An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar
Grubaugh, Nathan D, Gangavarapu, Karthik, Quick, Joshua, Matteson, Nathaniel L, De Jesus, Jaqueline Goes, Main, Bradley J, Tan, Amanda L, Paul, Lauren M, Brackney, Doug E, Grewal, Saran, Gurfield, Nikos, Van Rompay, Koen K A, Isern, Sharon, Michael, Scott F, Coffey, Lark L, Loman, Nicholas J, Andersen, Kristian G
Published in Genome Biology (08.01.2019)
Published in Genome Biology (08.01.2019)
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Journal Article
Impact of temperature on the extrinsic incubation period of Zika virus in Aedes aegypti
Winokur, Olivia C, Main, Bradley J, Nicholson, Jay, Barker, Christopher M
Published in PLoS neglected tropical diseases (01.03.2020)
Published in PLoS neglected tropical diseases (01.03.2020)
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Journal Article
Adaptive introgression in an African malaria mosquito coincident with the increased usage of insecticide-treated bed nets
Norris, Laura C., Main, Bradley J., Lee, Yoosook, Collier, Travis C., Fofana, Abdrahamane, Cornel, Anthony J., Lanzaro, Gregory C.
Published in Proceedings of the National Academy of Sciences - PNAS (20.01.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (20.01.2015)
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Journal Article
Spatiotemporal dynamics of gene flow and hybrid fitness between the M and S forms of the malaria mosquito, Anopheles gambiae
Lee, Yoosook, Marsden, Clare D., Norris, Laura C., Collier, Travis C., Main, Bradley J., Fofana, Abdrahamane, Cornel, Anthony J., Lanzaro, Gregory C.
Published in Proceedings of the National Academy of Sciences - PNAS (03.12.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (03.12.2013)
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Journal Article
The Genetic Basis of Host Preference and Resting Behavior in the Major African Malaria Vector, Anopheles arabiensis
Main, Bradley J, Lee, Yoosook, Ferguson, Heather M, Kreppel, Katharina S, Kihonda, Anicet, Govella, Nicodem J, Collier, Travis C, Cornel, Anthony J, Eskin, Eleazar, Kang, Eun Yong, Nieman, Catelyn C, Weakley, Allison M, Lanzaro, Gregory C
Published in PLoS genetics (15.09.2016)
Published in PLoS genetics (15.09.2016)
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Journal Article
Vector competence of Aedes aegypti, Culex tarsalis, and Culex quinquefasciatus from California for Zika virus
Main, Bradley J, Nicholson, Jay, Winokur, Olivia C, Steiner, Cody, Riemersma, Kasen K, Stuart, Jackson, Takeshita, Ryan, Krasnec, Michelle, Barker, Christopher M, Coffey, Lark L
Published in PLoS neglected tropical diseases (01.06.2018)
Published in PLoS neglected tropical diseases (01.06.2018)
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Journal Article
Salinity Adaptation and the Contribution of Parental Environmental Effects in Medicago truncatula
Moriuchi, Ken S, Friesen, Maren L, Cordeiro, Matilde A, Badri, Mounawer, Vu, Wendy T, Main, Bradley J, Aouani, Mohamed Elarbi, Nuzhdin, Sergey V, Strauss, Sharon Y, von Wettberg, Eric J B
Published in PloS one (04.03.2016)
Published in PloS one (04.03.2016)
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Journal Article
Evidence for Divergent Selection on Immune Genes between the African Malaria Vectors, Anopheles coluzzii and A. gambiae
Lee, Yoosook, Souvannaseng, Lattha, Collier, Travis C, Main, Bradley J, Norris, Laura C, Fofana, Abdarahamane, Traoré, Sekou F, Cornel, Anthony J, Luckhart, Shirley, Lanzaro, Gregory C
Published in Insects (Basel, Switzerland) (18.12.2020)
Published in Insects (Basel, Switzerland) (18.12.2020)
