An objective comparison of cell-tracking algorithms
Ulman, Vladimír, Maška, Martin, Magnusson, Klas E G, Ronneberger, Olaf, Haubold, Carsten, Harder, Nathalie, Matula, Pavel, Matula, Petr, Svoboda, David, Radojevic, Miroslav, Smal, Ihor, Rohr, Karl, Jaldén, Joakim, Blau, Helen M, Dzyubachyk, Oleh, Lelieveldt, Boudewijn, Xiao, Pengdong, Li, Yuexiang, Cho, Siu-Yeung, Dufour, Alexandre C, Olivo-Marin, Jean-Christophe, Reyes-Aldasoro, Constantino C, Solis-Lemus, Jose A, Bensch, Robert, Brox, Thomas, Stegmaier, Johannes, Mikut, Ralf, Wolf, Steffen, Hamprecht, Fred A, Esteves, Tiago, Quelhas, Pedro, Demirel, Ömer, Malmström, Lars, Jug, Florian, Tomancak, Pavel, Meijering, Erik, Muñoz-Barrutia, Arrate, Kozubek, Michal, Ortiz-de-Solorzano, Carlos
Published in Nature methods (01.12.2017)
Published in Nature methods (01.12.2017)
Get full text
Journal Article
Global Linking of Cell Tracks Using the Viterbi Algorithm
Magnusson, Klas E. G., Jalden, Joakim, Gilbert, Penney M., Blau, Helen M.
Published in IEEE transactions on medical imaging (01.04.2015)
Published in IEEE transactions on medical imaging (01.04.2015)
Get full text
Journal Article
Segmentation and Track-Analysis in Time-Lapse Imaging of Bacteria
Sadanandan, Sajith Kecheril, Baltekin, Ozden, Magnusson, Klas E. G., Boucharin, Alexis, Ranefall, Petter, Jalden, Joakim, Elf, Johan, Wahlby, Carolina
Published in IEEE journal of selected topics in signal processing (01.02.2016)
Published in IEEE journal of selected topics in signal processing (01.02.2016)
Get full text
Journal Article
The Cell Tracking Challenge: 10 years of objective benchmarking
Maška, Martin, Ulman, Vladimír, Delgado-Rodriguez, Pablo, Gómez-de-Mariscal, Estibaliz, Nečasová, Tereza, Guerrero Peña, Fidel A., Ren, Tsang Ing, Meyerowitz, Elliot M., Scherr, Tim, Löffler, Katharina, Mikut, Ralf, Guo, Tianqi, Wang, Yin, Allebach, Jan P., Bao, Rina, Al-Shakarji, Noor M., Rahmon, Gani, Toubal, Imad Eddine, Palaniappan, Kannappan, Lux, Filip, Matula, Petr, Sugawara, Ko, Magnusson, Klas E. G., Aho, Layton, Cohen, Andrew R., Arbelle, Assaf, Ben-Haim, Tal, Raviv, Tammy Riklin, Isensee, Fabian, Jäger, Paul F., Maier-Hein, Klaus H., Zhu, Yanming, Ederra, Cristina, Urbiola, Ainhoa, Meijering, Erik, Cunha, Alexandre, Muñoz-Barrutia, Arrate, Kozubek, Michal, Ortiz-de-Solórzano, Carlos
Published in Nature methods (01.07.2023)
Published in Nature methods (01.07.2023)
Get full text
Journal Article
Prostaglandin E2 is essential for efficacious skeletal muscle stem-cell function, augmenting regeneration and strength
Ho, Andrew T. V., Palla, Adelaida R., Blake, Matthew R., Yucel, Nora D., Wang, Yu Xin, Magnusson, Klas E. G., Holbrook, Colin A., Kraft, Peggy E., Delp, Scott L., Blau, Helen M.
Published in Proceedings of the National Academy of Sciences - PNAS (27.06.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (27.06.2017)
Get full text
Journal Article
Machine learning-based classification of dual fluorescence signals reveals muscle stem cell fate transitions in response to regenerative niche factors
Togninalli, Matteo, Ho, Andrew T. V., Madl, Christopher M., Holbrook, Colin A., Wang, Yu Xin, Magnusson, Klas E. G., Kirillova, Anna, Chang, Andrew, Blau, Helen M.
