Natural selection in the evolution of SARS-CoV-2 in bats created a generalist virus and highly capable human pathogen
MacLean, Oscar A, Lytras, Spyros, Weaver, Steven, Singer, Joshua B, Boni, Maciej F, Lemey, Philippe, Kosakovsky Pond, Sergei L, Robertson, David L
Published in PLoS biology (12.03.2021)
Published in PLoS biology (12.03.2021)
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In vitro selection of Remdesivir resistance suggests evolutionary predictability of SARS-CoV-2
Szemiel, Agnieszka M, Merits, Andres, Orton, Richard J, MacLean, Oscar A, Pinto, Rute Maria, Wickenhagen, Arthur, Lieber, Gauthier, Turnbull, Matthew L, Wang, Sainan, Furnon, Wilhelm, Suarez, Nicolas M, Mair, Daniel, da Silva Filipe, Ana, Willett, Brian J, Wilson, Sam J, Patel, Arvind H, Thomson, Emma C, Palmarini, Massimo, Kohl, Alain, Stewart, Meredith E
Published in PLoS pathogens (17.09.2021)
Published in PLoS pathogens (17.09.2021)
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The emergence and ongoing convergent evolution of the SARS-CoV-2 N501Y lineages
Martin, Darren P., Weaver, Steven, Tegally, Houriiyah, San, James Emmanuel, Shank, Stephen D., Wilkinson, Eduan, Lucaci, Alexander G., Giandhari, Jennifer, Naidoo, Sureshnee, Pillay, Yeshnee, Singh, Lavanya, Lessells, Richard J., Gupta, Ravindra K., Wertheim, Joel O., Nekturenko, Anton, Murrell, Ben, Harkins, Gordon W., Lemey, Philippe, MacLean, Oscar A., Robertson, David L., de Oliveira, Tulio, Kosakovsky Pond, Sergei L.
Published in Cell (30.09.2021)
Published in Cell (30.09.2021)
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No evidence for distinct types in the evolution of SARS-CoV-2
MacLean, Oscar A, Orton, Richard J, Singer, Joshua B, Robertson, David L
Published in Virus Evolution (01.01.2020)
Published in Virus Evolution (01.01.2020)
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Web Resource
Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function
Martin, Darren P., Lytras, Spyros, Lucaci, Alexander G., Maier, Wolfgang, Grüning, Björn, Shank, Stephen D., Weaver, Steven, MacLean, Oscar A., Orton, Richard J., Lemey, Philippe, Boni, Maciej F., Tegally, Houriiyah, Harkins, Gordon W., Scheepers, Cathrine, Bhiman, Jinal N., Everatt, Josie, Amoako, Daniel G., San, James Emmanuel, Giandhari, Jennifer, Sigal, Alex, Williamson, Carolyn, Hsiao, Nei-yuan, von Gottberg, Anne, De Klerk, Arne, Shafer, Robert W., Robertson, David L., Wilkinson, Robert J., Sewell, B. Trevor, Lessells, Richard, Nekrutenko, Anton, Greaney, Allison J., Starr, Tyler N., Bloom, Jesse D., Murrell, Ben, Wilkinson, Eduan, Gupta, Ravindra K., de Oliveira, Tulio, Kosakovsky Pond, Sergei L.
Published in Molecular biology and evolution (2022)
Published in Molecular biology and evolution (2022)
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Evolutionary history of human Plasmodium vivax revealed by genome-wide analyses of related ape parasites
Loy, Dorothy E., Plenderleith, Lindsey J., Sundararaman, Sesh A., Liu, Weimin, Gruszczyk, Jakub, Chen, Yi-Jun, Trimboli, Stephanie, Learn, Gerald H., MacLean, Oscar A., Morgan, Alex L. K., Li, Yingying, Avitto, Alexa N., Giles, Jasmin, Calvignac-Spencer, Sébastien, Sachse, Andreas, Leendertz, Fabian H., Speede, Sheri, Ayouba, Ahidjo, Peeters, Martine, Rayner, Julian C., Tham, Wai-Hong, Sharp, Paul M., Hahn, Beatrice H.
