Muconic acid production from glucose and xylose in Pseudomonas putida via evolution and metabolic engineering
Ling, Chen, Peabody, George L., Salvachúa, Davinia, Kim, Young-Mo, Kneucker, Colin M., Calvey, Christopher H., Monninger, Michela A., Munoz, Nathalie Munoz, Poirier, Brenton C., Ramirez, Kelsey J., St. John, Peter C., Woodworth, Sean P., Magnuson, Jon K., Burnum-Johnson, Kristin E., Guss, Adam M., Johnson, Christopher W., Beckham, Gregg T.
Published in Nature communications (22.08.2022)
Published in Nature communications (22.08.2022)
Get full text
Journal Article
Renewable diesel via hydrothermal liquefaction of oleaginous yeast and residual lignin from bioconversion of corn stover
Collett, James R., Billing, Justin M., Meyer, Pimphan A., Schmidt, Andrew J., Remington, A. Brook, Hawley, Erik R., Hofstad, Beth A., Panisko, Ellen A., Dai, Ziyu, Hart, Todd R., Santosa, Daniel M., Magnuson, Jon K., Hallen, Richard T., Jones, Susanne B.
Published in Applied energy (01.01.2019)
Published in Applied energy (01.01.2019)
Get full text
Journal Article
Agrobacterium tumefaciens-mediated transformation of oleaginous yeast Lipomyces species
Dai, Ziyu, Deng, Shuang, Culley, David E., Bruno, Kenneth S., Magnuson, Jon K.
Published in Applied microbiology and biotechnology (01.08.2017)
Published in Applied microbiology and biotechnology (01.08.2017)
Get full text
Journal Article
PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements
Bilbao, Aivett, Munoz, Nathalie, Kim, Joonhoon, Orton, Daniel J., Gao, Yuqian, Poorey, Kunal, Pomraning, Kyle R., Weitz, Karl, Burnet, Meagan, Nicora, Carrie D., Wilton, Rosemarie, Deng, Shuang, Dai, Ziyu, Oksen, Ethan, Gee, Aaron, Fasani, Rick A., Tsalenko, Anya, Tanjore, Deepti, Gardner, James, Smith, Richard D., Michener, Joshua K., Gladden, John M., Baker, Erin S., Petzold, Christopher J., Kim, Young-Mo, Apffel, Alex, Magnuson, Jon K., Burnum-Johnson, Kristin E.
Published in Nature communications (28.04.2023)
Published in Nature communications (28.04.2023)
Get full text
Journal Article
Production of ent-kaurene from lignocellulosic hydrolysate in Rhodosporidium toruloides
Geiselman, Gina M, Zhuang, Xun, Kirby, James, Tran-Gyamfi, Mary B, Prahl, Jan-Philip, Sundstrom, Eric R, Gao, Yuqian, Munoz Munoz, Nathalie, Nicora, Carrie D, Clay, Derek M, Papa, Gabriella, Burnum-Johnson, Kristin E, Magnuson, Jon K, Tanjore, Deepti, Skerker, Jeffrey M, Gladden, John M
Published in Microbial cell factories (05.02.2020)
Published in Microbial cell factories (05.02.2020)
Get full text
Journal Article
Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing
Le Crom, Stéphane, Schackwitz, Wendy, Pennacchio, Len, Magnuson, Jon K, Culley, David E, Collett, James R, Martin, Joel, Druzhinina, Irina S, Mathis, Hugues, Monot, Frédéric, Seiboth, Bernhard, Cherry, Barbara, Rey, Michael, Berka, Randy, Kubicek, Christian P, Baker, Scott E, Margeot, Antoine
Published in Proceedings of the National Academy of Sciences - PNAS (22.09.2009)
Published in Proceedings of the National Academy of Sciences - PNAS (22.09.2009)
Get full text
Journal Article
Conversion of poplar biomass into high-energy density tricyclic sesquiterpene jet fuel blendstocks
Geiselman, Gina M, Kirby, James, Landera, Alexander, Otoupal, Peter, Papa, Gabriella, Barcelos, Carolina, Sundstrom, Eric R, Das, Lalitendu, Magurudeniya, Harsha D, Wehrs, Maren, Rodriguez, Alberto, Simmons, Blake A, Magnuson, Jon K, Mukhopadhyay, Aindrila, Lee, Taek Soon, George, Anthe, Gladden, John M
Published in Microbial cell factories (12.11.2020)
Published in Microbial cell factories (12.11.2020)
Get full text
Journal Article
Deletion of the KU70 homologue facilitates gene targeting in Lipomyces starkeyi strain NRRL Y-11558
Dai, Ziyu, Pomraning, Kyle R., Deng, Shuang, Hofstad, Beth A., Panisko, Ellen A., Rodriguez, Diana, Butcher, Mark G., Culley, David E., Magnuson, Jon K.
