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Muconic acid production from glucose and xylose in Pseudomonas putida via evolution and metabolic engineering
Ling, Chen, Peabody, George L., Salvachúa, Davinia, Kim, Young-Mo, Kneucker, Colin M., Calvey, Christopher H., Monninger, Michela A., Munoz, Nathalie Munoz, Poirier, Brenton C., Ramirez, Kelsey J., St. John, Peter C., Woodworth, Sean P., Magnuson, Jon K., Burnum-Johnson, Kristin E., Guss, Adam M., Johnson, Christopher W., Beckham, Gregg T.
Published in Nature communications (22.08.2022)
Published in Nature communications (22.08.2022)
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Rhodosporidium toruloides: a new platform organism for conversion of lignocellulose into terpene biofuels and bioproducts
Yaegashi, Junko, Kirby, James, Ito, Masakazu, Sun, Jian, Dutta, Tanmoy, Mirsiaghi, Mona, Sundstrom, Eric R., Rodriguez, Alberto, Baidoo, Edward, Tanjore, Deepti, Pray, Todd, Sale, Kenneth, Singh, Seema, Keasling, Jay D., Simmons, Blake A., Singer, Steven W., Magnuson, Jon K., Arkin, Adam P., Skerker, Jeffrey M., Gladden, John M.
Published in Biotechnology for biofuels (23.10.2017)
Published in Biotechnology for biofuels (23.10.2017)
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Mixed and membrane-separated culturing of synthetic cyanobacteria-yeast consortia reveals metabolic cross-talk mimicking natural cyanolichens
Bohutskyi, Pavlo, Pomraning, Kyle R., Jenkins, Jackson P, Kim, Young-Mo, Poirier, Brenton C, Betenbaugh, Michael J, Magnuson, Jon K
Published in Scientific reports (25.10.2024)
Published in Scientific reports (25.10.2024)
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PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements
Bilbao, Aivett, Munoz, Nathalie, Kim, Joonhoon, Orton, Daniel J., Gao, Yuqian, Poorey, Kunal, Pomraning, Kyle R., Weitz, Karl, Burnet, Meagan, Nicora, Carrie D., Wilton, Rosemarie, Deng, Shuang, Dai, Ziyu, Oksen, Ethan, Gee, Aaron, Fasani, Rick A., Tsalenko, Anya, Tanjore, Deepti, Gardner, James, Smith, Richard D., Michener, Joshua K., Gladden, John M., Baker, Erin S., Petzold, Christopher J., Kim, Young-Mo, Apffel, Alex, Magnuson, Jon K., Burnum-Johnson, Kristin E.
Published in Nature communications (28.04.2023)
Published in Nature communications (28.04.2023)
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A new approach to Cas9-based genome editing in Aspergillus niger that is precise, efficient and selectable
Leynaud-Kieffer, Laure M. C., Curran, Samuel C., Kim, Irene, Magnuson, Jon K., Gladden, John M., Baker, Scott E., Simmons, Blake A.
Published in PloS one (17.01.2019)
Published in PloS one (17.01.2019)
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Agrobacterium tumefaciens-mediated transformation of oleaginous yeast Lipomyces species
Dai, Ziyu, Deng, Shuang, Culley, David E., Bruno, Kenneth S., Magnuson, Jon K.
Published in Applied microbiology and biotechnology (01.08.2017)
Published in Applied microbiology and biotechnology (01.08.2017)
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Renewable diesel via hydrothermal liquefaction of oleaginous yeast and residual lignin from bioconversion of corn stover
Collett, James R., Billing, Justin M., Meyer, Pimphan A., Schmidt, Andrew J., Remington, A. Brook, Hawley, Erik R., Hofstad, Beth A., Panisko, Ellen A., Dai, Ziyu, Hart, Todd R., Santosa, Daniel M., Magnuson, Jon K., Hallen, Richard T., Jones, Susanne B.