Published in Proceedings of the National Academy of Sciences - PNAS (04.09.2018)
Published in Proceedings of the National Academy of Sciences - PNAS (04.09.2018)
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Correlates of disease severity in bluetongue as a model of acute arbovirus infection
Herder, Vanessa, Caporale, Marco, MacLean, Oscar A, Pintus, Davide, Huang, Xinyi, Nomikou, Kyriaki, Palmalux, Natasha, Nichols, Jenna, Scivoli, Rosario, Boutell, Chris, Taggart, Aislynn, Allan, Jay, Malik, Haris, Ilia, Georgios, Gu, Quan, Ronchi, Gaetano Federico, Furnon, Wilhelm, Zientara, Stephan, Bréard, Emmanuel, Antonucci, Daniela, Capista, Sara, Giansante, Daniele, Cocco, Antonio, Mercante, Maria Teresa, Di Ventura, Mauro, Da Silva Filipe, Ana, Puggioni, Giantonella, Sevilla, Noemi, Stewart, Meredith E, Ligios, Ciriaco, Palmarini, Massimo
Published in PLoS pathogens (16.08.2024)
Published in PLoS pathogens (16.08.2024)
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Conserved recombination patterns across coronavirus subgenera
de Klerk, Arné, Swanepoel, Phillip, Lourens, Rentia, Zondo, Mpumelelo, Abodunran, Isaac, Lytras, Spyros, MacLean, Oscar A, Robertson, David, Kosakovsky Pond, Sergei L, Zehr, Jordan D, Kumar, Venkatesh, Stanhope, Michael J, Harkins, Gordon, Murrell, Ben, Martin, Darren P
Published in Virus evolution (01.12.2022)
Published in Virus evolution (01.12.2022)
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Journal Article
Adaptive Evolution of RH5 in Ape Plasmodium species of the Laverania Subgenus
Plenderleith, Lindsey J, Liu, Weimin, MacLean, Oscar A, Li, Yingying, Loy, Dorothy E, Sundararaman, Sesh A, Bibollet-Ruche, Frederic, Learn, Gerald H, Hahn, Beatrice H, Sharp, Paul M
Published in mBio (23.01.2018)
Published in mBio (23.01.2018)
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Reply to Forni et al., "Multiple Selected Changes May Modulate the Molecular Interaction between Laverania RH5 and Primate Basigin"
Plenderleith, Lindsey J, Liu, Weimin, MacLean, Oscar A, Li, Yingying, Loy, Dorothy E, Sundararaman, Sesh A, Bibollet-Ruche, Frederic, Learn, Gerald H, Hahn, Beatrice H, Sharp, Paul M
Published in mBio (22.05.2018)
Published in mBio (22.05.2018)
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Journal Article
Natural selection in the evolution of SARS-CoV-2 in bats, not humans, created a highly capable human pathogen
MacLean, Oscar A, Lytras, Spyros, Weaver, Steven, Singer, Joshua B, Boni, Maciej F, Lemey, Philippe, Kosakovsky Pond, Sergei L, Robertson, David L
Published in bioRxiv (30.07.2020)
Published in bioRxiv (30.07.2020)
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Reply to Forni et al., “Multiple Selected Changes May Modulate the Molecular Interaction between italic toggle="yes">Laverania /italic> RH5 and Primate Basigin”
Lindsey J. Plenderleith, Weimin Liu, Oscar A. MacLean, Yingying Li, Dorothy E. Loy, Sesh A. Sundararaman, Frederic Bibollet-Ruche, Gerald H. Learn, Beatrice H. Hahn, Paul M. Sharp
Published in mBio (01.07.2018)
Published in mBio (01.07.2018)
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Adaptive Evolution of RH5 in Ape italic toggle="yes">Plasmodium /italic> species of the italic toggle="yes">Laverania /italic> Subgenus
Lindsey J. Plenderleith, Weimin Liu, Oscar A. MacLean, Yingying Li, Dorothy E. Loy, Sesh A. Sundararaman, Frederic Bibollet-Ruche, Gerald H. Learn, Beatrice H. Hahn, Paul M. Sharp
Published in mBio (01.03.2018)
Published in mBio (01.03.2018)
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Journal Article
Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function
Martin, Darren P, Lytras, Spyros, Lucaci, Alexander G, Maier, Wolfgang, Grüning, Björn, Shank, Stephen D, Weaver, Steven, MacLean, Oscar A, Orton, Richard J, Lemey, Philippe, Boni, Maciej F, Tegally, Houriiyah, Harkins, Gordon, Scheepers, Cathrine, Bhiman, Jinal N, Everatt, Josie, Amoako, Daniel G, San, James Emmanuel, Giandhari, Jennifer, Sigal, Alex, Williamson, Carolyn, Hsiao, Nei-Yuan, von Gottberg, Anne, De Klerk, Arne, Shafer, Robert W, Robertson, David L, Wilkinson, Robert J, Sewell, B Trevor, Lessells, Richard, Nekrutenko, Anton, Greaney, Allison J, Starr, Tyler N, Bloom, Jesse D, Murrell, Ben, Wilkinson, Eduan, Gupta, Ravindra K, de Oliveira, Tulio, Kosakovsky Pond, Sergei L
Published in bioRxiv : the preprint server for biology (18.01.2022)
Published in bioRxiv : the preprint server for biology (18.01.2022)
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The emergence and ongoing convergent evolution of the N501Y lineages coincides with a major global shift in the SARS-CoV-2 selective landscape
Martin, Darren P, Weaver, Steven, Tegally, Houryiah, San, Emmanuel James, Shank, Stephen D, Wilkinson, Eduan, Lucaci, Alexander G, Giandhari, Jennifer, Naidoo, Sureshnee, Pillay, Yeshnee, Singh, Lavanya, Lessells, Richard J, Gupta, Ravindra K, Wertheim, Joel O, Nekturenko, Anton, Murrell, Ben, Harkins, Gordon W, Lemey, Philippe, MacLean, Oscar A, Robertson, David L, de Oliveira, Tulio, Kosakovsky Pond, Sergei L
Published in medRxiv : the preprint server for health sciences (25.07.2021)
Published in medRxiv : the preprint server for health sciences (25.07.2021)
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