Single-Cell Multi-omic Integration Compares and Contrasts Features of Brain Cell Identity
Welch, Joshua D., Kozareva, Velina, Ferreira, Ashley, Vanderburg, Charles, Martin, Carly, Macosko, Evan Z.
Published in Cell (13.06.2019)
Published in Cell (13.06.2019)
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Robust decomposition of cell type mixtures in spatial transcriptomics
Cable, Dylan M., Murray, Evan, Zou, Luli S., Goeva, Aleksandrina, Macosko, Evan Z., Chen, Fei, Irizarry, Rafael A.
Published in Nature biotechnology (01.04.2022)
Published in Nature biotechnology (01.04.2022)
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Slide-seq: A scalable technology for measuring genome-wide expression at high spatial resolution
Rodriques, Samuel G, Stickels, Robert R, Goeva, Aleksandrina, Martin, Carly A, Murray, Evan, Vanderburg, Charles R, Welch, Joshua, Chen, Linlin M, Chen, Fei, Macosko, Evan Z
Published in Science (American Association for the Advancement of Science) (29.03.2019)
Published in Science (American Association for the Advancement of Science) (29.03.2019)
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Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
Macosko, Evan Z., Basu, Anindita, Satija, Rahul, Nemesh, James, Shekhar, Karthik, Goldman, Melissa, Tirosh, Itay, Bialas, Allison R., Kamitaki, Nolan, Martersteck, Emily M., Trombetta, John J., Weitz, David A., Sanes, Joshua R., Shalek, Alex K., Regev, Aviv, McCarroll, Steven A.
Published in Cell (21.05.2015)
Published in Cell (21.05.2015)
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Serotonin and the Neuropeptide PDF Initiate and Extend Opposing Behavioral States in C. elegans
Flavell, Steven W., Pokala, Navin, Macosko, Evan Z., Albrecht, Dirk R., Larsch, Johannes, Bargmann, Cornelia I.
Published in Cell (29.08.2013)
Published in Cell (29.08.2013)
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Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain
Saunders, Arpiar, Macosko, Evan Z., Wysoker, Alec, Goldman, Melissa, Krienen, Fenna M., de Rivera, Heather, Bien, Elizabeth, Baum, Matthew, Bortolin, Laura, Wang, Shuyu, Goeva, Aleksandrina, Nemesh, James, Kamitaki, Nolan, Brumbaugh, Sara, Kulp, David, McCarroll, Steven A.
Published in Cell (09.08.2018)
Published in Cell (09.08.2018)
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Cell diversity and network dynamics in photosensitive human brain organoids
Quadrato, Giorgia, Nguyen, Tuan, Macosko, Evan Z., Sherwood, John L., Min Yang, Sung, Berger, Daniel R., Maria, Natalie, Scholvin, Jorg, Goldman, Melissa, Kinney, Justin P., Boyden, Edward S., Lichtman, Jeff W., Williams, Ziv M., McCarroll, Steven A., Arlotta, Paola
Published in Nature (London) (04.05.2017)
Published in Nature (London) (04.05.2017)
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Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics
Shekhar, Karthik, Lapan, Sylvain W., Whitney, Irene E., Tran, Nicholas M., Macosko, Evan Z., Kowalczyk, Monika, Adiconis, Xian, Levin, Joshua Z., Nemesh, James, Goldman, Melissa, McCarroll, Steven A., Cepko, Constance L., Regev, Aviv, Sanes, Joshua R.
Published in Cell (25.08.2016)
Published in Cell (25.08.2016)
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Dissection of artifactual and confounding glial signatures by single-cell sequencing of mouse and human brain
Marsh, Samuel E., Walker, Alec J., Kamath, Tushar, Dissing-Olesen, Lasse, Hammond, Timothy R., de Soysa, T. Yvanka, Young, Adam M. H., Murphy, Sarah, Abdulraouf, Abdulraouf, Nadaf, Naeem, Dufort, Connor, Walker, Alicia C., Lucca, Liliana E., Kozareva, Velina, Vanderburg, Charles, Hong, Soyon, Bulstrode, Harry, Hutchinson, Peter J., Gaffney, Daniel J., Hafler, David A., Franklin, Robin J. M., Macosko, Evan Z., Stevens, Beth
Published in Nature neuroscience (01.03.2022)
Published in Nature neuroscience (01.03.2022)
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Journal Article
Genetically Distinct Parallel Pathways in the Entopeduncular Nucleus for Limbic and Sensorimotor Output of the Basal Ganglia
Wallace, Michael L., Saunders, Arpiar, Huang, Kee Wui, Philson, Adrienne C., Goldman, Melissa, Macosko, Evan Z., McCarroll, Steven A., Sabatini, Bernardo L.