Published in Applied energy (01.01.2019)
Published in Applied energy (01.01.2019)
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Further engineering of R. toruloides for the production of terpenes from lignocellulosic biomass
Kirby, James, Geiselman, Gina M., Yaegashi, Junko, Kim, Joonhoon, Zhuang, Xun, Tran-Gyamfi, Mary Bao, Prahl, Jan-Philip, Sundstrom, Eric R., Gao, Yuqian, Munoz, Nathalie, Burnum-Johnson, Kristin E., Benites, Veronica T., Baidoo, Edward E. K., Fuhrmann, Anna, Seibel, Katharina, Webb-Robertson, Bobbie-Jo M., Zucker, Jeremy, Nicora, Carrie D., Tanjore, Deepti, Magnuson, Jon K., Skerker, Jeffrey M., Gladden, John M.
Published in Biotechnology for biofuels (21.04.2021)
Published in Biotechnology for biofuels (21.04.2021)
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Enabling malic acid production from corn-stover hydrolysate in Lipomyces starkeyi via metabolic engineering and bioprocess optimization
Czajka, Jeffrey J., Dai, Ziyu, Radivojević, Tijana, Kim, Joonhoon, Deng, Shuang, Lemmon, Teresa, Swita, Marie, Burnet, Meagan C, Munoz, Nathalie, Gao, Yuqian, Kim, Young-Mo, Hofstad, Beth, Magnuson, Jon K., Garcia Martin, Hector, Burnum-Johnson, Kristin E., Pomraning, Kyle R.
Published in Microbial cell factories (21.05.2025)
Published in Microbial cell factories (21.05.2025)
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Production of ent-kaurene from lignocellulosic hydrolysate in Rhodosporidium toruloides
Geiselman, Gina M., Zhuang, Xun, Kirby, James, Tran-Gyamfi, Mary B., Prahl, Jan-Philip, Sundstrom, Eric R., Gao, Yuqian, Munoz Munoz, Nathalie, Nicora, Carrie D., Clay, Derek M., Papa, Gabriella, Burnum-Johnson, Kristin E., Magnuson, Jon K., Tanjore, Deepti, Skerker, Jeffrey M., Gladden, John M.
Published in Microbial cell factories (05.02.2020)
Published in Microbial cell factories (05.02.2020)
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Conversion of poplar biomass into high-energy density tricyclic sesquiterpene jet fuel blendstocks
Geiselman, Gina M., Kirby, James, Landera, Alexander, Otoupal, Peter, Papa, Gabriella, Barcelos, Carolina, Sundstrom, Eric R., Das, Lalitendu, Magurudeniya, Harsha D., Wehrs, Maren, Rodriguez, Alberto, Simmons, Blake A., Magnuson, Jon K., Mukhopadhyay, Aindrila, Lee, Taek Soon, George, Anthe, Gladden, John M.
Published in Microbial cell factories (12.11.2020)
Published in Microbial cell factories (12.11.2020)
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Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing
Le Crom, Stéphane, Schackwitz, Wendy, Pennacchio, Len, Magnuson, Jon K, Culley, David E, Collett, James R, Martin, Joel, Druzhinina, Irina S, Mathis, Hugues, Monot, Frédéric, Seiboth, Bernhard, Cherry, Barbara, Rey, Michael, Berka, Randy, Kubicek, Christian P, Baker, Scott E, Margeot, Antoine
Published in Proceedings of the National Academy of Sciences - PNAS (22.09.2009)
Published in Proceedings of the National Academy of Sciences - PNAS (22.09.2009)
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Multi-Omics Driven Metabolic Network Reconstruction and Analysis of Lignocellulosic Carbon Utilization in Rhodosporidium toruloides
Kim, Joonhoon, Coradetti, Samuel T., Kim, Young-Mo, Gao, Yuqian, Yaegashi, Junko, Zucker, Jeremy D., Munoz, Nathalie, Zink, Erika M., Burnum-Johnson, Kristin E., Baker, Scott E., Simmons, Blake A., Skerker, Jeffrey M., Gladden, John M., Magnuson, Jon K.