Published in npj Regenerative medicine (14.01.2023)
Published in npj Regenerative medicine (14.01.2023)
Get full text
Journal Article
A benchmark for comparison of cell tracking algorithms
Maška, Martin, Ulman, Vladimír, Svoboda, David, Matula, Pavel, Matula, Petr, Ederra, Cristina, Urbiola, Ainhoa, España, Tomás, Venkatesan, Subramanian, Balak, Deepak M W, Karas, Pavel, Bolcková, Tereza, Streitová, Markéta, Carthel, Craig, Coraluppi, Stefano, Harder, Nathalie, Rohr, Karl, Magnusson, Klas E G, Jaldén, Joakim, Blau, Helen M, Dzyubachyk, Oleh, Křížek, Pavel, Hagen, Guy M, Pastor-Escuredo, David, Jimenez-Carretero, Daniel, Ledesma-Carbayo, Maria J, Muñoz-Barrutia, Arrate, Meijering, Erik, Kozubek, Michal, Ortiz-de-Solorzano, Carlos
Published in Bioinformatics (01.06.2014)
Published in Bioinformatics (01.06.2014)
Get full text
Journal Article
Engineered DNA plasmid reduces immunity to dystrophin while improving muscle force in a model of gene therapy of Duchenne dystrophy
Ho, Peggy P., Lahey, Lauren J., Mourkioti, Foteini, Kraft, Peggy E., Filareto, Antonio, Brandt, Moritz, Magnusson, Klas E. G., Finn, Eric E., Chamberlain, Jeffrey S., Robinson, William H., Blau, Helen M., Steinman, Lawrence
Published in Proceedings of the National Academy of Sciences - PNAS (25.09.2018)
Published in Proceedings of the National Academy of Sciences - PNAS (25.09.2018)
Get full text
Journal Article
A collagen-based microwell migration assay to study NK-target cell interactions
Olofsson, Per E., Brandt, Ludwig, Magnusson, Klas E. G., Frisk, Thomas, Jaldén, Joakim, Önfelt, Björn
Published in Scientific reports (23.07.2019)
Published in Scientific reports (23.07.2019)
Get full text
Journal Article
Tracking of non-brownian particles using the Viterbi algorithm
Magnusson, Klas E. G., Jalden, Joakim
Published in 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI) (01.04.2015)
Published in 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI) (01.04.2015)
Get full text
Conference Proceeding
Objective comparison of particle tracking methods
Chenouard, Nicolas, Smal, Ihor, de Chaumont, Fabrice, Maška, Martin, Sbalzarini, Ivo F, Gong, Yuanhao, Cardinale, Janick, Carthel, Craig, Coraluppi, Stefano, Winter, Mark, Cohen, Andrew R, Godinez, William J, Rohr, Karl, Kalaidzidis, Yannis, Liang, Liang, Duncan, James, Shen, Hongying, Xu, Yingke, Magnusson, Klas E G, Jaldén, Joakim, Blau, Helen M, Paul-Gilloteaux, Perrine, Roudot, Philippe, Kervrann, Charles, Waharte, François, Tinevez, Jean-Yves, Shorte, Spencer L, Willemse, Joost, Celler, Katherine, van Wezel, Gilles P, Dan, Han-Wei, Tsai, Yuh-Show, de Solórzano, Carlos Ortiz, Olivo-Marin, Jean-Christophe, Meijering, Erik
Published in Nature methods (01.03.2014)
Published in Nature methods (01.03.2014)
Get full text
Journal Article
Substrate Elasticity Regulates Skeletal Muscle Stem Cell Self-Renewal in Culture
Gilbert, P.M, Havenstrite, K.L, Magnusson, K.E.G, Sacco, A, Leonardi, N.A, Kraft, P, Nguyen, N.K, Thrun, S, Lutolf, M.P, Blau, H.M
Published in Science (American Association for the Advancement of Science) (27.08.2010)
Published in Science (American Association for the Advancement of Science) (27.08.2010)
Get full text
Journal Article
Optimal Scheduling for Interference Mitigation by Range Information
Yajnanarayana, Vijaya, Magnusson, Klas E. G., Brandt, Rasmus, Dwivedi, Satyam, Handel, Peter
Published in IEEE transactions on mobile computing (01.11.2017)
Published in IEEE transactions on mobile computing (01.11.2017)
Get full text
Magazine Article
Optimal Scheduling for Interference Mitigation by Range Information
Yajnanarayana, Vijaya, Magnusson, Klas E. G, Brandt, Rasmus, Dwivedi, Satyam, Händel, Peter
Year of Publication 30.06.2014
Year of Publication 30.06.2014
Get full text
Journal Article