Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis
Fernandes, Andrew D, Reid, Jennifer Ns, Macklaim, Jean M, McMurrough, Thomas A, Edgell, David R, Gloor, Gregory B
Published in Microbiome (05.05.2014)
Published in Microbiome (05.05.2014)
Get full text
Journal Article
Microbiome profiling by illumina sequencing of combinatorial sequence-tagged PCR products
Gloor, Gregory B, Hummelen, Ruben, Macklaim, Jean M, Dickson, Russell J, Fernandes, Andrew D, MacPhee, Roderick, Reid, Gregor
Published in PloS one (26.10.2010)
Published in PloS one (26.10.2010)
Get full text
Journal Article
A multi-platform metabolomics approach identifies highly specific biomarkers of bacterial diversity in the vagina of pregnant and non-pregnant women
McMillan, Amy, Rulisa, Stephen, Sumarah, Mark, Macklaim, Jean M., Renaud, Justin, Bisanz, Jordan E., Gloor, Gregory B., Reid, Gregor
Published in Scientific reports (21.09.2015)
Published in Scientific reports (21.09.2015)
Get full text
Journal Article
Deep sequencing of the vaginal microbiota of women with HIV
Hummelen, Ruben, Fernandes, Andrew D, Macklaim, Jean M, Dickson, Russell J, Changalucha, John, Gloor, Gregory B, Reid, Gregor
Published in PloS one (12.08.2010)
Published in PloS one (12.08.2010)
Get full text
Journal Article
Vaginal microbiome and epithelial gene array in post-menopausal women with moderate to severe dryness
Hummelen, Ruben, Macklaim, Jean M, Bisanz, Jordan E, Hammond, Jo-Anne, McMillan, Amy, Vongsa, Rebecca, Koenig, David, Gloor, Gregory B, Reid, Gregor
Published in PloS one (02.11.2011)
Published in PloS one (02.11.2011)
Get full text
Journal Article
Pilot assessment of probiotics for pregnant women in Rwanda
McMillan, Amy, Rulisa, Stephen, Gloor, Gregory B, Macklaim, Jean M, Sumarah, Mark, Reid, Gregor
Published in PloS one (18.06.2018)
Published in PloS one (18.06.2018)
Get full text
Journal Article
Streptococcus salivarius inhibits immune activation by periodontal disease pathogens
MacDonald, Kyle W, Chanyi, Ryan M, Macklaim, Jean M, Cadieux, Peter A, Reid, Gregor, Burton, Jeremy P
Published in BMC oral health (07.05.2021)
Published in BMC oral health (07.05.2021)
Get full text
Journal Article
Rational probe design for efficient rRNA depletion and improved metatranscriptomic analysis of human microbiomes
Tan, Asako, Murugapiran, Senthil, Mikalauskas, Alaya, Koble, Jeff, Kennedy, Drew, Hyde, Fred, Ruotti, Victor, Law, Emily, Jensen, Jordan, Schroth, Gary P, Macklaim, Jean M, Kuersten, Scott, LeFrançois, Brice, Gohl, Daryl M
Published in BMC microbiology (20.10.2023)
Published in BMC microbiology (20.10.2023)
Get full text
Journal Article
Comparative Genomic and Phenotypic Analysis of the Vaginal Probiotic Lactobacillus rhamnosus GR-1
Petrova, Mariya I, Macklaim, Jean M, Wuyts, Sander, Verhoeven, Tine, Vanderleyden, Jos, Gloor, Gregory B, Lebeer, Sarah, Reid, Gregor
Published in Frontiers in microbiology (15.06.2018)
Published in Frontiers in microbiology (15.06.2018)
Get full text
Journal Article
The Skin Microbiome: Current Techniques, Challenges, and Future Directions
Santiago-Rodriguez, Tasha M, Le François, Brice, Macklaim, Jean M, Doukhanine, Evgueni, Hollister, Emily B
Published in Microorganisms (Basel) (06.05.2023)
Published in Microorganisms (Basel) (06.05.2023)
Get full text
Journal Article
omicplotR: visualizing omic datasets as compositions
Giguere, Daniel J, Macklaim, Jean M, Lieng, Brandon Y, Gloor, Gregory B
Published in BMC bioinformatics (15.11.2019)
Published in BMC bioinformatics (15.11.2019)
Get full text
Journal Article
ANOVA-like differential expression (ALDEx) analysis for mixed population RNA-Seq
Fernandes, Andrew D, Macklaim, Jean M, Linn, Thomas G, Reid, Gregor, Gloor, Gregory B
Published in PloS one (02.07.2013)
Published in PloS one (02.07.2013)
Get full text
Journal Article
Persistence of the oral probiotic Streptococcus salivarius M18 is dose dependent and megaplasmid transfer can augment their bacteriocin production and adhesion characteristics
Burton, Jeremy P, Wescombe, Philip A, Macklaim, Jean M, Chai, Melissa H C, Macdonald, Kyle, Hale, John D F, Tagg, John, Reid, Gregor, Gloor, Gregory B, Cadieux, Peter A
Published in PloS one (13.06.2013)
Published in PloS one (13.06.2013)
Get full text
Journal Article
Subinhibitory antibiotic therapy alters recurrent urinary tract infection pathogenesis through modulation of bacterial virulence and host immunity
Goneau, Lee W, Hannan, Thomas J, MacPhee, Roderick A, Schwartz, Drew J, Macklaim, Jean M, Gloor, Gregory B, Razvi, Hassan, Reid, Gregor, Hultgren, Scott J, Burton, Jeremy P
Published in mBio (31.03.2015)
Published in mBio (31.03.2015)
Get full text
Journal Article
Genome sequence of Lactobacillus pentosus KCA1: vaginal isolate from a healthy premenopausal woman
Anukam, Kingsley C, Macklaim, Jean M, Gloor, Gregory B, Reid, Gregor, Boekhorst, Jos, Renckens, Bernadet, van Hijum, Sacha A F T, Siezen, Roland J
Published in PloS one (19.03.2013)
Published in PloS one (19.03.2013)
Get full text
Journal Article
Microbiome Datasets Are Compositional: And This Is Not Optional
Gloor, Gregory B, Macklaim, Jean M, Pawlowsky-Glahn, Vera, Egozcue, Juan J
Published in Frontiers in microbiology (15.11.2017)
Published in Frontiers in microbiology (15.11.2017)
Get full text
Journal Article
Publication
Microbiota of human breast tissue
Urbaniak, Camilla, Cummins, Joanne, Brackstone, Muriel, Macklaim, Jean M, Gloor, Gregory B, Baban, Chwanrow K, Scott, Leslie, O'Hanlon, Deidre M, Burton, Jeremy P, Francis, Kevin P, Tangney, Mark, Reid, Gregor
Published in Applied and Environmental Microbiology (01.05.2014)
Published in Applied and Environmental Microbiology (01.05.2014)
Get full text
Journal Article