Published in Current genetics (01.02.2019)
Published in Current genetics (01.02.2019)
Get full text
Journal Article
Metabolic engineering to improve production of 3-hydroxypropionic acid from corn-stover hydrolysate in Aspergillus species
Dai, Ziyu, Pomraning, Kyle R, Deng, Shuang, Kim, Joonhoon, Campbell, Kristen B, Robles, Ana L, Hofstad, Beth A, Munoz, Nathalie, Gao, Yuqian, Lemmon, Teresa, Swita, Marie S, Zucker, Jeremy D, Kim, Young-Mo, Burnum-Johnson, Kristin E, Magnuson, Jon K
Published in Biotechnology for biofuels (29.03.2023)
Published in Biotechnology for biofuels (29.03.2023)
Get full text
Journal Article
Expression of naturally ionic liquid-tolerant thermophilic cellulases in Aspergillus niger
Amaike Campen, Saori, Lynn, Jed, Sibert, Stephanie J, Srikrishnan, Sneha, Phatale, Pallavi, Feldman, Taya, Guenther, Joel M, Hiras, Jennifer, Tran, Yvette Thuy An, Singer, Steven W, Adams, Paul D, Sale, Kenneth L, Simmons, Blake A, Baker, Scott E, Magnuson, Jon K, Gladden, John M
Published in PloS one (27.12.2017)
Published in PloS one (27.12.2017)
Get full text
Journal Article
Multi-Omics Driven Metabolic Network Reconstruction and Analysis of Lignocellulosic Carbon Utilization in Rhodosporidium toruloides
Kim, Joonhoon, Coradetti, Samuel T, Kim, Young-Mo, Gao, Yuqian, Yaegashi, Junko, Zucker, Jeremy D, Munoz, Nathalie, Zink, Erika M, Burnum-Johnson, Kristin E, Baker, Scott E, Simmons, Blake A, Skerker, Jeffrey M, Gladden, John M, Magnuson, Jon K
Published in Frontiers in bioengineering and biotechnology (08.01.2021)
Published in Frontiers in bioengineering and biotechnology (08.01.2021)
Get full text
Journal Article
The Dunaliella salina organelle genomes: large sequences, inflated with intronic and intergenic DNA
Smith, David Roy, Lee, Robert W, Cushman, John C, Magnuson, Jon K, Tran, Duc, Polle, Jürgen E W
Published in BMC plant biology (07.05.2010)
Published in BMC plant biology (07.05.2010)
Get full text
Journal Article
Rapid and robust squashed spore/colony PCR of industrially important fungi
Yuan, Guoliang, Czajka, Jeffrey J, Dai, Ziyu, Hu, Dehong, Pomraning, Kyle R, Hofstad, Beth A, Kim, Joonhoon, Robles, Ana L, Deng, Shuang, Magnuson, Jon K
Published in Fungal biology and biotechnology (08.07.2023)
Published in Fungal biology and biotechnology (08.07.2023)
Get full text
Journal Article
Evaluation of chromosomal insertion loci in the Pseudomonas putida KT2440 genome for predictable biosystems design
Chaves, Julie E., Wilton, Rosemarie, Gao, Yuqian, Munoz, Nathalie Munoz, Burnet, Meagan C., Schmitz, Zachary, Rowan, John, Burdick, Leah H., Elmore, Joshua, Guss, Adam, Close, Dan, Magnuson, Jon K., Burnum-Johnson, Kristin E., Michener, Joshua K.
Published in Metabolic engineering communications (01.12.2020)
Published in Metabolic engineering communications (01.12.2020)
Get full text
Journal Article
Itaconic acid production is regulated by LaeA in Aspergillus pseudoterreus
Pomraning, Kyle R., Dai, Ziyu, Munoz, Nathalie, Kim, Young-Mo, Gao, Yuqian, Deng, Shuang, Lemmon, Teresa, Swita, Marie S., Zucker, Jeremy D., Kim, Joonhoon, Mondo, Stephen J., Panisko, Ellen, Burnet, Meagan C., Webb-Robertson, Bobbie-Jo M., Hofstad, Beth, Baker, Scott E., Burnum-Johnson, Kristin E., Magnuson, Jon K.
Published in Metabolic engineering communications (01.12.2022)
Published in Metabolic engineering communications (01.12.2022)
Get full text
Journal Article
Characterization of functionalized nanoporous supports for protein confinement
Lei, Chenghong, Shin, Yongsoon, Magnuson, Jon K, Fryxell, Glen, Lasure, Linda L, Elliott, Douglas C, Liu, Jun, Ackerman, Eric J
Published in Nanotechnology (28.11.2006)
Published in Nanotechnology (28.11.2006)
Get full text
Journal Article
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces
Czajka, Jeffrey J, Han, Yichao, Kim, Joonhoon, Mondo, Stephen J, Hofstad, Beth A, Robles, AnaLaura, Haridas, Sajeet, Riley, Robert, LaButti, Kurt, Pangilinan, Jasmyn, Andreopoulos, William, Lipzen, Anna, Yan, Juying, Wang, Mei, Ng, Vivian, Grigoriev, Igor V, Spatafora, Joseph W, Magnuson, Jon K, Baker, Scott E, Pomraning, Kyle R
Published in Frontiers in bioengineering and biotechnology (04.04.2024)
Published in Frontiers in bioengineering and biotechnology (04.04.2024)
Get full text
Journal Article
Regulation of Yeast-to-Hyphae Transition in Yarrowia lipolytica
Pomraning, Kyle R, Bredeweg, Erin L, Kerkhoven, Eduard J, Barry, Kerrie, Haridas, Sajeet, Hundley, Hope, LaButti, Kurt, Lipzen, Anna, Yan, Mi, Magnuson, Jon K, Simmons, Blake A, Grigoriev, Igor V, Nielsen, Jens, Baker, Scott E
Published in mSphere (26.12.2018)
Published in mSphere (26.12.2018)
Get full text
Journal Article
Proteomic and Functional Analysis of the Cellulase System Expressed by Postia placenta during Brown Rot of Solid Wood
JAE SAN RYU, SHARY, Semarjit, HOUTMAN, Carl J, PANISKO, Ellen A, KORRIPALLY, Premsagar, JOHN, Franz J. St, CROOKS, Casey, SIIKA-AHO, Matti, MAGNUSON, Jon K, HAMMEL, Kenneth E
Published in Applied and Environmental Microbiology (01.11.2011)
Published in Applied and Environmental Microbiology (01.11.2011)
Get full text
Journal Article