Published in Frontiers in bioengineering and biotechnology (08.01.2021)
Published in Frontiers in bioengineering and biotechnology (08.01.2021)
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Deletion of the KU70 homologue facilitates gene targeting in Lipomyces starkeyi strain NRRL Y-11558
Dai, Ziyu, Pomraning, Kyle R., Deng, Shuang, Hofstad, Beth A., Panisko, Ellen A., Rodriguez, Diana, Butcher, Mark G., Culley, David E., Magnuson, Jon K.
Published in Current genetics (01.02.2019)
Published in Current genetics (01.02.2019)
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Metabolic engineering to improve production of 3-hydroxypropionic acid from corn-stover hydrolysate in Aspergillus species
Dai, Ziyu, Pomraning, Kyle R., Deng, Shuang, Kim, Joonhoon, Campbell, Kristen B., Robles, Ana L., Hofstad, Beth A., Munoz, Nathalie, Gao, Yuqian, Lemmon, Teresa, Swita, Marie S., Zucker, Jeremy D., Kim, Young-Mo, Burnum-Johnson, Kristin E., Magnuson, Jon K.
Published in Biotechnology for biofuels and bioproducts (29.03.2023)
Published in Biotechnology for biofuels and bioproducts (29.03.2023)
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Expression of naturally ionic liquid-tolerant thermophilic cellulases in Aspergillus niger
Amaike Campen, Saori, Lynn, Jed, Sibert, Stephanie J., Srikrishnan, Sneha, Phatale, Pallavi, Feldman, Taya, Guenther, Joel M., Hiras, Jennifer, Tran, Yvette Thuy An, Singer, Steven W., Adams, Paul D., Sale, Kenneth L., Simmons, Blake A., Baker, Scott E., Magnuson, Jon K., Gladden, John M.
Published in PloS one (27.12.2017)
Published in PloS one (27.12.2017)
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The Dunaliella salina organelle genomes: large sequences, inflated with intronic and intergenic DNA
Smith, David, Lee, Robert W, Cushman, John C, Magnuson, Jon K, Tran, Duc, Polle, Jürgen EW
Published in BMC plant biology (07.05.2010)
Published in BMC plant biology (07.05.2010)
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Itaconic acid production is regulated by LaeA in Aspergillus pseudoterreus
Pomraning, Kyle R., Dai, Ziyu, Munoz, Nathalie, Kim, Young-Mo, Gao, Yuqian, Deng, Shuang, Lemmon, Teresa, Swita, Marie S., Zucker, Jeremy D., Kim, Joonhoon, Mondo, Stephen J., Panisko, Ellen, Burnet, Meagan C., Webb-Robertson, Bobbie-Jo M., Hofstad, Beth, Baker, Scott E., Burnum-Johnson, Kristin E., Magnuson, Jon K.
Published in Metabolic engineering communications (01.12.2022)
Published in Metabolic engineering communications (01.12.2022)
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Rapid and robust squashed spore/colony PCR of industrially important fungi
Yuan, Guoliang, Czajka, Jeffrey J., Dai, Ziyu, Hu, Dehong, Pomraning, Kyle R., Hofstad, Beth A., Kim, Joonhoon, Robles, Ana L., Deng, Shuang, Magnuson, Jon K.
Published in Fungal biology and biotechnology (08.07.2023)
Published in Fungal biology and biotechnology (08.07.2023)
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Evaluation of chromosomal insertion loci in the Pseudomonas putida KT2440 genome for predictable biosystems design
Chaves, Julie E., Wilton, Rosemarie, Gao, Yuqian, Munoz, Nathalie Munoz, Burnet, Meagan C., Schmitz, Zachary, Rowan, John, Burdick, Leah H., Elmore, Joshua, Guss, Adam, Close, Dan, Magnuson, Jon K., Burnum-Johnson, Kristin E., Michener, Joshua K.
Published in Metabolic engineering communications (01.12.2020)
Published in Metabolic engineering communications (01.12.2020)
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