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Journal Article
Allele-specific expression assays using Solexa
Main, Bradley J, Bickel, Ryan D, McIntyre, Lauren M, Graze, Rita M, Calabrese, Peter P, Nuzhdin, Sergey V
Published in BMC genomics (09.09.2009)
Published in BMC genomics (09.09.2009)
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Journal Article
Complex genome evolution in Anopheles coluzzii associated with increased insecticide usage in Mali
Main, Bradley J, Lee, Yoosook, Collier, Travis C, Norris, Laura C, Brisco, Katherine, Fofana, Abdrahamane, Cornel, Anthony J, Lanzaro, Gregory C
Published in Molecular ecology (01.10.2015)
Published in Molecular ecology (01.10.2015)
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Journal Article
GBshape: a genome browser database for DNA shape annotations
Chiu, Tsu-Pei, Yang, Lin, Zhou, Tianyin, Main, Bradley J, Parker, Stephen C J, Nuzhdin, Sergey V, Tullius, Thomas D, Rohs, Remo
Published in Nucleic acids research (28.01.2015)
Published in Nucleic acids research (28.01.2015)
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Journal Article
GBshape: a genome browser database for DNA shape annotations
Chiu, Tsu-Pei, Yang, Lin, Zhou, Tianyin, Main, Bradley J., Parker, Stephen C.J., Nuzhdin, Sergey V., Tullius, Thomas D., Rohs, Remo
Published in Nucleic acids research (28.01.2015)
Published in Nucleic acids research (28.01.2015)
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Journal Article
The fate of genes that cross species boundaries after a major hybridization event in a natural mosquito population
Hanemaaijer, Mark J., Collier, Travis C., Chang, Allison, Shott, Chloe C., Houston, Parker D., Schmidt, Hanno, Main, Bradley J., Cornel, Anthony J., Lee, Yoosook, Lanzaro, Gregory C.
Published in Molecular ecology (01.12.2018)
Published in Molecular ecology (01.12.2018)
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Journal Article
Whole-genome assembly of Culex tarsalis
Main, Bradley J, Marcantonio, Matteo, Johnston, J Spencer, Rasgon, Jason L, Brown, C Titus, Barker, Christopher M
Published in G3 : genes - genomes - genetics (09.02.2021)
Published in G3 : genes - genomes - genetics (09.02.2021)
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Journal Article
Transcription start site evolution in Drosophila
Main, Bradley J, Smith, Andrew D, Jang, Hyosik, Nuzhdin, Sergey V
Published in Molecular biology and evolution (01.08.2013)
Published in Molecular biology and evolution (01.08.2013)
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Journal Article
Characterization of the complete mitogenome of Anopheles aquasalis, and phylogenetic divergences among Anopheles from diverse geographic zones
Martinez-Villegas, Luis, Assis-Geraldo, Juliana, Koerich, Leonardo B, Collier, Travis C, Lee, Yoosook, Main, Bradley J, Rodrigues, Nilton B, Orfano, Alessandra S, Pires, Ana C A M, Campolina, Thais B, Nacif-Pimenta, Rafael, Baia-da-Silva, Djane C, Duarte, Ana P M, Bahia, Ana C, Rios-Velásquez, Claudia M, Lacerda, Marcus V G, Monteiro, Wuelton M, Lanzaro, Gregory C, Secundino, Nagila F C, Pimenta, Paulo F P
Published in PloS one (03.09.2019)
Published in PloS one (03.09.2019)
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Journal Article
Salinity Adaptation and the Contribution of Parental Environmental Effects in Medicago truncatula: e0150350
Moriuchi, Ken S, Friesen, Maren L, Cordeiro, Matilde A, Badri, Mounawer, Vu, Wendy T, Main, Bradley J, Aouani, Mohamed Elarbi, Nuzhdin, Sergey V, Strauss, Sharon Y, Wettberg, J Bvon
Published in PloS one (01.03.2016)
Published in PloS one (01.03.2016)
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Journal Article