Published in Neuron (Cambridge, Mass.) (05.04.2017)
Published in Neuron (Cambridge, Mass.) (05.04.2017)
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Dissecting mammalian spermatogenesis using spatial transcriptomics
Chen, Haiqi, Murray, Evan, Sinha, Anubhav, Laumas, Anisha, Li, Jilong, Lesman, Daniel, Nie, Xichen, Hotaling, Jim, Guo, Jingtao, Cairns, Bradley R., Macosko, Evan Z., Cheng, C. Yan, Chen, Fei
Published in Cell reports (Cambridge) (02.11.2021)
Published in Cell reports (Cambridge) (02.11.2021)
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Journal Article
Oxytocin/Vasopressin-Related Peptides Have an Ancient Role in Reproductive Behavior
Garrison, Jennifer L., Macosko, Evan Z., Bernstein, Samantha, Pokala, Navin, Albrecht, Dirk R., Bargmann, Cornelia I.
Published in Science (American Association for the Advancement of Science) (26.10.2012)
Published in Science (American Association for the Advancement of Science) (26.10.2012)
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Dissecting the immune suppressive human prostate tumor microenvironment via integrated single-cell and spatial transcriptomic analyses
Hirz, Taghreed, Mei, Shenglin, Sarkar, Hirak, Kfoury, Youmna, Wu, Shulin, Verhoeven, Bronte M., Subtelny, Alexander O., Zlatev, Dimitar V., Wszolek, Matthew W., Salari, Keyan, Murray, Evan, Chen, Fei, Macosko, Evan Z., Wu, Chin-Lee, Scadden, David T., Dahl, Douglas M., Baryawno, Ninib, Saylor, Philip J., Kharchenko, Peter V., Sykes, David B.
Published in Nature communications (07.02.2023)
Published in Nature communications (07.02.2023)
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Exposure of iPSC-derived human microglia to brain substrates enables the generation and manipulation of diverse transcriptional states in vitro
Dolan, Michael-John, Therrien, Martine, Jereb, Saša, Kamath, Tushar, Gazestani, Vahid, Atkeson, Trevor, Marsh, Samuel E., Goeva, Aleksandrina, Lojek, Neal M., Murphy, Sarah, White, Cassandra M., Joung, Julia, Liu, Bingxu, Limone, Francesco, Eggan, Kevin, Hacohen, Nir, Bernstein, Bradley E., Glass, Christopher K., Leinonen, Ville, Blurton-Jones, Mathew, Zhang, Feng, Epstein, Charles B., Macosko, Evan Z., Stevens, Beth
Published in Nature immunology (01.08.2023)
Published in Nature immunology (01.08.2023)
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Control of osteocyte dendrite formation by Sp7 and its target gene osteocrin
Wang, Jialiang S., Kamath, Tushar, Mazur, Courtney M., Mirzamohammadi, Fatemeh, Rotter, Daniel, Hojo, Hironori, Castro, Christian D., Tokavanich, Nicha, Patel, Rushi, Govea, Nicolas, Enishi, Tetsuya, Wu, Yunshu, da Silva Martins, Janaina, Bruce, Michael, Brooks, Daniel J., Bouxsein, Mary L., Tokarz, Danielle, Lin, Charles P., Abdul, Abdul, Macosko, Evan Z., Fiscaletti, Melissa, Munns, Craig F., Ryder, Pearl, Kost-Alimova, Maria, Byrne, Patrick, Cimini, Beth, Fujiwara, Makoto, Kronenberg, Henry M., Wein, Marc N.
Published in Nature communications (01.11.2021)
Published in Nature communications (01.11.2021)
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Multimodal single-cell and whole-genome sequencing of small, frozen clinical specimens
Wang, Yiping, Fan, Joy Linyue, Melms, Johannes C., Amin, Amit Dipak, Georgis, Yohanna, Barrera, Irving, Ho, Patricia, Tagore, Somnath, Abril-Rodríguez, Gabriel, He, Siyu, Jin, Yinuo, Biermann, Jana, Hofree, Matan, Caprio, Lindsay, Berhe, Simon, Khan, Shaheer A., Henick, Brian S., Ribas, Antoni, Macosko, Evan Z., Chen, Fei, Taylor, Alison M., Schwartz, Gary K., Carvajal, Richard D., Azizi, Elham, Izar, Benjamin
Published in Nature genetics (01.01.2023)
Published in Nature genetics (01.01.2023)
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Emergence of division of labor in tissues through cell interactions and spatial cues
Adler, Miri, Moriel, Noa, Goeva, Aleksandrina, Avraham-Davidi, Inbal, Mages, Simon, Adams, Taylor S., Kaminski, Naftali, Macosko, Evan Z., Regev, Aviv, Medzhitov, Ruslan, Nitzan, Mor
Published in Cell reports (Cambridge) (30.05.2023)
Published in Cell reports (Cambridge) (30.05.2023)
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Quantitative Mapping of a Digenic Behavioral Trait Implicates Globin Variation in C. elegans Sensory Behaviors
McGrath, Patrick T., Rockman, Matthew V., Zimmer, Manuel, Jang, Heeun, Macosko, Evan Z., Kruglyak, Leonid, Bargmann, Cornelia I.
Published in Neuron (Cambridge, Mass.) (12.03.2009)
Published in Neuron (Cambridge, Mass.) (12.03.2009)
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