Hazkani-Covo, Einat, Yin, Yi, Andersen, Sabrina L, Dietrich, Fred S, Greenwell, Patricia W, Malc, Ewa, Mieczkowski, Piotr, Petes, Thomas D
Published in Genetics (Austin) (01.04.2012)
Published in Genetics (Austin) (01.04.2012)
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Journal Article
Metabolic Potential, Ecology and Presence of Associated Bacteria Is Reflected in Genomic Diversity of Mucoromycotina
Muszewska, Anna, Okrasińska, Alicja, Steczkiewicz, Kamil, Drgas, Olga, Orłowska, Małgorzata, Perlińska-Lenart, Urszula, Aleksandrzak-Piekarczyk, Tamara, Szatraj, Katarzyna, Zielenkiewicz, Urszula, Piłsyk, Sebastian, Malc, Ewa, Mieczkowski, Piotr, Kruszewska, Joanna S, Bernat, Przemysław, Pawłowska, Julia
Published in Frontiers in microbiology (15.02.2021)
Published in Frontiers in microbiology (15.02.2021)
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Journal Article
Corrigendum to “APOBEC3B cytidine deaminase targets the non-transcribed strand of tRNA genes in yeast” [DNA Repair 53 (2017) 4–14]
Saini, Natalie, Roberts, Steven A., Sterling, Joan F., Malc, Ewa P., Mieczkowski, Piotr A., Gordenin, Dmitry A.
Published in DNA repair (01.08.2019)
Published in DNA repair (01.08.2019)
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